Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0016489

Physical Location & Seq

Genomic Coordinates Forward (+)

29704497 .. 29705858

Gene Structure 1362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018431

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGTGAAGGCTGGTTTTGCCGGGGATGATGCTCCCAGGGCTGTGTTCCCTAGTATTGTTGGTCGGCCACGACATACTGGTGTCATGGTTGGTATGGGCCAGAAGGATGCCTATGTAGGTGATGAAGCACAGTCTAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGTATAGTAAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACTTTCTACAATGAGCTCCGTGTTGCTCCCGAAGAGCACCCAGTTCTTCTCACTGAGGCTCCTCTTAACCCCAAGGCCAACAGGGAAAAGATGACCCAGATTATGTTTGAGACCTTCAATGTGCCTGCTATGTATGTTGCCATCCAGGCTGTTCTCTCTCTGTATGCTAGTGGTCGTACAACTGGTATTGTGCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTACGAAGGTTATGCCCTCCCCCACGCCATCCTTCGTCTGGACCTTGCTGGACGTGACCTTACAGATGCTTTGATGAAGATTCTCACTGAAAGAGGGTACATGTTCACCACCACTGCTGAACGGGAAATTGTTCGTGACATGAAGGAGAAGCTTGCATATGTTGCCCTTGACTATGAACAAGAACTTGAGACTGCCAAGAGCAGCTCCTCAGTTGAGAAGAACTATGAGCTTCCTGACGGCCAAGTCATCACAATTGGAGCTGAGAGATTCAGGTGCCCAGAAGTCCTCTTCCAACCATCCCTCATCGGAATGGAAGCTGCCGGCATTCATGAGACTACCTATAACTCCATTATGAAGTGTGATGTGGATATCAGAAAAGACTTGTATGGCAACATTGTGCTCAGTGGAGGTTCAACTATGTTCCCTGGTATTGCAGACAGGATGAGCAAGGAAATCACTGCTCTTGCTCCAAGCAGCATGAAGATCAAGGTTGTGGCTCCACCAGAGAGGAAGTACAGTGTCTGGATCGGAGGGTCCATTCTTGCTTCCCTCAGTACCTTCCAACAGATGTGGATTTCTAAGGGAGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006950 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009611 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009845 GO:0009888 GO:0009941 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030312 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051301 GO:0055044 GO:0060560 GO:0070013 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090351 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

361

Amino Acids

39.96

Weight (kDa)

5.67

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	1 - 360	2.5e-141	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09810
fragaria_vesca	FvH4_1g23490
malus_domestica	MD01G1001600.v1.1
prunus_persica	Prupe.6G163400_v2.0.a1 Prupe.6G163400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118891
rosa_laevigata	RLG00000018431
rosa_multiflora	Rmu_sc0001653.1_g000037
rosa_roxburghii	Rroxscaffold_2G00124610
rosa_rugosa	Rorug02G0219400
rosa_samantha	Rh2BG288200 Rh2DG283400 Rh2DG302700
rosa_wichuraiana	Rw2G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	692
AccB1I	GGYRCC	1 cut(s)	723
AclWI	GGATC	1 cut(s)	983
AcoI	YGGCCR	2 cut(s)	65, 688
AdeI	CACNNNGTG	1 cut(s)	442
AfaI	GTAC	4 cut(s)	397, 548, 965, 1006
AfiI	CCNNNNNNNGG	1 cut(s)	487
AflIII	ACRYGT	1 cut(s)	549
AgsI	TTSAA	3 cut(s)	157, 337, 864
AjiI	CACGTC	1 cut(s)	503
AjnI	CCWGG	3 cut(s)	35, 363, 874
AluBI	AGCT	6 cut(s)	235, 601, 654, 679, 710, 767
AluI	AGCT	6 cut(s)	235, 601, 654, 679, 710, 767
Alw21I	GWGCWC	4 cut(s)	237, 258, 414, 852
Alw26I	GTCTC	3 cut(s)	323, 632, 776
AlwI	GGATC	1 cut(s)	983
AlwNI	CAGNNNCTG	1 cut(s)	972
AoxI	GGCC	4 cut(s)	65, 97, 294, 688
ApeKI	GCWGC	3 cut(s)	651, 767, 924
Asp700I	GAANNNNTTC	2 cut(s)	579, 1076
AspS9I	GGNCC	4 cut(s)	97, 490, 984, 1052
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	4 cut(s)	16, 131, 434, 547
AvaII	GGWCC	3 cut(s)	490, 984, 1052
BaeGI	GKGCMC	1 cut(s)	728
BanI	GGYRCC	1 cut(s)	723
BanII	GRGCYC	1 cut(s)	237
Bbv12I	GWGCWC	4 cut(s)	237, 258, 414, 852
BbvI	GCAGC	3 cut(s)	663, 754, 936
BccI	CCATC	5 cut(s)	368, 419, 485, 754, 1063
BceAI	ACGGC	1 cut(s)	703
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BciT130I	CCWGG	3 cut(s)	37, 365, 876
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	3 cut(s)	323, 632, 776
BfaI	CTAG	2 cut(s)	51, 387
BglI	GCCNNNNNGGC	1 cut(s)	365
BglII	AGATCT	1 cut(s)	207
BisI	GCNGC	3 cut(s)	652, 768, 925
BlsI	GCNGC	3 cut(s)	653, 769, 926
Bme1390I	CCNGG	4 cut(s)	22, 37, 365, 876
Bme18I	GGWCC	3 cut(s)	490, 984, 1052
BmgBI	CACGTC	1 cut(s)	503
BmgT120I	GGNCC	4 cut(s)	97, 490, 984, 1052
BmiI	GGNNCC	4 cut(s)	279, 725, 948, 985
BmrFI	CCNGG	4 cut(s)	22, 37, 365, 876
BmrI	ACTGGG	2 cut(s)	199, 254
BmsI	GCATC	4 cut(s)	19, 97, 223, 505
BmuI	ACTGGG	2 cut(s)	199, 254
BpuEI	CTTGAG	1 cut(s)	656
BpuMI	CCSGG	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	323
BsaJI	CCNNGG	5 cut(s)	21, 35, 36, 291, 874
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse118I	RCCGGY	1 cut(s)	770
Bse1I	ACTGG	4 cut(s)	82, 194, 260, 406
BseBI	CCWGG	3 cut(s)	37, 365, 876
BseDI	CCNNGG	5 cut(s)	21, 35, 36, 291, 874
BseGI	GGATG	8 cut(s)	31, 112, 199, 360, 477, 746, 897, 1055
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMII	CTCAG	5 cut(s)	264, 672, 702, 865, 1015
BseNI	ACTGG	4 cut(s)	82, 194, 260, 406
BseRI	GAGGAG	2 cut(s)	270, 646
BseSI	GKGCMC	1 cut(s)	728
BseXI	GCAGC	3 cut(s)	663, 754, 936
BshFI	GGCC	4 cut(s)	67, 99, 296, 690
BshNI	GGYRCC	1 cut(s)	723
BsiHKAI	GWGCWC	4 cut(s)	237, 258, 414, 852
BsiSI	CCGG	2 cut(s)	21, 771
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	3 cut(s)	323, 632, 776
BsmI	GAATGC	1 cut(s)	774
BsnI	GGCC	4 cut(s)	67, 99, 296, 690
Bso31I	GGTCTC	1 cut(s)	323
Bsp1286I	GDGCHC	5 cut(s)	237, 258, 414, 728, 852
Bsp143I	GATC	3 cut(s)	207, 933, 975
BspANI	GGCC	4 cut(s)	67, 99, 296, 690
BspCNI	CTCAG	5 cut(s)	265, 671, 703, 864, 1014
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	4 cut(s)	279, 725, 948, 985
BspPI	GGATC	1 cut(s)	983
BspQI	GCTCTTC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	723
BspTNI	GGTCTC	1 cut(s)	323
BsrFI	RCCGGY	1 cut(s)	770
BsrI	ACTGG	4 cut(s)	82, 194, 260, 406
BssAI	RCCGGY	1 cut(s)	770
BssECI	CCNNGG	5 cut(s)	21, 35, 36, 291, 874
BssMI	GATC	3 cut(s)	207, 933, 975
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	3 cut(s)	37, 365, 876
Bst4CI	ACNGT	3 cut(s)	132, 442, 968
Bst6I	CTCTTC	2 cut(s)	246, 743
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstC8I	GCNNGC	3 cut(s)	345, 603, 772
BstDEI	CTNAG	6 cut(s)	273, 658, 711, 851, 1001, 1029
BstF5I	GGATG	8 cut(s)	31, 112, 199, 360, 477, 746, 897, 1055
BstKTI	GATC	3 cut(s)	210, 936, 978
BstMAI	GTCTC	3 cut(s)	323, 632, 776
BstMBI	GATC	3 cut(s)	207, 933, 975
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 38, 365, 611
BstNI	CCWGG	3 cut(s)	37, 365, 876
BstNSI	RCATGY	1 cut(s)	553
BstSCI	CCNGG	4 cut(s)	20, 35, 363, 874
BstSLI	GKGCMC	1 cut(s)	728
BstV1I	GCAGC	3 cut(s)	663, 754, 936
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BsuRI	GGCC	4 cut(s)	67, 99, 296, 690
BtrI	CACGTC	1 cut(s)	503
BtsCI	GGATG	8 cut(s)	31, 112, 199, 360, 477, 746, 897, 1055
BtsI	GCAGTG	2 cut(s)	561, 906
BtsIMutI	CAGTG	7 cut(s)	270, 438, 534, 561, 859, 906, 973
Cac8I	GCNNGC	3 cut(s)	345, 603, 772
CaiI	CAGNNNCTG	1 cut(s)	972
CciI	TCATGA	1 cut(s)	778
Cfr10I	RCCGGY	1 cut(s)	770
Cfr13I	GGNCC	4 cut(s)	97, 490, 984, 1052
Csp6I	GTAC	4 cut(s)	396, 547, 964, 1005
CspCI	CAANNNNNGTGG	2 cut(s)	1001, 1036
CviAII	CATG	7 cut(s)	85, 173, 199, 550, 589, 779, 928
CviQI	GTAC	4 cut(s)	396, 547, 964, 1005
DdeI	CTNAG	6 cut(s)	273, 658, 711, 851, 1001, 1029
DpnI	GATC	3 cut(s)	209, 935, 977
DpnII	GATC	3 cut(s)	207, 933, 975
DraIII	CACNNNGTG	1 cut(s)	442
DrdI	GACNNNNNNGTC	1 cut(s)	692
DseDI	GACNNNNNNGTC	1 cut(s)	692
EaeI	YGGCCR	2 cut(s)	65, 688
Eam1104I	CTCTTC	2 cut(s)	246, 743
EarI	CTCTTC	2 cut(s)	246, 743
Ecl136II	GAGCTC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	323
Eco32I	GATATC	1 cut(s)	820
Eco47I	GGWCC	3 cut(s)	490, 984, 1052
Eco53kI	GAGCTC	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	235
EcoRII	CCWGG	3 cut(s)	35, 363, 874
EcoRV	GATATC	1 cut(s)	820
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	7 cut(s)	88, 176, 202, 553, 592, 782, 931
FatI	CATG	7 cut(s)	84, 172, 198, 549, 588, 778, 927
FauNDI	CATATG	1 cut(s)	607
Fnu4HI	GCNGC	3 cut(s)	652, 768, 925
FokI	GGATG	8 cut(s)	38, 119, 206, 347, 464, 733, 904, 1042
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	3 cut(s)	652, 768, 925
FspBI	CTAG	2 cut(s)	51, 387
GluI	GCNGC	3 cut(s)	652, 768, 925
HaeIII	GGCC	4 cut(s)	67, 99, 296, 690
HapII	CCGG	2 cut(s)	21, 771
Hin1II	CATG	7 cut(s)	88, 176, 202, 553, 592, 782, 931
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	5 cut(s)	416, 433, 529, 717, 1046
HpaII	CCGG	2 cut(s)	21, 771
HphI	GGTGA	4 cut(s)	16, 131, 434, 547
Hpy166II	GTNNAC	2 cut(s)	555, 1066
Hpy188I	TCNGA	4 cut(s)	758, 824, 980, 1082
Hpy188III	TCNNGA	6 cut(s)	248, 488, 584, 683, 779, 973
Hpy8I	GTNNAC	2 cut(s)	555, 1066
HpyAV	CCTTC	6 cut(s)	97, 343, 449, 491, 586, 1018
HpyCH4III	ACNGT	3 cut(s)	132, 442, 968
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	2 cut(s)	605, 884
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 38, 365, 611
HpyF3I	CTNAG	6 cut(s)	273, 658, 711, 851, 1001, 1029
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	7 cut(s)	88, 176, 202, 553, 592, 782, 931
KroI	GCCGGC	1 cut(s)	770
KroNI	GCCGGC	1 cut(s)	772
Kzo9I	GATC	3 cut(s)	207, 933, 975
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	8 cut(s)	37, 240, 250, 283, 659, 707, 922, 952
Lsp1109I	GCAGC	3 cut(s)	663, 754, 936
LweI	GCATC	4 cut(s)	19, 97, 223, 505
MaeI	CTAG	2 cut(s)	51, 387
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	3 cut(s)	434, 503, 584
MalI	GATC	3 cut(s)	209, 935, 977
MboI	GATC	3 cut(s)	207, 933, 975
MboII	GAAGA	7 cut(s)	217, 257, 263, 538, 679, 730, 943
MfeI	CAATTG	1 cut(s)	702
MflI	RGATCY	1 cut(s)	207
MhlI	GDGCHC	5 cut(s)	237, 258, 414, 728, 852
MluCI	AATT	2 cut(s)	576, 702
MlyI	GAGTC	3 cut(s)	410, 442, 1055
MmeI	TCCRAC	2 cut(s)	766, 1036
MroNI	GCCGGC	1 cut(s)	770
MroXI	GAANNNNTTC	2 cut(s)	579, 1076
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	2 cut(s)	78, 758
MspI	CCGG	2 cut(s)	21, 771
MspR9I	CCNGG	4 cut(s)	22, 37, 365, 876
MunI	CAATTG	1 cut(s)	702
Mva1269I	GAATGC	1 cut(s)	774
MvaI	CCWGG	3 cut(s)	37, 365, 876
MwoI	GCNNNNNNNGC	4 cut(s)	17, 38, 365, 611
NaeI	GCCGGC	1 cut(s)	772
NciI	CCSGG	1 cut(s)	22
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	3 cut(s)	207, 933, 975
NgoMIV	GCCGGC	1 cut(s)	770
NlaIII	CATG	7 cut(s)	88, 176, 202, 553, 592, 782, 931
NlaIV	GGNNCC	4 cut(s)	279, 725, 948, 985
NmuCI	GTSAC	3 cut(s)	434, 503, 584
NspI	RCATGY	1 cut(s)	553
PagI	TCATGA	1 cut(s)	778
PasI	CCCWGGG	1 cut(s)	36
PciI	ACATGT	1 cut(s)	549
PciSI	GCTCTTC	1 cut(s)	246
PctI	GAATGC	1 cut(s)	774
PdiI	GCCGGC	1 cut(s)	772
PdmI	GAANNNNTTC	2 cut(s)	579, 1076
PfeI	GAWTC	2 cut(s)	529, 717
PkrI	GCNGC	3 cut(s)	653, 769, 926
PleI	GAGTC	3 cut(s)	410, 441, 1054
PpsI	GAGTC	3 cut(s)	410, 441, 1054
PscI	ACATGT	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	3 cut(s)	35, 363, 874
PspGI	CCWGG	3 cut(s)	35, 363, 874
PspN4I	GGNNCC	4 cut(s)	279, 725, 948, 985
PspPI	GGNCC	4 cut(s)	97, 490, 984, 1052
PstNI	CAGNNNCTG	1 cut(s)	972
PsuI	RGATCY	1 cut(s)	207
RsaI	GTAC	4 cut(s)	397, 548, 965, 1006
RsaNI	GTAC	4 cut(s)	396, 547, 964, 1005
RseI	CAYNNNNRTG	2 cut(s)	78, 758
SacI	GAGCTC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	3 cut(s)	652, 768, 925
Sau3AI	GATC	3 cut(s)	207, 933, 975
Sau96I	GGNCC	4 cut(s)	97, 490, 984, 1052
SchI	GAGTC	3 cut(s)	410, 442, 1055
ScrFI	CCNGG	4 cut(s)	22, 37, 365, 876
SduI	GDGCHC	5 cut(s)	237, 258, 414, 728, 852
SfaNI	GCATC	4 cut(s)	19, 97, 223, 505
SinI	GGWCC	3 cut(s)	490, 984, 1052
SmiMI	CAYNNNNRTG	2 cut(s)	78, 758
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
Sse9I	AATT	2 cut(s)	576, 702
SspMI	CTAG	2 cut(s)	51, 387
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	4 cut(s)	20, 35, 363, 874
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	3 cut(s)	132, 442, 968
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	1 cut(s)	414
TasI	AATT	2 cut(s)	576, 702
TatI	WGTACW	1 cut(s)	963
TfiI	GAWTC	2 cut(s)	529, 717
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	7 cut(s)	277, 445, 541, 568, 859, 913, 973
TseFI	GTSAC	3 cut(s)	434, 503, 584
TseI	GCWGC	3 cut(s)	651, 767, 924
Tsp45I	GTSAC	3 cut(s)	434, 503, 584
TspDTI	ATGAA	7 cut(s)	138, 539, 605, 639, 767, 818, 944
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	7 cut(s)	277, 445, 541, 568, 859, 913, 973
VpaK11BI	GGWCC	3 cut(s)	490, 984, 1052
XceI	RCATGY	1 cut(s)	553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
XmnI	GAANNNNTTC	2 cut(s)	579, 1076
XspI	CTAG	2 cut(s)	51, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.