Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016489

Physical Location & Seq

Genomic Coordinates Forward (+)

32504831 .. 32528095

Gene Structure 23265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG283400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGTTGGTATGGGGCAGAAGGATGCCTATGTAGGTGATGAAGCACAGTCTAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGTATAGTAAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACTTTCTACAATGAGCTCCGTGTTGCTCCTGAAGAGCACCCAGTTCTTCTTACTGAGGCTCCTCTTAACCCCAAGGCCAACAGAGAAAAGATGACGCAGATTATGTTTGAGACCTTCAATGTGCCCGCTATGTATGTTGCCATCCAGGCTGTTCTCTCCCTGTATGCTAGTGGTCGTACAACTGGTATTGTGCTTGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTACGAAGGTTATGCCCTCCCCCACGCCATCCTTCGTCTGGACCTTGCTGGACGTGACCTTACAGATGCTTTGATGAAGATTCTCACTGAAAGAGGGTACATGTTCACCACCACTGCTGAACGAGAAATTGTCCGTGACATGAAGGAGAAGCTTGCATATGTTGCCCTTGACTATGAACAAGAACTTGAGACTGCCAAGAGCAGCTCCTCAGTTGAGAAGAACTATGAGCTTCCTGACGGCCAAGTCATCACAATTGGAGCTGAGAGATTCAGGTGCCCAGAAGTCCTCTTCCAACCATCCCTCATCGGAATGGAAGCTGCCGGCATTCATGAGACTACCTATAACTCCATTATGAAGTGTGATGTGGATATCAGAAAAGACTTGTATGGCAACATTGTGCTCAGTGGAGGTTCAACTATGTTCCCTGGTATTGCAGACAGGATGAGCAAGGAAATCACTGCTCTTGCTCCAAGCAGCATGAAGATCAAGGTTGTGGCTCCACCAGAGAGGAAGTACAGTGTCTGGATCGGAGGGTCCATTCTTGCTTCCCTCAGTACCTTCCAACAGATGTGGATTTCTAAGGGAGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGGAAGTGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006950 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009611 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009845 GO:0009888 GO:0009941 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030312 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051301 GO:0055044 GO:0060560 GO:0070013 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090351 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

332

Amino Acids

37.07

Weight (kDa)

5.38

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	7 - 332	2e-129	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09810
fragaria_vesca	FvH4_1g23490
malus_domestica	MD01G1001600.v1.1
prunus_persica	Prupe.6G163400_v2.0.a1 Prupe.6G163400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118891
rosa_laevigata	RLG00000018431
rosa_multiflora	Rmu_sc0001653.1_g000037
rosa_roxburghii	Rroxscaffold_2G00124610
rosa_rugosa	Rorug02G0219400
rosa_samantha	Rh2BG288200 Rh2DG283400 Rh2DG302700
rosa_wichuraiana	Rw2G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	608
AccB1I	GGYRCC	1 cut(s)	639
AciI	CCGC	1 cut(s)	261
AclWI	GGATC	1 cut(s)	899
AcoI	YGGCCR	1 cut(s)	604
AcuI	CTGAAG	1 cut(s)	186
AdeI	CACNNNGTG	1 cut(s)	358
AfaI	GTAC	4 cut(s)	313, 464, 881, 922
AfiI	CCNNNNNNNGG	1 cut(s)	403
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	3 cut(s)	73, 253, 780
AjiI	CACGTC	1 cut(s)	419
AjnI	CCWGG	2 cut(s)	279, 790
AluBI	AGCT	6 cut(s)	151, 517, 570, 595, 626, 683
AluI	AGCT	6 cut(s)	151, 517, 570, 595, 626, 683
Alw21I	GWGCWC	3 cut(s)	153, 174, 768
Alw26I	GTCTC	3 cut(s)	239, 548, 692
AlwI	GGATC	1 cut(s)	899
AlwNI	CAGNNNCTG	1 cut(s)	888
AoxI	GGCC	2 cut(s)	210, 604
ApeKI	GCWGC	3 cut(s)	567, 683, 840
Asp700I	GAANNNNTTC	1 cut(s)	992
AspS9I	GGNCC	3 cut(s)	406, 900, 968
AsuHPI	GGTGA	3 cut(s)	47, 350, 463
AvaII	GGWCC	3 cut(s)	406, 900, 968
BaeGI	GKGCMC	2 cut(s)	261, 644
BanI	GGYRCC	1 cut(s)	639
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	3 cut(s)	153, 174, 768
BbvI	GCAGC	3 cut(s)	579, 670, 852
BccI	CCATC	5 cut(s)	284, 335, 401, 670, 979
BceAI	ACGGC	1 cut(s)	619
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	2 cut(s)	281, 792
BcoDI	GTCTC	3 cut(s)	239, 548, 692
BfaI	CTAG	1 cut(s)	303
BglI	GCCNNNNNGGC	1 cut(s)	281
BglII	AGATCT	1 cut(s)	123
BisI	GCNGC	3 cut(s)	568, 684, 841
BlsI	GCNGC	3 cut(s)	569, 685, 842
Bme1390I	CCNGG	2 cut(s)	281, 792
Bme18I	GGWCC	3 cut(s)	406, 900, 968
BmgBI	CACGTC	1 cut(s)	419
BmgT120I	GGNCC	3 cut(s)	406, 900, 968
BmiI	GGNNCC	4 cut(s)	195, 641, 864, 901
BmrFI	CCNGG	2 cut(s)	281, 792
BmrI	ACTGGG	2 cut(s)	115, 170
BmsI	GCATC	3 cut(s)	13, 139, 421
BmuI	ACTGGG	2 cut(s)	115, 170
BpuEI	CTTGAG	1 cut(s)	572
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	207, 790
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse118I	RCCGGY	1 cut(s)	686
Bse1I	ACTGG	3 cut(s)	110, 176, 322
BseBI	CCWGG	2 cut(s)	281, 792
BseDI	CCNNGG	2 cut(s)	207, 790
BseGI	GGATG	7 cut(s)	28, 115, 276, 393, 662, 813, 971
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	5 cut(s)	180, 588, 618, 781, 931
BseNI	ACTGG	3 cut(s)	110, 176, 322
BseRI	GAGGAG	2 cut(s)	186, 562
BseSI	GKGCMC	2 cut(s)	261, 644
BseXI	GCAGC	3 cut(s)	579, 670, 852
BshFI	GGCC	2 cut(s)	212, 606
BshNI	GGYRCC	1 cut(s)	639
BsiHKAI	GWGCWC	3 cut(s)	153, 174, 768
BsiSI	CCGG	1 cut(s)	687
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	3 cut(s)	239, 548, 692
BsmI	GAATGC	1 cut(s)	690
BsnI	GGCC	2 cut(s)	212, 606
Bso31I	GGTCTC	1 cut(s)	239
Bsp1286I	GDGCHC	5 cut(s)	153, 174, 261, 644, 768
Bsp143I	GATC	3 cut(s)	123, 849, 891
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	2 cut(s)	212, 606
BspCNI	CTCAG	5 cut(s)	181, 587, 619, 780, 930
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	4 cut(s)	195, 641, 864, 901
BspPI	GGATC	1 cut(s)	899
BspQI	GCTCTTC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	639
BspTNI	GGTCTC	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	686
BsrI	ACTGG	3 cut(s)	110, 176, 322
BssAI	RCCGGY	1 cut(s)	686
BssECI	CCNNGG	2 cut(s)	207, 790
BssMI	GATC	3 cut(s)	123, 849, 891
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	2 cut(s)	281, 792
Bst4CI	ACNGT	3 cut(s)	48, 358, 884
Bst6I	CTCTTC	2 cut(s)	162, 659
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstC8I	GCNNGC	3 cut(s)	261, 519, 688
BstDEI	CTNAG	6 cut(s)	189, 574, 627, 767, 917, 945
BstF5I	GGATG	7 cut(s)	28, 115, 276, 393, 662, 813, 971
BstKTI	GATC	3 cut(s)	126, 852, 894
BstMAI	GTCTC	3 cut(s)	239, 548, 692
BstMBI	GATC	3 cut(s)	123, 849, 891
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 527
BstNI	CCWGG	2 cut(s)	281, 792
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	2 cut(s)	279, 790
BstSLI	GKGCMC	2 cut(s)	261, 644
BstV1I	GCAGC	3 cut(s)	579, 670, 852
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	212, 606
BtrI	CACGTC	1 cut(s)	419
BtsCI	GGATG	7 cut(s)	28, 115, 276, 393, 662, 813, 971
BtsI	GCAGTG	2 cut(s)	477, 822
BtsIMutI	CAGTG	6 cut(s)	354, 450, 477, 775, 822, 889
Cac8I	GCNNGC	3 cut(s)	261, 519, 688
CaiI	CAGNNNCTG	1 cut(s)	888
CciI	TCATGA	1 cut(s)	694
Cfr10I	RCCGGY	1 cut(s)	686
Cfr13I	GGNCC	3 cut(s)	406, 900, 968
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	4 cut(s)	312, 463, 880, 921
CspCI	CAANNNNNGTGG	2 cut(s)	917, 952
CviAII	CATG	6 cut(s)	89, 115, 466, 505, 695, 844
CviQI	GTAC	4 cut(s)	312, 463, 880, 921
DdeI	CTNAG	6 cut(s)	189, 574, 627, 767, 917, 945
DpnI	GATC	3 cut(s)	125, 851, 893
DpnII	GATC	3 cut(s)	123, 849, 891
DraIII	CACNNNGTG	1 cut(s)	358
DrdI	GACNNNNNNGTC	1 cut(s)	608
DseDI	GACNNNNNNGTC	1 cut(s)	608
EaeI	YGGCCR	1 cut(s)	604
Eam1104I	CTCTTC	2 cut(s)	162, 659
EarI	CTCTTC	2 cut(s)	162, 659
Ecl136II	GAGCTC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	736
Eco47I	GGWCC	3 cut(s)	406, 900, 968
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	186
EcoICRI	GAGCTC	1 cut(s)	151
EcoRII	CCWGG	2 cut(s)	279, 790
EcoRV	GATATC	1 cut(s)	736
EcoT14I	CCWWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	6 cut(s)	92, 118, 469, 508, 698, 847
FatI	CATG	6 cut(s)	88, 114, 465, 504, 694, 843
FauI	CCCGC	1 cut(s)	268
FauNDI	CATATG	1 cut(s)	523
Fnu4HI	GCNGC	3 cut(s)	568, 684, 841
FokI	GGATG	7 cut(s)	35, 122, 263, 380, 649, 820, 958
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	3 cut(s)	568, 684, 841
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	3 cut(s)	568, 684, 841
HaeIII	GGCC	2 cut(s)	212, 606
HapII	CCGG	1 cut(s)	687
HgaI	GACGC	1 cut(s)	238
Hin1II	CATG	6 cut(s)	92, 118, 469, 508, 698, 847
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	5 cut(s)	332, 349, 445, 633, 962
HpaII	CCGG	1 cut(s)	687
HphI	GGTGA	3 cut(s)	47, 350, 463
Hpy166II	GTNNAC	2 cut(s)	471, 982
Hpy188I	TCNGA	4 cut(s)	674, 740, 896, 998
Hpy188III	TCNNGA	5 cut(s)	164, 404, 599, 695, 889
Hpy8I	GTNNAC	2 cut(s)	471, 982
HpyAV	CCTTC	6 cut(s)	13, 259, 365, 407, 502, 934
HpyCH4III	ACNGT	3 cut(s)	48, 358, 884
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	2 cut(s)	521, 800
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 527
HpyF3I	CTNAG	6 cut(s)	189, 574, 627, 767, 917, 945
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	6 cut(s)	92, 118, 469, 508, 698, 847
KroI	GCCGGC	1 cut(s)	686
KroNI	GCCGGC	1 cut(s)	688
Kzo9I	GATC	3 cut(s)	123, 849, 891
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	7 cut(s)	156, 166, 199, 575, 623, 838, 868
Lsp1109I	GCAGC	3 cut(s)	579, 670, 852
LweI	GCATC	3 cut(s)	13, 139, 421
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	3 cut(s)	350, 419, 500
MalI	GATC	3 cut(s)	125, 851, 893
MboI	GATC	3 cut(s)	123, 849, 891
MboII	GAAGA	7 cut(s)	133, 173, 179, 454, 595, 646, 859
MfeI	CAATTG	1 cut(s)	618
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	5 cut(s)	153, 174, 261, 644, 768
MluCI	AATT	2 cut(s)	492, 618
MlyI	GAGTC	3 cut(s)	326, 358, 971
MmeI	TCCRAC	2 cut(s)	682, 952
MroNI	GCCGGC	1 cut(s)	686
MroXI	GAANNNNTTC	1 cut(s)	992
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	674
MspI	CCGG	1 cut(s)	687
MspR9I	CCNGG	2 cut(s)	281, 792
MunI	CAATTG	1 cut(s)	618
Mva1269I	GAATGC	1 cut(s)	690
MvaI	CCWGG	2 cut(s)	281, 792
MwoI	GCNNNNNNNGC	2 cut(s)	281, 527
NaeI	GCCGGC	1 cut(s)	688
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	3 cut(s)	123, 849, 891
NgoMIV	GCCGGC	1 cut(s)	686
NlaIII	CATG	6 cut(s)	92, 118, 469, 508, 698, 847
NlaIV	GGNNCC	4 cut(s)	195, 641, 864, 901
NmuCI	GTSAC	3 cut(s)	350, 419, 500
NspI	RCATGY	1 cut(s)	469
PagI	TCATGA	1 cut(s)	694
PciI	ACATGT	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	162
PctI	GAATGC	1 cut(s)	690
PdiI	GCCGGC	1 cut(s)	688
PdmI	GAANNNNTTC	1 cut(s)	992
PfeI	GAWTC	2 cut(s)	445, 633
PkrI	GCNGC	3 cut(s)	569, 685, 842
PleI	GAGTC	3 cut(s)	326, 357, 970
PpsI	GAGTC	3 cut(s)	326, 357, 970
PscI	ACATGT	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	2 cut(s)	279, 790
PspGI	CCWGG	2 cut(s)	279, 790
PspN4I	GGNNCC	4 cut(s)	195, 641, 864, 901
PspPI	GGNCC	3 cut(s)	406, 900, 968
PstNI	CAGNNNCTG	1 cut(s)	888
PsuI	RGATCY	1 cut(s)	123
RsaI	GTAC	4 cut(s)	313, 464, 881, 922
RsaNI	GTAC	4 cut(s)	312, 463, 880, 921
RseI	CAYNNNNRTG	1 cut(s)	674
SacI	GAGCTC	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	3 cut(s)	568, 684, 841
Sau3AI	GATC	3 cut(s)	123, 849, 891
Sau96I	GGNCC	3 cut(s)	406, 900, 968
SchI	GAGTC	3 cut(s)	326, 358, 971
ScrFI	CCNGG	2 cut(s)	281, 792
SduI	GDGCHC	5 cut(s)	153, 174, 261, 644, 768
SfaNI	GCATC	3 cut(s)	13, 139, 421
SinI	GGWCC	3 cut(s)	406, 900, 968
SmiMI	CAYNNNNRTG	1 cut(s)	674
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	2 cut(s)	492, 618
SsiI	CCGC	1 cut(s)	261
SspMI	CTAG	1 cut(s)	303
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	279, 790
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	3 cut(s)	48, 358, 884
TaiI	ACGT	1 cut(s)	421
TasI	AATT	2 cut(s)	492, 618
TatI	WGTACW	1 cut(s)	879
TfiI	GAWTC	2 cut(s)	445, 633
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	6 cut(s)	361, 457, 484, 775, 829, 889
TseFI	GTSAC	3 cut(s)	350, 419, 500
TseI	GCWGC	3 cut(s)	567, 683, 840
Tsp45I	GTSAC	3 cut(s)	350, 419, 500
TspDTI	ATGAA	7 cut(s)	54, 455, 521, 555, 683, 734, 860
TspGWI	ACGGA	2 cut(s)	143, 488
TspRI	CASTG	6 cut(s)	361, 457, 484, 775, 829, 889
VpaK11BI	GGWCC	3 cut(s)	406, 900, 968
XceI	RCATGY	1 cut(s)	469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XmnI	GAANNNNTTC	1 cut(s)	992
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.