AT5G10780

CONTAINS InterPro DOMAIN s Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro IPR016687), Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013219
Physical Location & Seq
Forward (+)
3408209 .. 3410076
1868 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G10780.1

Sequence Viewer

Length: 543 bp
ATGGACAAAGGCAAAGCAGTGATGGGTACTGGTCGGAGATGGGCCGTCGAATTCTCCGATCAATCTACTGTTCCATCTTCCCGTGACATCCTCGATCCACCTGGCTTCTCTCGTGCCTCTCAGGAACAGGATGATTCAGCAAACAGCCGCCAAAAGAAAGACGCTGAAGCTACTTGGAAACTTCAGAAAGCGTGGGAAGTAGCGCAATCTCCATTTAAGAATTTGATGATGATGGGTTTCATGATGTGGATGGCTGGAAACACAGTTCATCTTTTTAGTATTGGTATTACTTTCTCTGCTCTTTGGCAGCCTATCAGTGCTCTTCAGAGTGTTGGAAAGATTTTTGAGCCATTCAAGGATAACAAAGTGGAACTACTTATGCCGAAATTAGTGTTCCTTGCCCTAAACCTTGGAGGGCTAGCTTTGGGTGTCTGGAAGCTTAACACTTTGGGGCTTCTTCCAACACATGCATCAGATTGGGTTTCATCTCTACCCCCTCCTCAGGAAGTTGAACACTCGGGCGGAGGATTTGTTTTCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1077

Protein Analysis

180

Amino Acids

19.91

Weight (kDa)

6.91

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMC4 PF06417 52 - 164 7.8e-40 ER membrane protein complex subunit 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10780
fragaria_vesca FvH4_3g24420 FvH4_6g27370
malus_domestica MD08G1052600.v1.1 MD15G1042900.v1.1
prunus_persica Prupe.1G396200_v2.0.a1
pyrus_communis pycom08g04390 pycom15g04000
rosa_chinensis RchiOBHm_Chr6g0299241
rosa_laevigata RLG00000011450
rosa_multiflora Rmu_sc0001434.1_g000007
rosa_roxburghii Rroxscaffold_7G00168860
rosa_rugosa Rorug06G0286500
rosa_samantha Rh6AG397800 Rh6BG406300 Rh6CG412400 Rh6DG399100
rosa_wichuraiana Rw6G034820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 148, 522
AclWI GGATC 1 cut(s) 89
AcsI RAATTY 2 cut(s) 50, 220
AcuI CTGAAG 3 cut(s) 167, 186, 308
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 502
AgsI TTSAA 2 cut(s) 355, 512
AjnI CCWGG 1 cut(s) 100
AloI GAACNNNNNNTCC 2 cut(s) 249, 281
AluBI AGCT 3 cut(s) 170, 422, 439
AluI AGCT 3 cut(s) 170, 422, 439
Alw21I GWGCWC 1 cut(s) 322
AlwI GGATC 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 517
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 1 cut(s) 307
ApoI RAATTY 2 cut(s) 50, 220
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 42
AsuNHI GCTAGC 1 cut(s) 418
AvaI CYCGRG 1 cut(s) 517
AxyI CCTNAGG 1 cut(s) 501
BauI CACGAG 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 1 cut(s) 319
BccI CCATC 5 cut(s) 16, 33, 82, 226, 244
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 102
BfaI CTAG 1 cut(s) 419
BisI GCNGC 2 cut(s) 148, 308
BlsI GCNGC 2 cut(s) 149, 309
Bme1390I CCNGG 1 cut(s) 102
BmeT110I CYCGRG 1 cut(s) 517
BmgT120I GGNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 479
BmtI GCTAGC 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 409
BsaXI ACNNNNNCTCC 1 cut(s) 516
Bsc4I CCNNNNNNNGG 1 cut(s) 502
Bse1I ACTGG 1 cut(s) 34
Bse21I CCTNAGG 1 cut(s) 501
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 409
BseGI GGATG 3 cut(s) 87, 136, 255
BseLI CCNNNNNNNGG 1 cut(s) 502
BseMII CTCAG 2 cut(s) 134, 515
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 489
BseXI GCAGC 1 cut(s) 319
BshFI GGCC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 322
BsiHKCI CYCGRG 1 cut(s) 517
BslI CCNNNNNNNGG 1 cut(s) 502
BsnI GGCC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 517
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 2 cut(s) 58, 94
BspACI CCGC 2 cut(s) 148, 522
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 2 cut(s) 133, 514
BspHI TCATGA 1 cut(s) 240
BspOI GCTAGC 1 cut(s) 422
BspPI GGATC 1 cut(s) 89
BspQI GCTCTTC 1 cut(s) 327
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 2 cut(s) 58, 94
BssSI CACGAG 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 409
Bst2BI CACGAG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 70, 265
Bst6I CTCTTC 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 2 cut(s) 120, 501
BstF5I GGATG 3 cut(s) 87, 136, 255
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 2 cut(s) 61, 97
BstMBI GATC 2 cut(s) 58, 94
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 501
BsuRI GGCC 1 cut(s) 44
BtsCI GGATG 3 cut(s) 87, 136, 255
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 3 cut(s) 24, 322, 538
Cac8I GCNNGC 1 cut(s) 420
CciI TCATGA 1 cut(s) 240
CfoI GCGC 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 42
CseI GACGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 27
CviAII CATG 2 cut(s) 241, 467
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 2 cut(s) 120, 501
DpnI GATC 2 cut(s) 60, 96
DpnII GATC 2 cut(s) 58, 94
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EciI GGCGGA 1 cut(s) 537
Eco130I CCWWGG 1 cut(s) 409
Eco57I CTGAAG 3 cut(s) 167, 186, 308
Eco81I CCTNAGG 1 cut(s) 501
Eco88I CYCGRG 1 cut(s) 517
EcoRI GAATTC 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 409
EcoT22I ATGCAT 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 409
FaeI CATG 2 cut(s) 244, 470
FaiI YATR 3 cut(s) 242, 380, 468
FatI CATG 2 cut(s) 240, 466
Fnu4HI GCNGC 2 cut(s) 148, 308
FokI GGATG 3 cut(s) 74, 143, 262
Fsp4HI GCNGC 2 cut(s) 148, 308
FspBI CTAG 1 cut(s) 419
GlaI GCGC 1 cut(s) 204
GluI GCNGC 2 cut(s) 148, 308
HaeIII GGCC 1 cut(s) 44
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 205
Hin1II CATG 2 cut(s) 244, 470
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 1 cut(s) 134
Hpy188I TCNGA 5 cut(s) 36, 58, 186, 327, 475
Hpy188III TCNNGA 4 cut(s) 122, 241, 433, 503
Hpy99I CGWCG 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 70, 265
HpyCH4V TGCA 1 cut(s) 470
HpyF3I CTNAG 2 cut(s) 120, 501
Hsp92II CATG 2 cut(s) 244, 470
HspAI GCGC 1 cut(s) 203
Kzo9I GATC 2 cut(s) 58, 94
LguI GCTCTTC 1 cut(s) 327
LpnPI CCDG 8 cut(s) 15, 87, 107, 113, 114, 240, 418, 488
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 1 cut(s) 479
MaeI CTAG 1 cut(s) 419
MaeIII GTNAC 1 cut(s) 83
MalI GATC 2 cut(s) 60, 96
MboI GATC 2 cut(s) 58, 94
MboII GAAGA 3 cut(s) 69, 314, 449
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 3 cut(s) 50, 220, 386
MmeI TCCRAC 3 cut(s) 14, 313, 485
MnlI CCTC 6 cut(s) 101, 127, 407, 507, 510, 518
Mph1103I ATGCAT 1 cut(s) 472
MseI TTAA 2 cut(s) 216, 441
MspR9I CCNGG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 102
NdeII GATC 2 cut(s) 58, 94
NheI GCTAGC 1 cut(s) 418
NlaIII CATG 2 cut(s) 244, 470
NmuCI GTSAC 1 cut(s) 83
NsiI ATGCAT 1 cut(s) 472
NspI RCATGY 1 cut(s) 470
PagI TCATGA 1 cut(s) 240
PciSI GCTCTTC 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 149, 309
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspPI GGNCC 1 cut(s) 42
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 327
SaqAI TTAA 2 cut(s) 216, 441
SatI GCNGC 2 cut(s) 148, 308
Sau3AI GATC 2 cut(s) 58, 94
Sau96I GGNCC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 322
SetI ASST 5 cut(s) 103, 172, 411, 424, 441
SfaNI GCATC 1 cut(s) 479
Sse9I AATT 3 cut(s) 50, 220, 386
SsiI CCGC 2 cut(s) 148, 522
SspMI CTAG 1 cut(s) 419
StyD4I CCNGG 1 cut(s) 100
StyI CCWWGG 1 cut(s) 409
TaaI ACNGT 2 cut(s) 70, 265
TaqI TCGA 2 cut(s) 48, 93
TasI AATT 3 cut(s) 50, 220, 386
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 2 cut(s) 216, 441
Tru9I TTAA 2 cut(s) 216, 441
TscAI CASTG 2 cut(s) 24, 322
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 229, 257, 474
TspRI CASTG 2 cut(s) 24, 322
XapI RAATTY 2 cut(s) 50, 220
XceI RCATGY 1 cut(s) 470
XspI CTAG 1 cut(s) 419
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.