Rorug06G0286500

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013219
Physical Location & Seq
Reverse (-)
43680344 .. 43681566
1223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0286500.1

Sequence Viewer

Length: 399 bp
ATGTTGAAGAGCACAAATGCAAATGAGGCTGCAGCCAAGATAACAGCTCTCGTCGTAGATGACAGCAGGATCAACCAAAGTATTCACCGCAGGCTCTTGGAGAATCTTGGCATTGAAAACCAAGTCGCAGGTAACGGAAAAGAAGCTGTTGATGTCCACTGCTCTGGCAAACAGTTTGATCTTATACTGATGGACATGGACATGCCTATCATGAATGGCATTGAGGCCACCAGGACACTGCGTGCAATGGGGATTCGAAGTACGATTGCTGGTGTATCATCACATGCTCACAACGAAAATATACAAGAGTTTGTGAATGCAGGACTAGATGACTACCAAGAGAAGCCCTTAACCATTTCTAAGCTAGTTTCCATCCTCCAGAAGGTGAATATCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1077

Protein Analysis

132

Amino Acids

14.46

Weight (kDa)

5.75

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 17 - 126 1.4e-22 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10780
fragaria_vesca FvH4_3g24420 FvH4_6g27370
malus_domestica MD08G1052600.v1.1 MD15G1042900.v1.1
prunus_persica Prupe.1G396200_v2.0.a1
pyrus_communis pycom08g04390 pycom15g04000
rosa_chinensis RchiOBHm_Chr6g0299241
rosa_laevigata RLG00000011450
rosa_multiflora Rmu_sc0001434.1_g000007
rosa_roxburghii Rroxscaffold_7G00168860
rosa_rugosa Rorug06G0286500
rosa_samantha Rh6AG397800 Rh6BG406300 Rh6CG412400 Rh6DG399100
rosa_wichuraiana Rw6G034820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 119
AciI CCGC 1 cut(s) 88
AclWI GGATC 1 cut(s) 77
AdeI CACNNNGTG 1 cut(s) 242
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 2 cut(s) 7, 116
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 3 cut(s) 47, 146, 364
AluI AGCT 3 cut(s) 47, 146, 364
Alw21I GWGCWC 1 cut(s) 14
AlwI GGATC 1 cut(s) 77
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 2 cut(s) 29, 32
AsuHPI GGTGA 2 cut(s) 77, 397
AsuII TTCGAA 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 2 cut(s) 16, 44
BccI CCATC 2 cut(s) 184, 380
BciT130I CCWGG 1 cut(s) 232
BfaI CTAG 3 cut(s) 326, 365, 397
BfmI CTRYAG 1 cut(s) 30
BfuAI ACCTGC 1 cut(s) 119
BisI GCNGC 2 cut(s) 30, 33
BlsI GCNGC 2 cut(s) 31, 34
Bme1390I CCNGG 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 362
Bpu14I TTCGAA 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse3DI GCAATG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 232
BseGI GGATG 1 cut(s) 372
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMI GCAATG 1 cut(s) 252
BseXI GCAGC 2 cut(s) 16, 44
BshFI GGCC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 382
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 1 cut(s) 227
Bsp119I TTCGAA 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 2 cut(s) 69, 178
BspACI CCGC 1 cut(s) 88
BspANI GGCC 1 cut(s) 227
BspHI TCATGA 1 cut(s) 210
BspMAI CTGCAG 1 cut(s) 34
BspMI ACCTGC 1 cut(s) 119
BspPI GGATC 1 cut(s) 77
BspQI GCTCTTC 1 cut(s) 2
BspT104I TTCGAA 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 252
BssMI GATC 2 cut(s) 69, 178
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 174
Bst6I CTCTTC 1 cut(s) 2
BstBI TTCGAA 1 cut(s) 256
BstC8I GCNNGC 2 cut(s) 92, 243
BstDEI CTNAG 1 cut(s) 360
BstENI CCTNNNNNAGG 1 cut(s) 380
BstF5I GGATG 1 cut(s) 372
BstKTI GATC 2 cut(s) 72, 181
BstMBI GATC 2 cut(s) 69, 178
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 1 cut(s) 232
BstNSI RCATGY 2 cut(s) 205, 287
BstSCI CCNGG 1 cut(s) 230
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 16, 44
BstXI CCANNNNNNTGG 1 cut(s) 164
BsuRI GGCC 1 cut(s) 227
BtsCI GGATG 1 cut(s) 372
BtsI GCAGTG 2 cut(s) 157, 236
BtsIMutI CAGTG 2 cut(s) 157, 236
BveI ACCTGC 1 cut(s) 119
Cac8I GCNNGC 2 cut(s) 92, 243
CciI TCATGA 1 cut(s) 210
Csp6I GTAC 1 cut(s) 261
CviAII CATG 4 cut(s) 196, 202, 211, 284
CviJI RGCY 8 cut(s) 29, 35, 47, 94, 146, 227, 346, 364
CviKI_1 RGCY 8 cut(s) 29, 35, 47, 94, 146, 227, 346, 364
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 1 cut(s) 360
DpnI GATC 2 cut(s) 71, 180
DpnII GATC 2 cut(s) 69, 178
DraIII CACNNNGTG 1 cut(s) 242
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
EcoNI CCTNNNNNAGG 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 230
FaeI CATG 4 cut(s) 199, 205, 214, 287
FaiI YATR 6 cut(s) 185, 197, 203, 212, 285, 302
FatI CATG 4 cut(s) 195, 201, 210, 283
Fnu4HI GCNGC 2 cut(s) 30, 33
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 2 cut(s) 30, 33
FspBI CTAG 3 cut(s) 326, 365, 397
GluI GCNGC 2 cut(s) 30, 33
GsuI CTGGAG 1 cut(s) 362
HaeIII GGCC 1 cut(s) 227
Hin1II CATG 4 cut(s) 199, 205, 214, 287
HinfI GANTC 2 cut(s) 103, 253
HphI GGTGA 2 cut(s) 77, 397
Hpy166II GTNNAC 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 211, 379
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 376
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4V TGCA 4 cut(s) 20, 32, 245, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 360
Hsp92II CATG 4 cut(s) 199, 205, 214, 287
Kzo9I GATC 2 cut(s) 69, 178
LguI GCTCTTC 1 cut(s) 2
LpnPI CCDG 9 cut(s) 52, 76, 114, 150, 217, 244, 255, 306, 392
Lsp1109I GCAGC 2 cut(s) 16, 44
MaeI CTAG 3 cut(s) 326, 365, 397
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 71, 180
MboI GATC 2 cut(s) 69, 178
MboII GAAGA 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 14
MnlI CCTC 3 cut(s) 19, 217, 386
MseI TTAA 1 cut(s) 350
MslI CAYNNNNRTG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 232
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeII GATC 2 cut(s) 69, 178
NlaIII CATG 4 cut(s) 199, 205, 214, 287
NspI RCATGY 2 cut(s) 205, 287
NspV TTCGAA 1 cut(s) 256
PagI TCATGA 1 cut(s) 210
PciSI GCTCTTC 1 cut(s) 2
PctI GAATGC 1 cut(s) 322
PfeI GAWTC 2 cut(s) 103, 253
PkrI GCNGC 2 cut(s) 31, 34
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PstI CTGCAG 1 cut(s) 34
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
RseI CAYNNNNRTG 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 2
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 2 cut(s) 30, 33
Sau3AI GATC 2 cut(s) 69, 178
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 1 cut(s) 14
SetI ASST 5 cut(s) 49, 133, 148, 366, 387
SfcI CTRYAG 1 cut(s) 30
SfuI TTCGAA 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 200
SsiI CCGC 1 cut(s) 88
SspMI CTAG 3 cut(s) 326, 365, 397
StyD4I CCNGG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 256
TfiI GAWTC 2 cut(s) 103, 253
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 2 cut(s) 164, 243
TseI GCWGC 2 cut(s) 29, 32
TspDTI ATGAA 1 cut(s) 227
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 2 cut(s) 164, 243
XagI CCTNNNNNAGG 1 cut(s) 380
XceI RCATGY 2 cut(s) 205, 287
XspI CTAG 3 cut(s) 326, 365, 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.