Prupe.1G396200_v2.0.a1

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013219
Physical Location & Seq
Reverse (-)
35139575 .. 35142908
3334 bp
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UTR
Exon/CDS
Intron
Prupe.1G396200.1

Sequence Viewer

Length: 543 bp
ATGGAGAAGGGAAAGGGAGTGATGGGAGCAGGTCGAAGATGGGCCGTTGACTTGACTGACAACTCTACCTCCCCTTCTTCCCGCGACGTTCCTGATCCTCCTGGCTTCTCTCGCACCCCCCTCGAACAGGACGATTCAACTGTGAGTCGCCAGAAGAAGGATGCCGAATCTACTTGGAAAGCTCAGAAAGCTTGGGAAGTTGCGCAGACCCCATTCAAGAATTTGCTAATGATGGGCTTCATGATGTGGATGGCTGGAAGTACAGTGCATTTGTTTAGCATTGGAATCACATTTTCTGCTCTTTGGCAGCCCATAAGTGCCTTACAGGGTGTAGGAAAGGTTTTTGAGCCTTACAAGGACAGCAAAGTAGATCTTATTGCCCCAAAGTTGCTATTCATTGCCCTTAATTTGGGGGGTTTAGCACTGGGTGTTTGGAAGCTTAACACTTTGGGGTTGCTTCCTACACATGCATCCGATTGGGTTTCATCCTTACCCCCTGCTCAGGAGGTTGAGTACTCAGGTGGTGGCATTCCTCTATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1077

Protein Analysis

181

Amino Acids

19.61

Weight (kDa)

6.73

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10780
fragaria_vesca FvH4_3g24420 FvH4_6g27370
malus_domestica MD08G1052600.v1.1 MD15G1042900.v1.1
prunus_persica Prupe.1G396200_v2.0.a1
pyrus_communis pycom08g04390 pycom15g04000
rosa_chinensis RchiOBHm_Chr6g0299241
rosa_laevigata RLG00000011450
rosa_multiflora Rmu_sc0001434.1_g000007
rosa_roxburghii Rroxscaffold_7G00168860
rosa_rugosa Rorug06G0286500
rosa_samantha Rh6AG397800 Rh6BG406300 Rh6CG412400 Rh6DG399100
rosa_wichuraiana Rw6G034820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 204
Acc36I ACCTGC 1 cut(s) 20
AccII CGCG 1 cut(s) 84
AciI CCGC 1 cut(s) 82
AclWI GGATC 1 cut(s) 89
AcsI RAATTY 1 cut(s) 220
AdeI CACNNNGTG 1 cut(s) 428
AfaI GTAC 2 cut(s) 262, 515
AfiI CCNNNNNNNGG 4 cut(s) 127, 157, 409, 502
AgsI TTSAA 2 cut(s) 138, 217
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 3 cut(s) 182, 191, 439
AluI AGCT 3 cut(s) 182, 191, 439
AlwI GGATC 1 cut(s) 89
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 1 cut(s) 307
ApoI RAATTY 1 cut(s) 220
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 319
BccI CCATC 4 cut(s) 16, 33, 226, 244
BceAI ACGGC 1 cut(s) 29
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 1 cut(s) 102
BfuAI ACCTGC 1 cut(s) 20
BglII AGATCT 1 cut(s) 370
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
BmcAI AGTACT 1 cut(s) 515
Bme1390I CCNGG 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 102
BmrI ACTGGG 1 cut(s) 434
BmsI GCATC 2 cut(s) 151, 479
BmuI ACTGGG 1 cut(s) 434
Bpu10I CCTNAGC 1 cut(s) 501
BsaXI ACNNNNNCTCC 4 cut(s) 53, 83, 497, 527
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 157, 409, 502
Bse1I ACTGG 1 cut(s) 429
Bse3DI GCAATG 1 cut(s) 396
BseBI CCWGG 1 cut(s) 102
BseGI GGATG 4 cut(s) 166, 255, 470, 485
BseLI CCNNNNNNNGG 4 cut(s) 127, 157, 409, 502
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 3 cut(s) 197, 515, 531
BseNI ACTGG 1 cut(s) 429
BseXI GCAGC 1 cut(s) 319
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 1 cut(s) 44
BslI CCNNNNNNNGG 4 cut(s) 127, 157, 409, 502
BsmI GAATGC 1 cut(s) 528
BsnI GGCC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 94, 370
BspACI CCGC 1 cut(s) 82
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 3 cut(s) 196, 514, 530
BspFNI CGCG 1 cut(s) 84
BspHI TCATGA 1 cut(s) 240
BspMI ACCTGC 1 cut(s) 20
BspPI GGATC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 396
BsrI ACTGG 1 cut(s) 429
BssMI GATC 2 cut(s) 94, 370
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 142, 265
BstDEI CTNAG 3 cut(s) 183, 501, 517
BstENI CCTNNNNNAGG 1 cut(s) 125
BstF5I GGATG 4 cut(s) 166, 255, 470, 485
BstFNI CGCG 1 cut(s) 84
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 2 cut(s) 97, 373
BstMBI GATC 2 cut(s) 94, 370
BstMWI GCNNNNNNNGC 2 cut(s) 111, 188
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 100
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 319
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 1 cut(s) 44
BtsCI GGATG 4 cut(s) 166, 255, 470, 485
BtsIMutI CAGTG 2 cut(s) 270, 422
BveI ACCTGC 1 cut(s) 20
CciI TCATGA 1 cut(s) 240
CfoI GCGC 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 2 cut(s) 261, 514
CviAII CATG 2 cut(s) 241, 467
CviJI RGCY 9 cut(s) 44, 105, 182, 191, 237, 254, 310, 349, 439
CviKI_1 RGCY 9 cut(s) 44, 105, 182, 191, 237, 254, 310, 349, 439
CviQI GTAC 2 cut(s) 261, 514
DdeI CTNAG 3 cut(s) 183, 501, 517
DpnI GATC 2 cut(s) 96, 372
DpnII GATC 2 cut(s) 94, 370
DraIII CACNNNGTG 1 cut(s) 428
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 472
FaeI CATG 2 cut(s) 244, 470
FaiI YATR 4 cut(s) 242, 314, 468, 538
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FatI CATG 2 cut(s) 240, 466
FauI CCCGC 1 cut(s) 89
Fnu4HI GCNGC 1 cut(s) 308
FokI GGATG 4 cut(s) 173, 262, 457, 472
Fsp4HI GCNGC 1 cut(s) 308
FspI TGCGCA 1 cut(s) 204
GlaI GCGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 308
HaeIII GGCC 1 cut(s) 44
HhaI GCGC 1 cut(s) 205
Hin1II CATG 2 cut(s) 244, 470
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HindIII AAGCTT 2 cut(s) 189, 437
HinfI GANTC 4 cut(s) 134, 145, 167, 285
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 186, 475
Hpy188III TCNNGA 4 cut(s) 92, 217, 241, 503
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 84, 151
HpyCH4III ACNGT 2 cut(s) 142, 265
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 2 cut(s) 268, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 188
HpyF3I CTNAG 3 cut(s) 183, 501, 517
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 2 cut(s) 244, 470
HspAI GCGC 1 cut(s) 203
Kzo9I GATC 2 cut(s) 94, 370
LmnI GCTCC 1 cut(s) 26
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 2 cut(s) 151, 479
MaeII ACGT 1 cut(s) 87
MalI GATC 2 cut(s) 96, 372
MboI GATC 2 cut(s) 94, 370
MboII GAAGA 3 cut(s) 48, 69, 166
MflI RGATCY 1 cut(s) 370
MluCI AATT 2 cut(s) 220, 406
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 5 cut(s) 79, 108, 131, 499, 543
Mph1103I ATGCAT 1 cut(s) 472
MseI TTAA 2 cut(s) 405, 441
MspR9I CCNGG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 528
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 111, 188
NdeII GATC 2 cut(s) 94, 370
NlaIII CATG 2 cut(s) 244, 470
NsbI TGCGCA 1 cut(s) 204
NsiI ATGCAT 1 cut(s) 472
NspI RCATGY 1 cut(s) 470
PagI TCATGA 1 cut(s) 240
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PctI GAATGC 1 cut(s) 528
PfeI GAWTC 3 cut(s) 134, 167, 285
PkrI GCNGC 1 cut(s) 309
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspPI GGNCC 1 cut(s) 42
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 2 cut(s) 262, 515
RsaNI GTAC 2 cut(s) 261, 514
SaqAI TTAA 2 cut(s) 405, 441
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 2 cut(s) 94, 370
Sau96I GGNCC 1 cut(s) 42
ScaI AGTACT 1 cut(s) 515
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 102
SetI ASST 9 cut(s) 34, 71, 90, 184, 193, 342, 441, 510, 523
SfaNI GCATC 2 cut(s) 151, 479
Sse9I AATT 2 cut(s) 220, 406
SsiI CCGC 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 100
TaaI ACNGT 2 cut(s) 142, 265
TaiI ACGT 1 cut(s) 90
TaqI TCGA 2 cut(s) 34, 123
TasI AATT 2 cut(s) 220, 406
TatI WGTACW 2 cut(s) 260, 513
TfiI GAWTC 3 cut(s) 134, 167, 285
Tru1I TTAA 2 cut(s) 405, 441
Tru9I TTAA 2 cut(s) 405, 441
TscAI CASTG 2 cut(s) 270, 429
TseI GCWGC 1 cut(s) 307
TspDTI ATGAA 3 cut(s) 229, 385, 474
TspRI CASTG 2 cut(s) 270, 429
XagI CCTNNNNNAGG 1 cut(s) 125
XapI RAATTY 1 cut(s) 220
XceI RCATGY 1 cut(s) 470
ZrmI AGTACT 1 cut(s) 515
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.