Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006073

Physical Location & Seq

Genomic Coordinates Forward (+)

3550300 .. 3552255

Gene Structure 1956 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTTTGCGGCGGAGAATGGTCTCAAAGGAGATCCAAGGCTTGAAGCTATATCAGCAGCCATTAGGGTTGTCCCTAATTTCCCTAAGAAAGGGATTATGTTTCAGGACATAACTACGTTGTTACTGGATCACAAGGCGTTTAAACACACAATTGATATCTTCGTAGATCGTTACAAAGACATGCAAATCTCTGTCGTTGCTGGAGTTGAAGCAAGAGGTTTCTTGTTTGGTCCTTCCATTGCATTAGCCATCGGCGCAAAGTTTATCCCTTTGCGTAAACCAGGAAAATTACCAGGGAAAGTGATATCGGAGTCTTATGAGCTCGAGTATGGGCATGACCGTTTAGAGATGCATGTTGGCGCTGTTGAGCCACGCGAACGCGTCATTATCATTGATGATCTTGTTGCTACTGGCGGCACTCTTTCTGCCGCAATGAGCCTATTGGAGAGCCAAGGAGCTGAAGTTGTTGAGTGTGCTTGTGTTATTGGCTTGCCTGAAGTCAAGGGGCAACACAAGCTCAAAGGGAAGCCGCTTTATGTGTTGGTGGAGCCTAGTGGATTAGATGAGTTCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0006139 GO:0006144 GO:0006168 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0008150 GO:0008152 GO:0008509 GO:0009058 GO:0009112 GO:0009113 GO:0009987 GO:0012505 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0022857 GO:0034220 GO:0034641 GO:0034654 GO:0035435 GO:0042440 GO:0043094 GO:0043096 GO:0043101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046083 GO:0046084 GO:0046112 GO:0046148 GO:0046483 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0098656 GO:0098660 GO:0098661 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

191

Amino Acids

20.76

Weight (kDa)

5.97

Isoelectric Point (pI)

20.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran	PF00156	44 - 148	3.9e-09	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80050 AT1G80050 AT5G11160 AT5G11160
fragaria_vesca	FvH4_2g28940 FvH4_2g28940 FvH4_2g28940
malus_domestica	MD08G1155300.v1.1 MD15G1126400.v1.1
prunus_persica	Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1
pyrus_communis	pycom08g12780 pycom15g11410
rosa_chinensis	RchiOBHm_Chr6g0297761
rosa_laevigata	RLG00000011564
rosa_multiflora	Rmu_sc0002674.1_g000009
rosa_roxburghii	Rroxscaffold_7G00170220 Rroxscaffold_7G00179070
rosa_rugosa	Rorug06G0275400
rosa_samantha	Rh6AG385800 Rh6BG394400 Rh6CG400100 Rh6DG386600
rosa_wichuraiana	Rw6G033630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	375, 381
AciI	CCGC	5 cut(s)	8, 11, 414, 429, 530
AclWI	GGATC	2 cut(s)	26, 135
AcuI	CTGAAG	2 cut(s)	480, 516
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	44, 209
AjnI	CCWGG	2 cut(s)	280, 292
AluBI	AGCT	4 cut(s)	47, 322, 458, 517
AluI	AGCT	4 cut(s)	47, 322, 458, 517
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	2 cut(s)	26, 135
Ama87I	CYCGRG	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	56
AspLEI	GCGC	2 cut(s)	257, 362
AspS9I	GGNCC	1 cut(s)	230
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	257
BciT130I	CCWGG	2 cut(s)	282, 294
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	1 cut(s)	552
BfoI	RGCGCY	1 cut(s)	363
BisI	GCNGC	5 cut(s)	9, 57, 415, 429, 530
BlsI	GCNGC	5 cut(s)	10, 58, 416, 430, 531
Bme1390I	CCNGG	2 cut(s)	282, 294
Bme18I	GGWCC	1 cut(s)	230
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	549
BmrFI	CCNGG	2 cut(s)	282, 294
BmsI	GCATC	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	3 cut(s)	35, 293, 451
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	2 cut(s)	129, 415
Bse3DI	GCAATG	2 cut(s)	237, 438
BseBI	CCWGG	2 cut(s)	282, 294
BseDI	CCNNGG	3 cut(s)	35, 293, 451
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	2 cut(s)	237, 438
BseNI	ACTGG	2 cut(s)	129, 415
BseXI	GCAGC	1 cut(s)	68
Bsh1236I	CGCG	2 cut(s)	375, 381
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	26
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	4 cut(s)	31, 127, 166, 397
BspACI	CCGC	5 cut(s)	8, 11, 414, 429, 530
BspFNI	CGCG	2 cut(s)	375, 381
BspLI	GGNNCC	1 cut(s)	549
BspPI	GGATC	2 cut(s)	26, 135
BspTNI	GGTCTC	1 cut(s)	26
BsrDI	GCAATG	2 cut(s)	237, 438
BsrI	ACTGG	2 cut(s)	129, 415
BssECI	CCNNGG	3 cut(s)	35, 293, 451
BssMI	GATC	4 cut(s)	31, 127, 166, 397
BssT1I	CCWWGG	2 cut(s)	35, 451
Bst2UI	CCWGG	2 cut(s)	282, 294
Bst4CI	ACNGT	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	491
BstDEI	CTNAG	1 cut(s)	84
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstFNI	CGCG	2 cut(s)	375, 381
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	2 cut(s)	257, 362
BstKTI	GATC	4 cut(s)	34, 130, 169, 400
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	4 cut(s)	31, 127, 166, 397
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 254, 514
BstNI	CCWGG	2 cut(s)	282, 294
BstNSI	RCATGY	2 cut(s)	184, 356
BstSCI	CCNGG	2 cut(s)	280, 292
BstUI	CGCG	2 cut(s)	375, 381
BstV1I	GCAGC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	491
CfoI	GCGC	2 cut(s)	257, 362
Cfr13I	GGNCC	1 cut(s)	230
CseI	GACGC	1 cut(s)	370
CviAII	CATG	3 cut(s)	181, 335, 353
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	4 cut(s)	33, 129, 168, 399
DpnII	GATC	4 cut(s)	31, 127, 166, 397
DraI	TTTAAA	1 cut(s)	142
EciI	GGCGGA	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	322
Eco130I	CCWWGG	2 cut(s)	35, 451
Eco24I	GRGCYC	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	26
Eco32I	GATATC	2 cut(s)	157, 306
Eco47I	GGWCC	1 cut(s)	230
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	2 cut(s)	480, 516
Eco88I	CYCGRG	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	322
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoRII	CCWGG	2 cut(s)	280, 292
EcoRV	GATATC	2 cut(s)	157, 306
EcoT14I	CCWWGG	2 cut(s)	35, 451
EcoT22I	ATGCAT	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	2 cut(s)	35, 451
FaeI	CATG	3 cut(s)	184, 338, 356
FaiI	YATR	9 cut(s)	50, 98, 110, 182, 318, 330, 336, 354, 537
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	3 cut(s)	180, 334, 352
Fnu4HI	GCNGC	5 cut(s)	9, 57, 415, 429, 530
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	5 cut(s)	9, 57, 415, 429, 530
FspBI	CTAG	1 cut(s)	552
GlaI	GCGC	2 cut(s)	256, 361
GluI	GCNGC	5 cut(s)	9, 57, 415, 429, 530
GsuI	CTGGAG	1 cut(s)	222
HaeII	RGCGCY	1 cut(s)	363
HgaI	GACGC	1 cut(s)	370
HhaI	GCGC	2 cut(s)	257, 362
Hin1II	CATG	3 cut(s)	184, 338, 356
Hin6I	GCGC	2 cut(s)	255, 360
HinP1I	GCGC	2 cut(s)	255, 360
HinfI	GANTC	1 cut(s)	311
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	1 cut(s)	310
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	3 cut(s)	184, 242, 352
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 254, 514
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	116
Hsp92II	CATG	3 cut(s)	184, 338, 356
HspAI	GCGC	2 cut(s)	255, 360
Kzo9I	GATC	4 cut(s)	31, 127, 166, 397
LmnI	GCTCC	2 cut(s)	455, 547
LpnPI	CCDG	9 cut(s)	89, 110, 186, 267, 279, 294, 306, 396, 507
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	1 cut(s)	552
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	2 cut(s)	120, 170
MalI	GATC	4 cut(s)	33, 129, 168, 399
MboI	GATC	4 cut(s)	31, 127, 166, 397
MboII	GAAGA	1 cut(s)	151
MfeI	CAATTG	1 cut(s)	150
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	3 cut(s)	76, 150, 287
MluI	ACGCGT	1 cut(s)	379
MlyI	GAGTC	1 cut(s)	320
MnlI	CCTC	1 cut(s)	209
Mph1103I	ATGCAT	1 cut(s)	354
MseI	TTAA	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	282, 294
MssI	GTTTAAAC	1 cut(s)	142
MunI	CAATTG	1 cut(s)	150
MvaI	CCWGG	2 cut(s)	282, 294
MvnI	CGCG	2 cut(s)	375, 381
MwoI	GCNNNNNNNGC	3 cut(s)	53, 254, 514
NdeII	GATC	4 cut(s)	31, 127, 166, 397
NlaIII	CATG	3 cut(s)	184, 338, 356
NlaIV	GGNNCC	1 cut(s)	549
NsiI	ATGCAT	1 cut(s)	354
NspI	RCATGY	2 cut(s)	184, 356
PaeR7I	CTCGAG	1 cut(s)	323
PkrI	GCNGC	5 cut(s)	10, 58, 416, 430, 531
PleI	GAGTC	1 cut(s)	319
PmeI	GTTTAAAC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	319
Psp124BI	GAGCTC	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	280, 292
PspGI	CCWGG	2 cut(s)	280, 292
PspN4I	GGNNCC	1 cut(s)	549
PspPI	GGNCC	1 cut(s)	230
PspXI	VCTCGAGB	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	31
SacI	GAGCTC	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	5 cut(s)	9, 57, 415, 429, 530
Sau3AI	GATC	4 cut(s)	31, 127, 166, 397
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	2 cut(s)	282, 294
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	6 cut(s)	49, 119, 220, 324, 460, 519
SfaNI	GCATC	1 cut(s)	339
Sfr274I	CTCGAG	1 cut(s)	323
SinI	GGWCC	1 cut(s)	230
SlaI	CTCGAG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	3 cut(s)	76, 150, 287
SsiI	CCGC	5 cut(s)	8, 11, 414, 429, 530
SspMI	CTAG	1 cut(s)	552
SstI	GAGCTC	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	280, 292
StyI	CCWWGG	2 cut(s)	35, 451
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	324
TasI	AATT	3 cut(s)	76, 150, 287
TauI	GCSGC	4 cut(s)	11, 417, 431, 532
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseI	GCWGC	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	230
XagI	CCTNNNNNAGG	1 cut(s)	87
XceI	RCATGY	2 cut(s)	184, 356
XhoI	CTCGAG	1 cut(s)	323
XspI	CTAG	1 cut(s)	552
Zsp2I	ATGCAT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.