Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006073

Physical Location & Seq

Genomic Coordinates Reverse (-)

58554399 .. 58557924

Gene Structure 3526 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG385800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTTTCAGGACATTACAACATTGTTGCTTGATCACAAGGCCTTCAAGCACACTGTCGACATTTTTGTTGATCGCTACAGAGACATGGACATCTCTGTTGTTGCCGGAGTGGAAGCCAGAGGATTCATGTTTGGTCCTGCAATTGCCTTAGCTATTGGTGCCAAGTTTGTTCCTTTACGTAAACCCAGAAAGTTGCCCGGAGAAGTAATTTCAGAAGCATATGAACTTGAATATGGAACTGATTGCTTGGAGATGCATGTTGGTGCTGTTCAGCCTGGAGAACGTGCATTGGTTATTGATGATTTAATAGCTACAGGTGGGACATTGTCGGCAGCAATAAGCCTTTTAGAGCGCGTGGGAGCTGAAGTGGTCGAATGTGCATGTGTTATTGGGTTGCCTGAGGTTAAGGGACAGTGCAGGCTTAATGGAAAGCCACTTTATATCCTTGTGGAGCCACGAGAGCTAGATAACTGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0006139 GO:0006144 GO:0006168 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0008150 GO:0008152 GO:0008509 GO:0009058 GO:0009112 GO:0009113 GO:0009987 GO:0012505 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0022857 GO:0034220 GO:0034641 GO:0034654 GO:0035435 GO:0042440 GO:0043094 GO:0043096 GO:0043101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046083 GO:0046084 GO:0046112 GO:0046148 GO:0046483 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0098656 GO:0098660 GO:0098661 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

159

Amino Acids

17.32

Weight (kDa)

4.95

Isoelectric Point (pI)

17.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran	PF00156	16 - 131	3.1e-16	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80050 AT1G80050 AT5G11160 AT5G11160
fragaria_vesca	FvH4_2g28940 FvH4_2g28940 FvH4_2g28940
malus_domestica	MD08G1155300.v1.1 MD15G1126400.v1.1
prunus_persica	Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1
pyrus_communis	pycom08g12780 pycom15g11410
rosa_chinensis	RchiOBHm_Chr6g0297761
rosa_laevigata	RLG00000011564
rosa_multiflora	Rmu_sc0002674.1_g000009
rosa_roxburghii	Rroxscaffold_7G00170220 Rroxscaffold_7G00179070
rosa_rugosa	Rorug06G0275400
rosa_samantha	Rh6AG385800 Rh6BG394400 Rh6CG400100 Rh6DG386600
rosa_wichuraiana	Rw6G033630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	57
AccII	CGCG	1 cut(s)	354
AcuI	CTGAAG	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	46, 230
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	4 cut(s)	152, 311, 362, 463
AluI	AGCT	4 cut(s)	152, 311, 362, 463
Alw26I	GTCTC	1 cut(s)	75
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	332
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	134
AsuC2I	CCSGG	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	134
AxyI	CCTNAGG	1 cut(s)	399
BanI	GGYRCC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	456
BbvI	GCAGC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	276
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	2 cut(s)	76, 312
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	2 cut(s)	198, 276
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	2 cut(s)	160, 453
BmrFI	CCNGG	2 cut(s)	198, 276
BmsI	GCATC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	148
BpuMI	CCSGG	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	179
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bse21I	CCTNAGG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	344
BsgI	GTGCAG	1 cut(s)	436
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	105, 198
BslFI	GGGAC	2 cut(s)	334, 423
BsmAI	GTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	334, 423
BsnI	GGCC	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	31, 70
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	391
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	2 cut(s)	160, 453
BspT107I	GGYRCC	1 cut(s)	158
BssMI	GATC	2 cut(s)	31, 70
BssSI	CACGAG	1 cut(s)	456
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	55, 414, 473
BstBAI	YACGTR	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	419
BstDEI	CTNAG	2 cut(s)	148, 399
BstFNI	CGCG	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	2 cut(s)	34, 73
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	2 cut(s)	31, 70
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 460
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	2 cut(s)	260, 384
BstSCI	CCNGG	2 cut(s)	196, 274
BstSFI	CTRYAG	2 cut(s)	76, 312
BstSNI	TACGTA	1 cut(s)	179
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	344
Bsu36I	CCTNAGG	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	41
BtsIMutI	CAGTG	2 cut(s)	51, 419
Cac8I	GCNNGC	1 cut(s)	419
CfoI	GCGC	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	134
CviAII	CATG	4 cut(s)	85, 127, 257, 381
DdeI	CTNAG	2 cut(s)	148, 399
DpnI	GATC	2 cut(s)	33, 72
DpnII	GATC	2 cut(s)	31, 70
Eco105I	TACGTA	1 cut(s)	179
Eco147I	AGGCCT	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	274
EcoT22I	ATGCAT	1 cut(s)	258
FaeI	CATG	4 cut(s)	88, 130, 260, 384
FaiI	YATR	8 cut(s)	86, 128, 220, 222, 234, 258, 382, 441
FaqI	GGGAC	2 cut(s)	334, 423
FatI	CATG	4 cut(s)	84, 126, 256, 380
FauNDI	CATATG	1 cut(s)	220
FbaI	TGATCA	1 cut(s)	31
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	1 cut(s)	333
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	2 cut(s)	105, 198
HhaI	GCGC	1 cut(s)	354
Hin1II	CATG	4 cut(s)	88, 130, 260, 384
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	1 cut(s)	123
HpaII	CCGG	2 cut(s)	105, 198
Hpy166II	GTNNAC	2 cut(s)	58, 182
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	8
Hpy8I	GTNNAC	2 cut(s)	58, 182
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	3 cut(s)	55, 414, 473
HpyCH4IV	ACGT	2 cut(s)	178, 283
HpyCH4V	TGCA	5 cut(s)	140, 256, 287, 380, 417
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 460
HpyF3I	CTNAG	2 cut(s)	148, 399
HpySE526I	ACGT	2 cut(s)	178, 283
Hsp92II	CATG	4 cut(s)	88, 130, 260, 384
HspAI	GCGC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	31, 70
LmnI	GCTCC	2 cut(s)	359, 451
Lsp1109I	GCAGC	1 cut(s)	344
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	2 cut(s)	178, 283
MalI	GATC	2 cut(s)	33, 72
MboI	GATC	2 cut(s)	31, 70
MfeI	CAATTG	1 cut(s)	141
MluCI	AATT	2 cut(s)	141, 207
MnlI	CCTC	2 cut(s)	113, 394
Mph1103I	ATGCAT	1 cut(s)	258
MseI	TTAA	3 cut(s)	305, 405, 423
MslI	CAYNNNNRTG	1 cut(s)	261
MspI	CCGG	2 cut(s)	105, 198
MspR9I	CCNGG	2 cut(s)	198, 276
MunI	CAATTG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	2 cut(s)	158, 460
NciI	CCSGG	1 cut(s)	198
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	2 cut(s)	31, 70
NlaIII	CATG	4 cut(s)	88, 130, 260, 384
NlaIV	GGNNCC	2 cut(s)	160, 453
NsiI	ATGCAT	1 cut(s)	258
NspI	RCATGY	2 cut(s)	260, 384
PceI	AGGCCT	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	123
PflFI	GACNNNGTC	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	334
Ppu21I	YACGTR	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	2 cut(s)	160, 453
PspPI	GGNCC	1 cut(s)	134
PsyI	GACNNNGTC	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	261
SalI	GTCGAC	1 cut(s)	56
SaqAI	TTAA	3 cut(s)	305, 405, 423
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	2 cut(s)	31, 70
Sau96I	GGNCC	1 cut(s)	134
ScrFI	CCNGG	2 cut(s)	198, 276
SetI	ASST	8 cut(s)	154, 181, 286, 313, 319, 364, 405, 465
SfaNI	GCATC	1 cut(s)	243
SfcI	CTRYAG	2 cut(s)	76, 312
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	261
SnaBI	TACGTA	1 cut(s)	179
Sse9I	AATT	2 cut(s)	141, 207
SseBI	AGGCCT	1 cut(s)	41
SspMI	CTAG	1 cut(s)	464
StuI	AGGCCT	1 cut(s)	41
StyD4I	CCNGG	2 cut(s)	196, 274
TaaI	ACNGT	3 cut(s)	55, 414, 473
TaiI	ACGT	2 cut(s)	181, 286
TaqI	TCGA	2 cut(s)	57, 372
TasI	AATT	2 cut(s)	141, 207
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	3 cut(s)	305, 405, 423
Tru9I	TTAA	3 cut(s)	305, 405, 423
TscAI	CASTG	2 cut(s)	58, 419
TseI	GCWGC	1 cut(s)	332
TspDTI	ATGAA	2 cut(s)	115, 237
TspRI	CASTG	2 cut(s)	58, 419
Tth111I	GACNNNGTC	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	134
XceI	RCATGY	2 cut(s)	260, 384
XmiI	GTMKAC	1 cut(s)	57
XspI	CTAG	1 cut(s)	464
Zsp2I	ATGCAT	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.