Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006073

Physical Location & Seq

Genomic Coordinates Forward (+)

11350109 .. 11353367

Gene Structure 3259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g12780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTTTGCAGCAGAAAATGGACTGAAAGGAGACCCAAGGCTCCAAGCCATATCAGAGGCCATCAGGGTTGTGCCTCACTTTCCAAAACCAGGAATAATGTTTCAAGACATAACAACATTGTTGCTTGATCACAAGACCTTCAAGCATGTTGTCGACATTTTTGTTGATCGCTACAGAGACATGGACATCTCTGTTGTTGCCGGAGTGGAAGCCAGAGGGTTCATGTTTGGTCCTTCAATTGCTTTAGCAATTGGTGCCAAGTTTGTCCCTTTACGTAAACCTAGAAAGTTGCCGGGAGAAGTAATTTCCGAAGCGTATGAGCTTGAGTACGGAACTGATTGCCTGGAAATGCACGTCGGTGCTGTTCAGCCCGGCGAACGTGCATTGGTAATTGATGATCTAATAGCTACCGGTGGGACCTTGTCAGCAGCAATAAGACTTTTAGAACGTGTCGGGGCTGAAGTGGTAGAATGCGGATGCGTTATTGGGTTGCCTGAGGTTAAGGGACAGTGCAGGCTTAATGGAAAGCCACTCTACATCCTTGTGGAGCCACGCGAGTTAGATAACGAGATCTGTTCGAGTTCTGCTTGGGCTGACTGCAGAAACAATGGCGCTTCACTCGAGCAAATGGCCGTGAATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0006139 GO:0006144 GO:0006168 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0008150 GO:0008152 GO:0008509 GO:0009058 GO:0009112 GO:0009113 GO:0009987 GO:0012505 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0022857 GO:0034220 GO:0034641 GO:0034654 GO:0035435 GO:0042440 GO:0043094 GO:0043096 GO:0043101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046083 GO:0046084 GO:0046112 GO:0046148 GO:0046483 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0098656 GO:0098660 GO:0098661 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

215

Amino Acids

23.29

Weight (kDa)

5.17

Isoelectric Point (pI)

18.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran	PF00156	44 - 163	9.2e-16	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80050 AT1G80050 AT5G11160 AT5G11160
fragaria_vesca	FvH4_2g28940 FvH4_2g28940 FvH4_2g28940
malus_domestica	MD08G1155300.v1.1 MD15G1126400.v1.1
prunus_persica	Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1
pyrus_communis	pycom08g12780 pycom15g11410
rosa_chinensis	RchiOBHm_Chr6g0297761
rosa_laevigata	RLG00000011564
rosa_multiflora	Rmu_sc0002674.1_g000009
rosa_roxburghii	Rroxscaffold_7G00170220 Rroxscaffold_7G00179070
rosa_rugosa	Rorug06G0275400
rosa_samantha	Rh6AG385800 Rh6BG394400 Rh6CG400100 Rh6DG386600
rosa_wichuraiana	Rw6G033630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	555
AciI	CCGC	1 cut(s)	474
AcoI	YGGCCR	1 cut(s)	630
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	448
AgeI	ACCGGT	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	104, 142, 237
AjiI	CACGTC	1 cut(s)	355
AjnI	CCWGG	2 cut(s)	88, 342
AleI	CACNNNNGTG	1 cut(s)	357
AluBI	AGCT	2 cut(s)	322, 407
AluI	AGCT	2 cut(s)	322, 407
Alw26I	GTCTC	2 cut(s)	24, 171
Ama87I	CYCGRG	1 cut(s)	620
AoxI	GGCC	2 cut(s)	57, 630
ApeKI	GCWGC	2 cut(s)	8, 428
AsiGI	ACCGGT	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	614
AspS9I	GGNCC	2 cut(s)	230, 417
AsuC2I	CCSGG	2 cut(s)	294, 372
AvaI	CYCGRG	1 cut(s)	620
AvaII	GGWCC	2 cut(s)	230, 417
AxyI	CCTNAGG	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	20, 440
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	617
BciT130I	CCWGG	2 cut(s)	90, 344
BclI	TGATCA	1 cut(s)	127
BcnI	CCSGG	2 cut(s)	294, 372
BcoDI	GTCTC	2 cut(s)	24, 171
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	2 cut(s)	172, 598
BfoI	RGCGCY	1 cut(s)	615
BglII	AGATCT	1 cut(s)	570
BisI	GCNGC	2 cut(s)	9, 429
BlsI	GCNGC	2 cut(s)	10, 430
Bme1390I	CCNGG	4 cut(s)	90, 294, 344, 372
Bme18I	GGWCC	2 cut(s)	230, 417
BmeT110I	CYCGRG	1 cut(s)	620
BmgBI	CACGTC	1 cut(s)	355
BmgT120I	GGNCC	2 cut(s)	230, 417
BmiI	GGNNCC	4 cut(s)	41, 256, 418, 549
BmrFI	CCNGG	4 cut(s)	90, 294, 344, 372
BmsI	GCATC	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	2 cut(s)	294, 372
BsaAI	YACGTR	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	35
BsaWI	WCCGGW	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse118I	RCCGGY	1 cut(s)	410
Bse21I	CCTNAGG	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	90, 344
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	2 cut(s)	482, 537
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	486
BseXI	GCAGC	2 cut(s)	20, 440
BsgI	GTGCAG	1 cut(s)	532
Bsh1236I	CGCG	1 cut(s)	555
BshFI	GGCC	2 cut(s)	59, 632
BshNI	GGYRCC	1 cut(s)	254
BshTI	ACCGGT	1 cut(s)	410
BsiHKCI	CYCGRG	1 cut(s)	620
BsiSI	CCGG	4 cut(s)	201, 293, 372, 411
BslFI	GGGAC	3 cut(s)	251, 430, 519
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	24, 171
BsmFI	GGGAC	3 cut(s)	251, 430, 519
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	2 cut(s)	59, 632
Bso31I	GGTCTC	1 cut(s)	24
BsoBI	CYCGRG	1 cut(s)	620
Bsp143I	GATC	4 cut(s)	127, 166, 397, 570
BspACI	CCGC	1 cut(s)	474
BspANI	GGCC	2 cut(s)	59, 632
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	1 cut(s)	555
BspLI	GGNNCC	4 cut(s)	41, 256, 418, 549
BspMAI	CTGCAG	1 cut(s)	602
BspT107I	GGYRCC	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	410
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	4 cut(s)	127, 166, 397, 570
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	90, 344
Bst4CI	ACNGT	1 cut(s)	510
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	515
BstDEI	CTNAG	1 cut(s)	495
BstF5I	GGATG	2 cut(s)	482, 537
BstFNI	CGCG	1 cut(s)	555
BstH2I	RGCGCY	1 cut(s)	615
BstHHI	GCGC	1 cut(s)	614
BstKTI	GATC	4 cut(s)	130, 169, 400, 573
BstMAI	GTCTC	2 cut(s)	24, 171
BstMBI	GATC	4 cut(s)	127, 166, 397, 570
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	90, 344
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	4 cut(s)	88, 292, 342, 370
BstSFI	CTRYAG	2 cut(s)	172, 598
BstSNI	TACGTA	1 cut(s)	275
BstUI	CGCG	1 cut(s)	555
BstV1I	GCAGC	2 cut(s)	20, 440
BstX2I	RGATCY	1 cut(s)	570
BstYI	RGATCY	1 cut(s)	570
Bsu36I	CCTNAGG	1 cut(s)	495
BsuRI	GGCC	2 cut(s)	59, 632
BtrI	CACGTC	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	482, 537
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	1 cut(s)	515
CfoI	GCGC	1 cut(s)	614
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	2 cut(s)	230, 417
Csp6I	GTAC	1 cut(s)	328
CspAI	ACCGGT	1 cut(s)	410
CviAII	CATG	3 cut(s)	146, 181, 223
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	4 cut(s)	129, 168, 399, 572
DpnII	GATC	4 cut(s)	127, 166, 397, 570
EaeI	YGGCCR	1 cut(s)	630
Eco105I	TACGTA	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	24
Eco47I	GGWCC	2 cut(s)	230, 417
Eco57I	CTGAAG	1 cut(s)	480
Eco81I	CCTNAGG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	417
EcoRII	CCWGG	2 cut(s)	88, 342
EcoT14I	CCWWGG	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	3 cut(s)	149, 184, 226
FaiI	YATR	6 cut(s)	50, 110, 147, 182, 224, 318
FaqI	GGGAC	3 cut(s)	251, 430, 519
FatI	CATG	3 cut(s)	145, 180, 222
FbaI	TGATCA	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	9, 429
FokI	GGATG	2 cut(s)	489, 524
Fsp4HI	GCNGC	2 cut(s)	9, 429
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	613
GluI	GCNGC	2 cut(s)	9, 429
HaeII	RGCGCY	1 cut(s)	615
HaeIII	GGCC	2 cut(s)	59, 632
HapII	CCGG	4 cut(s)	201, 293, 372, 411
HhaI	GCGC	1 cut(s)	614
Hin1II	CATG	3 cut(s)	149, 184, 226
Hin6I	GCGC	1 cut(s)	612
HinP1I	GCGC	1 cut(s)	612
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HpaII	CCGG	4 cut(s)	201, 293, 372, 411
Hpy166II	GTNNAC	2 cut(s)	154, 278
Hpy188I	TCNGA	2 cut(s)	55, 310
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	2 cut(s)	154, 278
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	2 cut(s)	148, 243
HpyCH4III	ACNGT	1 cut(s)	510
HpyCH4IV	ACGT	4 cut(s)	274, 354, 379, 448
HpyCH4V	TGCA	5 cut(s)	8, 352, 383, 513, 600
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	495
HpySE526I	ACGT	4 cut(s)	274, 354, 379, 448
Hsp92II	CATG	3 cut(s)	149, 184, 226
HspAI	GCGC	1 cut(s)	612
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	4 cut(s)	127, 166, 397, 570
LmnI	GCTCC	2 cut(s)	45, 547
Lsp1109I	GCAGC	2 cut(s)	20, 440
LweI	GCATC	1 cut(s)	467
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	4 cut(s)	274, 354, 379, 448
MalI	GATC	4 cut(s)	129, 168, 399, 572
MboI	GATC	4 cut(s)	127, 166, 397, 570
MfeI	CAATTG	2 cut(s)	237, 249
MflI	RGATCY	1 cut(s)	570
MluCI	AATT	4 cut(s)	237, 249, 303, 390
MnlI	CCTC	4 cut(s)	49, 84, 209, 490
MseI	TTAA	2 cut(s)	501, 519
MslI	CAYNNNNRTG	2 cut(s)	357, 542
MspI	CCGG	4 cut(s)	201, 293, 372, 411
MspR9I	CCNGG	4 cut(s)	90, 294, 344, 372
MunI	CAATTG	2 cut(s)	237, 249
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	2 cut(s)	90, 344
MvnI	CGCG	1 cut(s)	555
MwoI	GCNNNNNNNGC	1 cut(s)	254
NciI	CCSGG	2 cut(s)	294, 372
NdeII	GATC	4 cut(s)	127, 166, 397, 570
NlaIII	CATG	3 cut(s)	149, 184, 226
NlaIV	GGNNCC	4 cut(s)	41, 256, 418, 549
NspI	RCATGY	1 cut(s)	149
OliI	CACNNNNGTG	1 cut(s)	357
PaeR7I	CTCGAG	1 cut(s)	620
PctI	GAATGC	1 cut(s)	476
PflFI	GACNNNGTC	1 cut(s)	421
PinAI	ACCGGT	1 cut(s)	410
PkrI	GCNGC	2 cut(s)	10, 430
Ppu21I	YACGTR	1 cut(s)	275
PpuMI	RGGWCCY	1 cut(s)	417
Psp5II	RGGWCCY	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	88, 342
PspGI	CCWGG	2 cut(s)	88, 342
PspN4I	GGNNCC	4 cut(s)	41, 256, 418, 549
PspPI	GGNCC	2 cut(s)	230, 417
PspPPI	RGGWCCY	1 cut(s)	417
PspXI	VCTCGAGB	1 cut(s)	620
PstI	CTGCAG	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	570
PsyI	GACNNNGTC	1 cut(s)	421
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	2 cut(s)	357, 542
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	501, 519
SatI	GCNGC	2 cut(s)	9, 429
Sau3AI	GATC	4 cut(s)	127, 166, 397, 570
Sau96I	GGNCC	2 cut(s)	230, 417
ScrFI	CCNGG	4 cut(s)	90, 294, 344, 372
SfaNI	GCATC	1 cut(s)	467
SfcI	CTRYAG	2 cut(s)	172, 598
Sfr274I	CTCGAG	1 cut(s)	620
SinI	GGWCC	2 cut(s)	230, 417
SlaI	CTCGAG	1 cut(s)	620
SmiMI	CAYNNNNRTG	2 cut(s)	357, 542
SmlI	CTYRAG	2 cut(s)	323, 620
SmoI	CTYRAG	2 cut(s)	323, 620
SnaBI	TACGTA	1 cut(s)	275
Sse9I	AATT	4 cut(s)	237, 249, 303, 390
SsiI	CCGC	1 cut(s)	474
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	4 cut(s)	88, 292, 342, 370
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	510
TaiI	ACGT	4 cut(s)	277, 357, 382, 451
TaqI	TCGA	3 cut(s)	153, 578, 621
TasI	AATT	4 cut(s)	237, 249, 303, 390
Tru1I	TTAA	2 cut(s)	501, 519
Tru9I	TTAA	2 cut(s)	501, 519
TscAI	CASTG	1 cut(s)	515
TseI	GCWGC	2 cut(s)	8, 428
TspDTI	ATGAA	1 cut(s)	211
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	1 cut(s)	515
Tth111I	GACNNNGTC	1 cut(s)	421
VpaK11BI	GGWCC	2 cut(s)	230, 417
XceI	RCATGY	1 cut(s)	149
XhoI	CTCGAG	1 cut(s)	620
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.