Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006073

Physical Location & Seq

Genomic Coordinates Forward (+)

7723038 .. 7726512

Gene Structure 3475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g11410.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTTTGCAGCAGAAAATGGACTGAAAGGAGACCCAAGGCTCCAAGCCATATCAGAAGCCATCAGGGTTGTGCCTCACTTTCCGAAACCAGGGATAATGTTTCAAGACATAACAACATTGTTGCTTGATCACAAGGCCTTCAAGCATGTTGTCGACATTTTTGTTGATCGCTACAGAGACATGGACATCTCTGTTGTCGCCGGAGTGGAAGCCAGAGGGTTCATGTTTGGTCCTTCAGTTGCTTTAGCAATTGGTGCCAAGTTCGTCCCTCTACGTAAACCTAGAAAGTTGCCGGGAGAAGTAATTTCAGAAGCGTATGAGCTCGAGTATGGAACCGACTGCCTGGAAATGCATGTTGGTGCTGCTCAGCCCGGTGAACGTGCATTGGTAATTGATGATCTAATAGCTACCGGTGGGACCTTATCAGCAGCAATAAGACTTCTTGAACGTGTTGGGGCTGAAGTGGTCGAATGTGGATGCGTTATTGGGTTGCCTGAGGTTAAGGGACAGTGCAGGCTTAATGGAAAGCCACTCTACATCCTTGTGGAGCCACGCGAGTTAGATAACTGCTTTCTGTTGGAGTTGTGCTTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0006139 GO:0006144 GO:0006168 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0008150 GO:0008152 GO:0008509 GO:0009058 GO:0009112 GO:0009113 GO:0009987 GO:0012505 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0022857 GO:0034220 GO:0034641 GO:0034654 GO:0035435 GO:0042440 GO:0043094 GO:0043096 GO:0043101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046083 GO:0046084 GO:0046112 GO:0046148 GO:0046483 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0098656 GO:0098660 GO:0098661 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

199

Amino Acids

21.57

Weight (kDa)

5.28

Isoelectric Point (pI)

16.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80050 AT1G80050 AT5G11160 AT5G11160
fragaria_vesca	FvH4_2g28940 FvH4_2g28940 FvH4_2g28940
malus_domestica	MD08G1155300.v1.1 MD15G1126400.v1.1
prunus_persica	Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1
pyrus_communis	pycom08g12780 pycom15g11410
rosa_chinensis	RchiOBHm_Chr6g0297761
rosa_laevigata	RLG00000011564
rosa_multiflora	Rmu_sc0002674.1_g000009
rosa_roxburghii	Rroxscaffold_7G00170220 Rroxscaffold_7G00179070
rosa_rugosa	Rorug06G0275400
rosa_samantha	Rh6AG385800 Rh6BG394400 Rh6CG400100 Rh6DG386600
rosa_wichuraiana	Rw6G033630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	555
AcuI	CTGAAG	2 cut(s)	219, 480
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	448
AgeI	ACCGGT	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	104, 142, 446
AjnI	CCWGG	2 cut(s)	88, 342
AjuI	GAANNNNNNNTTGG	2 cut(s)	339, 371
AluBI	AGCT	2 cut(s)	322, 407
AluI	AGCT	2 cut(s)	322, 407
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	2 cut(s)	24, 171
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	3 cut(s)	8, 362, 428
AsiGI	ACCGGT	1 cut(s)	410
AspS9I	GGNCC	2 cut(s)	230, 417
AsuC2I	CCSGG	2 cut(s)	294, 372
AsuHPI	GGTGA	1 cut(s)	386
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	2 cut(s)	230, 417
AxyI	CCTNAGG	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	3 cut(s)	20, 349, 440
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	2 cut(s)	90, 344
BclI	TGATCA	1 cut(s)	127
BcnI	CCSGG	2 cut(s)	294, 372
BcoDI	GTCTC	2 cut(s)	24, 171
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	172
BisI	GCNGC	3 cut(s)	9, 363, 429
BlpI	GCTNAGC	1 cut(s)	366
BlsI	GCNGC	3 cut(s)	10, 364, 430
Bme1390I	CCNGG	4 cut(s)	90, 294, 344, 372
Bme18I	GGWCC	2 cut(s)	230, 417
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	2 cut(s)	230, 417
BmiI	GGNNCC	5 cut(s)	41, 256, 334, 418, 549
BmrFI	CCNGG	4 cut(s)	90, 294, 344, 372
BmsI	GCATC	1 cut(s)	467
Bpu1102I	GCTNAGC	1 cut(s)	366
BpuMI	CCSGG	2 cut(s)	294, 372
BsaAI	YACGTR	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	35, 89
BsaWI	WCCGGW	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse118I	RCCGGY	1 cut(s)	410
Bse21I	CCTNAGG	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	90, 344
BseDI	CCNNGG	2 cut(s)	35, 89
BseGI	GGATG	2 cut(s)	482, 537
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	2 cut(s)	380, 486
BseXI	GCAGC	3 cut(s)	20, 349, 440
BsgI	GTGCAG	1 cut(s)	532
Bsh1236I	CGCG	1 cut(s)	555
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	254
BshTI	ACCGGT	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	4 cut(s)	201, 293, 372, 411
BslFI	GGGAC	3 cut(s)	251, 430, 519
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	24, 171
BsmFI	GGGAC	3 cut(s)	251, 430, 519
BsnI	GGCC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	24
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	3 cut(s)	127, 166, 397
Bsp1720I	GCTNAGC	1 cut(s)	366
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	2 cut(s)	379, 487
BspFNI	CGCG	1 cut(s)	555
BspLI	GGNNCC	5 cut(s)	41, 256, 334, 418, 549
BspT107I	GGYRCC	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	410
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	2 cut(s)	35, 89
BssMI	GATC	3 cut(s)	127, 166, 397
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	90, 344
Bst4CI	ACNGT	1 cut(s)	510
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	515
BstDEI	CTNAG	2 cut(s)	366, 495
BstF5I	GGATG	2 cut(s)	482, 537
BstFNI	CGCG	1 cut(s)	555
BstKTI	GATC	3 cut(s)	130, 169, 400
BstMAI	GTCTC	2 cut(s)	24, 171
BstMBI	GATC	3 cut(s)	127, 166, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	90, 344
BstNSI	RCATGY	2 cut(s)	149, 356
BstSCI	CCNGG	4 cut(s)	88, 292, 342, 370
BstSFI	CTRYAG	1 cut(s)	172
BstSNI	TACGTA	1 cut(s)	275
BstUI	CGCG	1 cut(s)	555
BstV1I	GCAGC	3 cut(s)	20, 349, 440
Bsu36I	CCTNAGG	1 cut(s)	495
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	2 cut(s)	482, 537
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	1 cut(s)	515
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	2 cut(s)	230, 417
CspAI	ACCGGT	1 cut(s)	410
CviAII	CATG	4 cut(s)	146, 181, 223, 353
DdeI	CTNAG	2 cut(s)	366, 495
DpnI	GATC	3 cut(s)	129, 168, 399
DpnII	GATC	3 cut(s)	127, 166, 397
Ecl136II	GAGCTC	1 cut(s)	322
Eco105I	TACGTA	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	35
Eco147I	AGGCCT	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	24
Eco47I	GGWCC	2 cut(s)	230, 417
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	2 cut(s)	219, 480
Eco81I	CCTNAGG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	417
EcoRII	CCWGG	2 cut(s)	88, 342
EcoT14I	CCWWGG	1 cut(s)	35
EcoT22I	ATGCAT	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	4 cut(s)	149, 184, 226, 356
FaiI	YATR	8 cut(s)	50, 110, 147, 182, 224, 318, 330, 354
FaqI	GGGAC	3 cut(s)	251, 430, 519
FatI	CATG	4 cut(s)	145, 180, 222, 352
FbaI	TGATCA	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	9, 363, 429
FokI	GGATG	2 cut(s)	489, 524
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	3 cut(s)	9, 363, 429
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	3 cut(s)	9, 363, 429
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	4 cut(s)	201, 293, 372, 411
Hin1II	CATG	4 cut(s)	149, 184, 226, 356
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HpaII	CCGG	4 cut(s)	201, 293, 372, 411
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	3 cut(s)	154, 278, 377
Hpy188I	TCNGA	3 cut(s)	55, 84, 310
Hpy188III	TCNNGA	2 cut(s)	104, 443
Hpy8I	GTNNAC	3 cut(s)	154, 278, 377
HpyAV	CCTTC	2 cut(s)	148, 243
HpyCH4III	ACNGT	1 cut(s)	510
HpyCH4IV	ACGT	3 cut(s)	274, 379, 448
HpyCH4V	TGCA	4 cut(s)	8, 352, 383, 513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	366, 495
HpySE526I	ACGT	3 cut(s)	274, 379, 448
Hsp92II	CATG	4 cut(s)	149, 184, 226, 356
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	127, 166, 397
LmnI	GCTCC	2 cut(s)	45, 547
Lsp1109I	GCAGC	3 cut(s)	20, 349, 440
LweI	GCATC	1 cut(s)	467
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	3 cut(s)	274, 379, 448
MalI	GATC	3 cut(s)	129, 168, 399
MboI	GATC	3 cut(s)	127, 166, 397
MfeI	CAATTG	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	3 cut(s)	249, 303, 390
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	4 cut(s)	84, 209, 279, 490
Mph1103I	ATGCAT	1 cut(s)	354
MseI	TTAA	2 cut(s)	501, 519
MslI	CAYNNNNRTG	2 cut(s)	357, 542
MspI	CCGG	4 cut(s)	201, 293, 372, 411
MspR9I	CCNGG	4 cut(s)	90, 294, 344, 372
MunI	CAATTG	1 cut(s)	249
MvaI	CCWGG	2 cut(s)	90, 344
MvnI	CGCG	1 cut(s)	555
MwoI	GCNNNNNNNGC	1 cut(s)	254
NciI	CCSGG	2 cut(s)	294, 372
NdeII	GATC	3 cut(s)	127, 166, 397
NlaIII	CATG	4 cut(s)	149, 184, 226, 356
NlaIV	GGNNCC	5 cut(s)	41, 256, 334, 418, 549
NsiI	ATGCAT	1 cut(s)	354
NspI	RCATGY	2 cut(s)	149, 356
PaeR7I	CTCGAG	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	137
PinAI	ACCGGT	1 cut(s)	410
PkrI	GCNGC	3 cut(s)	10, 364, 430
Ppu21I	YACGTR	1 cut(s)	275
PpuMI	RGGWCCY	1 cut(s)	417
Psp124BI	GAGCTC	1 cut(s)	324
Psp5II	RGGWCCY	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	88, 342
PspGI	CCWGG	2 cut(s)	88, 342
PspN4I	GGNNCC	5 cut(s)	41, 256, 334, 418, 549
PspPI	GGNCC	2 cut(s)	230, 417
PspPPI	RGGWCCY	1 cut(s)	417
PspXI	VCTCGAGB	1 cut(s)	323
RseI	CAYNNNNRTG	2 cut(s)	357, 542
SacI	GAGCTC	1 cut(s)	324
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	501, 519
SatI	GCNGC	3 cut(s)	9, 363, 429
Sau3AI	GATC	3 cut(s)	127, 166, 397
Sau96I	GGNCC	2 cut(s)	230, 417
ScrFI	CCNGG	4 cut(s)	90, 294, 344, 372
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	8 cut(s)	277, 283, 324, 382, 409, 422, 451, 501
SfaNI	GCATC	1 cut(s)	467
SfcI	CTRYAG	1 cut(s)	172
Sfr274I	CTCGAG	1 cut(s)	323
SinI	GGWCC	2 cut(s)	230, 417
SlaI	CTCGAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	2 cut(s)	357, 542
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SnaBI	TACGTA	1 cut(s)	275
Sse9I	AATT	3 cut(s)	249, 303, 390
SseBI	AGGCCT	1 cut(s)	137
SspMI	CTAG	1 cut(s)	282
SstI	GAGCTC	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	4 cut(s)	88, 292, 342, 370
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	510
TaiI	ACGT	3 cut(s)	277, 382, 451
TaqI	TCGA	3 cut(s)	153, 324, 468
TasI	AATT	3 cut(s)	249, 303, 390
Tru1I	TTAA	2 cut(s)	501, 519
Tru9I	TTAA	2 cut(s)	501, 519
TscAI	CASTG	1 cut(s)	515
TseI	GCWGC	3 cut(s)	8, 362, 428
TspDTI	ATGAA	1 cut(s)	211
TspRI	CASTG	1 cut(s)	515
VpaK11BI	GGWCC	2 cut(s)	230, 417
XceI	RCATGY	2 cut(s)	149, 356
XhoI	CTCGAG	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	282
Zsp2I	ATGCAT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.