Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006073

Physical Location & Seq

Genomic Coordinates Reverse (-)

62304664 .. 62308017

Gene Structure 3354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG394400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTTTGCTTCAGAAAATGGACTGAAAGGAGACCCAAGGCTTCAGGCCATATCTGAAGCCATCAGGGTTGTGCCTCACTTTCCAAAACCAGGAATAATGTTTCAGGACATTACAACATTGTTGCTTGATCACAAGGCCTTCAAACACACTGTCGACATTTTTGTTGATCGCTACAGAGACATGGACATCTCTGTTGTTGCCGGAGTGGAAGCCAGAGGGTTCATGTTTGGTCCTGCAATTGCCTTAGCTATTGGTGCCAAGTTTGTTCCTTTACGTAAACCCAGAAAGTTGCCGGGAGAAGTAATTTCAGAAGCATACGAACTCGAATATGGAACTGATTGCTTGGAGATGCATGTTGGTGCTGTTCAGCCTGGAGAACGTGCATTGGTTATTGATGATTTAATAGCTACAGGTGGGACATTGTCGGCAGCAATAAGCCTTTTAGAGCGCGTGGGAGCTGAAGTGGTCGAATGTGCATGTGTTATTGGGTTGCCTGAGGTTAAGGTAATGTTTGAACCTTTTATGAACTTATTGGCTGGTGAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0006139 GO:0006144 GO:0006168 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0008150 GO:0008152 GO:0008509 GO:0009058 GO:0009112 GO:0009113 GO:0009987 GO:0012505 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0022857 GO:0034220 GO:0034641 GO:0034654 GO:0035435 GO:0042440 GO:0043094 GO:0043096 GO:0043101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046083 GO:0046084 GO:0046112 GO:0046148 GO:0046483 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0098656 GO:0098660 GO:0098661 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

182

Amino Acids

19.75

Weight (kDa)

4.99

Isoelectric Point (pI)

21.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran	PF00156	48 - 163	6.5e-16	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80050 AT1G80050 AT5G11160 AT5G11160
fragaria_vesca	FvH4_2g28940 FvH4_2g28940 FvH4_2g28940
malus_domestica	MD08G1155300.v1.1 MD15G1126400.v1.1
prunus_persica	Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1 Prupe.1G482300_v2.0.a1
pyrus_communis	pycom08g12780 pycom15g11410
rosa_chinensis	RchiOBHm_Chr6g0297761
rosa_laevigata	RLG00000011564
rosa_multiflora	Rmu_sc0002674.1_g000009
rosa_roxburghii	Rroxscaffold_7G00170220 Rroxscaffold_7G00179070
rosa_rugosa	Rorug06G0275400
rosa_samantha	Rh6AG385800 Rh6BG394400 Rh6CG400100 Rh6DG386600
rosa_wichuraiana	Rw6G033630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	450
AcuI	CTGAAG	3 cut(s)	26, 75, 480
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	142, 515
AjnI	CCWGG	2 cut(s)	88, 370
AluBI	AGCT	3 cut(s)	248, 407, 458
AluI	AGCT	3 cut(s)	248, 407, 458
Alw26I	GTCTC	2 cut(s)	24, 171
AoxI	GGCC	2 cut(s)	45, 135
ApeKI	GCWGC	1 cut(s)	428
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
AspLEI	GCGC	1 cut(s)	450
AspS9I	GGNCC	1 cut(s)	230
AsuC2I	CCSGG	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	230
AxyI	CCTNAGG	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	2 cut(s)	90, 372
BclI	TGATCA	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	24, 171
BfmI	CTRYAG	2 cut(s)	172, 408
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	3 cut(s)	90, 294, 372
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	3 cut(s)	90, 294, 372
BmsI	GCATC	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	294
BsaAI	YACGTR	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse21I	CCTNAGG	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	90, 372
BseDI	CCNNGG	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	486
BseXI	GCAGC	1 cut(s)	440
Bsh1236I	CGCG	1 cut(s)	450
BshFI	GGCC	2 cut(s)	47, 137
BshNI	GGYRCC	1 cut(s)	254
BsiSI	CCGG	2 cut(s)	201, 293
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	24, 171
BsmFI	GGGAC	1 cut(s)	430
BsnI	GGCC	2 cut(s)	47, 137
Bso31I	GGTCTC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	127, 166
BspANI	GGCC	2 cut(s)	47, 137
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	2 cut(s)	127, 166
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	90, 372
Bst4CI	ACNGT	2 cut(s)	151, 546
BstBAI	YACGTR	1 cut(s)	275
BstDEI	CTNAG	2 cut(s)	244, 495
BstFNI	CGCG	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	2 cut(s)	130, 169
BstMAI	GTCTC	2 cut(s)	24, 171
BstMBI	GATC	2 cut(s)	127, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	90, 372
BstNSI	RCATGY	2 cut(s)	356, 480
BstSCI	CCNGG	3 cut(s)	88, 292, 370
BstSFI	CTRYAG	2 cut(s)	172, 408
BstSNI	TACGTA	1 cut(s)	275
BstUI	CGCG	1 cut(s)	450
BstV1I	GCAGC	1 cut(s)	440
Bsu36I	CCTNAGG	1 cut(s)	495
BsuRI	GGCC	2 cut(s)	47, 137
BtsIMutI	CAGTG	1 cut(s)	147
CfoI	GCGC	1 cut(s)	450
Cfr13I	GGNCC	1 cut(s)	230
CviAII	CATG	4 cut(s)	181, 223, 353, 477
DdeI	CTNAG	2 cut(s)	244, 495
DpnI	GATC	2 cut(s)	129, 168
DpnII	GATC	2 cut(s)	127, 166
Eco105I	TACGTA	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	35
Eco147I	AGGCCT	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	3 cut(s)	26, 75, 480
Eco81I	CCTNAGG	1 cut(s)	495
EcoRII	CCWGG	2 cut(s)	88, 370
EcoT14I	CCWWGG	1 cut(s)	35
EcoT22I	ATGCAT	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	4 cut(s)	184, 226, 356, 480
FaiI	YATR	8 cut(s)	50, 182, 224, 316, 330, 354, 478, 524
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	4 cut(s)	180, 222, 352, 476
FbaI	TGATCA	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	429
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	47, 137
HapII	CCGG	2 cut(s)	201, 293
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	4 cut(s)	184, 226, 356, 480
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HpaII	CCGG	2 cut(s)	201, 293
Hpy166II	GTNNAC	3 cut(s)	154, 278, 542
Hpy188I	TCNGA	3 cut(s)	13, 55, 310
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	3 cut(s)	154, 278, 542
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	2 cut(s)	151, 546
HpyCH4IV	ACGT	2 cut(s)	274, 379
HpyCH4V	TGCA	4 cut(s)	236, 352, 383, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	244, 495
HpySE526I	ACGT	2 cut(s)	274, 379
Hsp92II	CATG	4 cut(s)	184, 226, 356, 480
HspAI	GCGC	1 cut(s)	448
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	127, 166
LmnI	GCTCC	1 cut(s)	455
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	1 cut(s)	339
MaeII	ACGT	2 cut(s)	274, 379
MalI	GATC	2 cut(s)	129, 168
MboI	GATC	2 cut(s)	127, 166
MfeI	CAATTG	1 cut(s)	237
MluCI	AATT	2 cut(s)	237, 303
MnlI	CCTC	3 cut(s)	84, 209, 490
Mph1103I	ATGCAT	1 cut(s)	354
MseI	TTAA	2 cut(s)	401, 501
MslI	CAYNNNNRTG	1 cut(s)	357
MspI	CCGG	2 cut(s)	201, 293
MspR9I	CCNGG	3 cut(s)	90, 294, 372
MunI	CAATTG	1 cut(s)	237
MvaI	CCWGG	2 cut(s)	90, 372
MvnI	CGCG	1 cut(s)	450
MwoI	GCNNNNNNNGC	1 cut(s)	254
NciI	CCSGG	1 cut(s)	294
NdeII	GATC	2 cut(s)	127, 166
NlaIII	CATG	4 cut(s)	184, 226, 356, 480
NlaIV	GGNNCC	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	354
NspI	RCATGY	2 cut(s)	356, 480
PceI	AGGCCT	1 cut(s)	137
PflFI	GACNNNGTC	1 cut(s)	421
PkrI	GCNGC	1 cut(s)	430
Ppu21I	YACGTR	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	88, 370
PspGI	CCWGG	2 cut(s)	88, 370
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	230
PsyI	GACNNNGTC	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	357
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	401, 501
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	2 cut(s)	127, 166
Sau96I	GGNCC	1 cut(s)	230
ScrFI	CCNGG	3 cut(s)	90, 294, 372
SetI	ASST	9 cut(s)	250, 277, 382, 409, 415, 460, 501, 507, 520
SfaNI	GCATC	1 cut(s)	339
SfcI	CTRYAG	2 cut(s)	172, 408
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	357
SnaBI	TACGTA	1 cut(s)	275
Sse9I	AATT	2 cut(s)	237, 303
SseBI	AGGCCT	1 cut(s)	137
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	3 cut(s)	88, 292, 370
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	151, 546
TaiI	ACGT	2 cut(s)	277, 382
TaqI	TCGA	3 cut(s)	153, 324, 468
TasI	AATT	2 cut(s)	237, 303
Tru1I	TTAA	2 cut(s)	401, 501
Tru9I	TTAA	2 cut(s)	401, 501
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	2 cut(s)	211, 539
TspRI	CASTG	1 cut(s)	154
Tth111I	GACNNNGTC	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	230
XceI	RCATGY	2 cut(s)	356, 480
XmiI	GTMKAC	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.