Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015466

Physical Location & Seq

Genomic Coordinates Forward (+)

3619152 .. 3621511

Gene Structure 2360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGAGCTGGGAGAGAAGTCAGCGTATCGCTAGATGGAGTCAGAGACAAAAACTTGATGCAGCTTAAGATACTCAACACGGTTTTGTTCCCGGTTCGTTACAACGACAAGTACTACGCCGATGCAATCGCTGCCGGCGAATTCACCAAGCTTGCATATTACAATGACATATGTGTTGGAGCTATCGCCTGTCGGCTGGAGAAGAAAGAAAGTGGGGCCATGCGAGTTTATATAATGACGCTTGGTGTTCTTGCACCCTACCGTGGGATTGGCATTGGCTCAAATCTATTGAATCATGTTCTTGACATGTGCTCCAAGCAAAACATGTGTGAGATATACTTGCATGTGCAGACAAACAACGAAGACGCAATCAAGTTCTACAAGAAGTTCGGCTTTGAGATCACAGATACCATACAAAACTATTACATCAACATTGAGCCAAGAGATTGCTACGTTGTCAGCAAGTCCTTTGCTCAATCTGAAGCCAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022402 GO:0031365 GO:0034085 GO:0034087 GO:0034212 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051276 GO:0051604 GO:0052858 GO:0061733 GO:0070601 GO:0071704 GO:0071840 GO:0071962 GO:0098813 GO:0140014 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

164

Amino Acids

18.55

Weight (kDa)

7.57

Isoelectric Point (pI)

26.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	33 - 132	2.4e-18	Acetyltransferase (GNAT) family
Acetyltransf_10	PF13673	37 - 137	7.8e-12	Acetyltransferase (GNAT) domain
Acetyltransf_4	PF13420	44 - 142	1.8e-07	Acetyltransferase (GNAT) domain
Acetyltransf_7	PF13508	52 - 133	2e-12	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11340
fragaria_vesca	FvH4_2g29780
malus_domestica	MD15G1118400.v1.1
prunus_persica	Prupe.1G471800_v2.0.a1 Prupe.1G471800_v2.0.a1
pyrus_communis	pycom15g10660
rosa_chinensis	RchiOBHm_Chr6g0298801
rosa_laevigata	RLG00000011484
rosa_multiflora	Rmu_sc0033401.1_g000001 Rmu_ssc0000397.1_g000017
rosa_roxburghii	Rroxscaffold_7G00169320
rosa_rugosa	Rorug06G0283000
rosa_samantha	Rh6BG402400 Rh6CG408200 Rh6DG395000
rosa_wichuraiana	Rw6G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	140
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	263, 264
AflII	CTTAAG	1 cut(s)	65
AflIII	ACRYGT	2 cut(s)	306, 324
AgsI	TTSAA	1 cut(s)	292
AluBI	AGCT	4 cut(s)	8, 64, 151, 182
AluI	AGCT	4 cut(s)	8, 64, 151, 182
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	39
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	2 cut(s)	61, 131
ApoI	RAATTY	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	216
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	2 cut(s)	73, 118
BccI	CCATC	1 cut(s)	29
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	32
BfrI	CTTAAG	1 cut(s)	65
BisI	GCNGC	2 cut(s)	62, 132
BlsI	GCNGC	2 cut(s)	63, 133
BmcAI	AGTACT	1 cut(s)	113
Bme1390I	CCNGG	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	216
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	48, 112
BpiI	GAAGAC	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	262
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 264
Bse118I	RCCGGY	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	262
BseLI	CCNNNNNNNGG	2 cut(s)	263, 264
BseXI	GCAGC	2 cut(s)	73, 118
BseYI	CCCAGC	1 cut(s)	8
BsgI	GTGCAG	1 cut(s)	368
BshFI	GGCC	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	314
BsiSI	CCGG	2 cut(s)	92, 135
BslI	CCNNNNNNNGG	2 cut(s)	263, 264
BsmAI	GTCTC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	1 cut(s)	399
BspANI	GGCC	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	217
BspTI	CTTAAG	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	1 cut(s)	399
Bst4CI	ACNGT	2 cut(s)	82, 263
BstAFI	CTTAAG	1 cut(s)	65
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	136, 153
BstDSI	CCRYGG	1 cut(s)	262
BstKTI	GATC	1 cut(s)	402
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	399
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNSI	RCATGY	3 cut(s)	310, 328, 347
BstSCI	CCNGG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	73, 118
BstV2I	GAAGAC	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	218
BtgI	CCRYGG	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	136, 153
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	216
CseI	GACGC	2 cut(s)	247, 374
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	5 cut(s)	220, 296, 307, 325, 344
CviQI	GTAC	1 cut(s)	112
DpnI	GATC	1 cut(s)	401
DpnII	GATC	1 cut(s)	399
EcoRI	GAATTC	1 cut(s)	140
FaeI	CATG	5 cut(s)	223, 299, 310, 328, 347
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FatI	CATG	5 cut(s)	219, 295, 306, 324, 343
FauNDI	CATATG	1 cut(s)	170
Fnu4HI	GCNGC	2 cut(s)	62, 132
Fsp4HI	GCNGC	2 cut(s)	62, 132
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	2 cut(s)	62, 132
GsaI	CCCAGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	2 cut(s)	92, 135
HgaI	GACGC	2 cut(s)	247, 374
Hin1II	CATG	5 cut(s)	223, 299, 310, 328, 347
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	2 cut(s)	39, 292
HpaII	CCGG	2 cut(s)	92, 135
HphI	GGTGA	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	44, 481
Hpy188III	TCNNGA	1 cut(s)	302
HpyCH4III	ACNGT	2 cut(s)	82, 263
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	6 cut(s)	61, 125, 155, 254, 343, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	5 cut(s)	223, 299, 310, 328, 347
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	399
LmnI	GCTCC	3 cut(s)	5, 179, 317
LpnPI	CCDG	4 cut(s)	105, 148, 182, 202
Lsp1109I	GCAGC	2 cut(s)	73, 118
LweI	GCATC	2 cut(s)	48, 112
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	401
MboI	GATC	1 cut(s)	399
MboII	GAAGA	2 cut(s)	214, 374
MhlI	GDGCHC	1 cut(s)	314
MluCI	AATT	1 cut(s)	140
MlyI	GAGTC	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	157
MroNI	GCCGGC	1 cut(s)	134
MseI	TTAA	1 cut(s)	66
MspCI	CTTAAG	1 cut(s)	65
MspI	CCGG	2 cut(s)	92, 135
MspR9I	CCNGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	131
NaeI	GCCGGC	1 cut(s)	136
NciI	CCSGG	1 cut(s)	92
NdeI	CATATG	1 cut(s)	170
NdeII	GATC	1 cut(s)	399
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	5 cut(s)	223, 299, 310, 328, 347
NlaIV	GGNNCC	1 cut(s)	217
NspI	RCATGY	3 cut(s)	310, 328, 347
PciI	ACATGT	2 cut(s)	306, 324
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdiI	GCCGGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	63, 133
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PscI	ACATGT	2 cut(s)	306, 324
PspFI	CCCAGC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	216
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	2 cut(s)	62, 132
Sau3AI	GATC	1 cut(s)	399
Sau96I	GGNCC	1 cut(s)	216
ScaI	AGTACT	1 cut(s)	113
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	314
SetI	ASST	5 cut(s)	10, 66, 153, 184, 456
SfaNI	GCATC	2 cut(s)	48, 112
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	140
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	82, 263
TaiI	ACGT	1 cut(s)	456
TasI	AATT	1 cut(s)	140
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseI	GCWGC	2 cut(s)	61, 131
Vha464I	CTTAAG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	140
XceI	RCATGY	3 cut(s)	310, 328, 347
XspI	CTAG	1 cut(s)	32
ZrmI	AGTACT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.