Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0015466

Physical Location & Seq

Genomic Coordinates Reverse (-)

58649128 .. 58652324

Gene Structure 3197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG395000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGGGCTGGGAAGCGCGAGATCCAAACCTCACTGGACGGACTGAGGGACAAGAACTTGATGCAGCTCAAGAAGCTCAACACCGCTCTCTTCCCGGTTCGCTACAACGACAGATACTACGCCGACGCCATCGCCGCCGGCGACTTCTCTAAACTAGCATATTACAGTGATATATGTGTTGGTTCAATTGCTTGCCGGCTTGAGAAGAAGGAAGGTGGGGTTGTCCGTGTGTACATCATGACACTGGGAGTTTTGGCACCATATCGTGGGATAGGCATTGGTAAAAAGCTGTTGAACCACGCTTTTGAACTCTGCGCCAAGCAAAACATTTCTGAAATTTACTTGCACGTTCAGACTAACAATGATGATGCCATAAGCTTCTATAAGAAATTTGGGTTTGAAATCACGGAAACTATCCAGAACTATTACACAAACATCACCCCTCCGGACTGCTACGTTCTTACCAAGTATATTACCCAACCTCAGACAAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022402 GO:0031365 GO:0034085 GO:0034087 GO:0034212 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051276 GO:0051604 GO:0052858 GO:0061733 GO:0070601 GO:0071704 GO:0071840 GO:0071962 GO:0098813 GO:0140014 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

165

Amino Acids

18.71

Weight (kDa)

9.06

Isoelectric Point (pI)

26.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	27 - 133	1.9e-18	Acetyltransferase (GNAT) family
Acetyltransf_10	PF13673	41 - 138	1.2e-10	Acetyltransferase (GNAT) domain
Acetyltransf_4	PF13420	53 - 143	2.7e-06	Acetyltransferase (GNAT) domain
Acetyltransf_7	PF13508	54 - 134	9e-13	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11340
fragaria_vesca	FvH4_2g29780
malus_domestica	MD15G1118400.v1.1
prunus_persica	Prupe.1G471800_v2.0.a1 Prupe.1G471800_v2.0.a1
pyrus_communis	pycom15g10660
rosa_chinensis	RchiOBHm_Chr6g0298801
rosa_laevigata	RLG00000011484
rosa_multiflora	Rmu_sc0033401.1_g000001 Rmu_ssc0000397.1_g000017
rosa_roxburghii	Rroxscaffold_7G00169320
rosa_rugosa	Rorug06G0283000
rosa_samantha	Rh6BG402400 Rh6CG408200 Rh6DG395000
rosa_wichuraiana	Rw6G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	256
AccB7I	CCANNNNNTGG	1 cut(s)	266
AccBSI	CCGCTC	1 cut(s)	86
AccII	CGCG	1 cut(s)	18
AccIII	TCCGGA	1 cut(s)	445
AciI	CCGC	2 cut(s)	84, 135
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	2 cut(s)	336, 389
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	4 cut(s)	186, 295, 308, 401
AluBI	AGCT	4 cut(s)	67, 76, 289, 378
AluI	AGCT	4 cut(s)	67, 76, 289, 378
AlwI	GGATC	1 cut(s)	16
Aor13HI	TCCGGA	1 cut(s)	445
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	2 cut(s)	336, 389
AspLEI	GCGC	2 cut(s)	18, 317
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	137
BcnI	CCSGG	1 cut(s)	95
BfaI	CTAG	1 cut(s)	155
BisI	GCNGC	2 cut(s)	65, 135
BlsI	GCNGC	2 cut(s)	66, 136
Bme1390I	CCNGG	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	95
BmrI	ACTGGG	1 cut(s)	254
BmsI	GCATC	2 cut(s)	51, 358
BmuI	ACTGGG	1 cut(s)	254
BpuEI	CTTGAG	2 cut(s)	53, 221
BpuMI	CCSGG	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse118I	RCCGGY	2 cut(s)	137, 195
Bse1I	ACTGG	2 cut(s)	39, 249
BseAI	TCCGGA	1 cut(s)	445
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	35, 497
BseNI	ACTGG	2 cut(s)	39, 249
BseXI	GCAGC	1 cut(s)	76
BseYI	CCCAGC	1 cut(s)	8
Bsh1236I	CGCG	1 cut(s)	18
BshNI	GGYRCC	1 cut(s)	256
BsiSI	CCGG	4 cut(s)	95, 138, 196, 446
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	62
Bsp13I	TCCGGA	1 cut(s)	445
Bsp1407I	TGTACA	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	21
BspACI	CCGC	2 cut(s)	84, 135
BspCNI	CTCAG	2 cut(s)	36, 496
BspEI	TCCGGA	1 cut(s)	445
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	256
BsrBI	CCGCTC	1 cut(s)	86
BsrFI	RCCGGY	2 cut(s)	137, 195
BsrGI	TGTACA	1 cut(s)	231
BsrI	ACTGG	2 cut(s)	39, 249
BssAI	RCCGGY	2 cut(s)	137, 195
BssMI	GATC	1 cut(s)	21
BssNI	GRCGYC	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	126
BstAUI	TGTACA	1 cut(s)	231
BstC8I	GCNNGC	3 cut(s)	139, 193, 197
BstDEI	CTNAG	2 cut(s)	44, 483
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	18, 317
BstKTI	GATC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 134
BstSCI	CCNGG	1 cut(s)	93
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	21
BtgZI	GCGATG	1 cut(s)	115
BtsIMutI	CAGTG	3 cut(s)	32, 172, 242
Cac8I	GCNNGC	3 cut(s)	139, 193, 197
CciI	TCATGA	1 cut(s)	237
CfoI	GCGC	2 cut(s)	18, 317
Cfr10I	RCCGGY	2 cut(s)	137, 195
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	6 cut(s)	8, 67, 76, 199, 289, 378
CviKI_1	RGCY	6 cut(s)	8, 67, 76, 199, 289, 378
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	2 cut(s)	44, 483
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
FaeI	CATG	1 cut(s)	241
FaiI	YATR	8 cut(s)	160, 173, 175, 239, 262, 374, 384, 471
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	65, 135
Fsp4HI	GCNGC	2 cut(s)	65, 135
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	2 cut(s)	17, 316
GluI	GCNGC	2 cut(s)	65, 135
GsaI	CCCAGC	1 cut(s)	12
HapII	CCGG	4 cut(s)	95, 138, 196, 446
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	2 cut(s)	18, 317
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	241
Hin6I	GCGC	2 cut(s)	16, 315
HinP1I	GCGC	2 cut(s)	16, 315
HindIII	AAGCTT	1 cut(s)	376
HpaII	CCGG	4 cut(s)	95, 138, 196, 446
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	334, 354, 486
Hpy188III	TCNNGA	4 cut(s)	70, 238, 418, 446
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	202, 206
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4IV	ACGT	2 cut(s)	348, 456
HpyCH4V	TGCA	2 cut(s)	64, 346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 134
HpyF3I	CTNAG	2 cut(s)	44, 483
HpySE526I	ACGT	2 cut(s)	348, 456
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	241
HspAI	GCGC	2 cut(s)	16, 315
Kpn2I	TCCGGA	1 cut(s)	445
KroI	GCCGGC	2 cut(s)	137, 195
KroNI	GCCGGC	2 cut(s)	139, 197
Kzo9I	GATC	1 cut(s)	21
LpnPI	CCDG	7 cut(s)	20, 108, 151, 209, 230, 431, 459
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	2 cut(s)	51, 358
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	2 cut(s)	348, 456
MalI	GATC	1 cut(s)	23
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	1 cut(s)	21
MboII	GAAGA	2 cut(s)	82, 217
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	1 cut(s)	21
MluCI	AATT	3 cut(s)	186, 336, 389
MnlI	CCTC	4 cut(s)	39, 40, 453, 492
MreI	CGCCGGCG	1 cut(s)	137
MroI	TCCGGA	1 cut(s)	445
MroNI	GCCGGC	2 cut(s)	137, 195
MspI	CCGG	4 cut(s)	95, 138, 196, 446
MspR9I	CCNGG	1 cut(s)	95
MunI	CAATTG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	73, 134
NaeI	GCCGGC	2 cut(s)	139, 197
NciI	CCSGG	1 cut(s)	95
NdeII	GATC	1 cut(s)	21
NgoMIV	GCCGGC	2 cut(s)	137, 195
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	1 cut(s)	258
PagI	TCATGA	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdiI	GCCGGC	2 cut(s)	139, 197
PflMI	CCANNNNNTGG	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	66, 136
PspFI	CCCAGC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	21
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SatI	GCNGC	2 cut(s)	65, 135
Sau3AI	GATC	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	95
SetI	ASST	9 cut(s)	32, 69, 78, 217, 291, 351, 380, 459, 484
SfaNI	GCATC	2 cut(s)	51, 358
SgrAI	CRCCGGYG	1 cut(s)	137
SmlI	CTYRAG	2 cut(s)	68, 200
SmoI	CTYRAG	2 cut(s)	68, 200
Sse9I	AATT	3 cut(s)	186, 336, 389
SsiI	CCGC	2 cut(s)	84, 135
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	167
TaiI	ACGT	2 cut(s)	351, 459
TasI	AATT	3 cut(s)	186, 336, 389
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	1 cut(s)	137
TscAI	CASTG	3 cut(s)	39, 172, 249
TseI	GCWGC	1 cut(s)	64
TspGWI	ACGGA	3 cut(s)	54, 215, 422
TspRI	CASTG	3 cut(s)	39, 172, 249
Van91I	CCANNNNNTGG	1 cut(s)	266
XapI	RAATTY	2 cut(s)	336, 389
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.