Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012103

Physical Location & Seq

Genomic Coordinates Reverse (-)

43117876 .. 43119724

Gene Structure 1849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0283000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCAGCAGTTTCTTCGATGGCTTTCTAAAGTTACACAAGGACAAGCAAGAGAGGAGACTTCTGCTCCTACCAACAAGAAAAAAGAAATTAGTGATCAAGAAGCTAAACAGAACTACATAATTGTCTTTAAGAGTGGGGGTGTTAGTGTCTATCGAAAAACAAAAGGATTTGAAGAAAGCAAACTCGCTCGTAAGAAGTTCAGGCCATTTGCCTTTCTTTGTAGAAAGGATATAGCACAGGCTTGCTTTCATAGTACTATTCATTTGAGGAGACTTGATAGCATAAATAGGAGGCAGCAAAAGCAGTGTTGGACTCGATCTATGAAGATGAAGAAAGAAGATATTGCTAGAGGTTTGGAAAATAGTAACAAGGTGGATGCAGCTAATGTAGGCAGCAAGGTTTTACCAGTAAGTGACTCGACGTTATCAACCTCTACTAACAAAAACCATGACCAATGTGGAGCATCAGAAAAGAAAGAAAGGATTAAGGGGGACAAGACTAAAACATTATCAAGAATGAAGGAGCTAATAAGATGGGCTGCTGCAGCAAAATCAGCTGAAAAGGGTGGAAAATACATTGGCCGAAAGGTTCTGCAATTTCGCAATCGTGGAACTCTAAAACCAGTACCAGATGATGATCAGTTAAGCAATGACTCCCCAAAGATCAGCTTTAGATGGGAATTGGAAAGCTGCTCCACCACTTCCTCTGCCTACTCGGCAATTTCAGTAGCATCTTCATTGAAGAATGATCAAATTATGAACATTCAATCTTTGAATTCAACGAAGCTGCAGGACTCAGATCACTGGCAACCCAAGAATGGGAATTGGATCACCTCAGACTCAGACTTTGTTGTGCTAGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022402 GO:0031365 GO:0034085 GO:0034087 GO:0034212 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051276 GO:0051604 GO:0052858 GO:0061733 GO:0070601 GO:0071704 GO:0071840 GO:0071962 GO:0098813 GO:0140014 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

288

Amino Acids

32.69

Weight (kDa)

9.84

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11330 AT5G11330
fragaria_vesca	FvH4_2g29790 FvH4_2g29790
malus_domestica	MD08G1141800.v1.1 MD15G1118300.v1.1 MD15G1335000.v1.1
prunus_persica	Prupe.1G471700_v2.0.a1
pyrus_communis	pycom15g10650
rosa_chinensis	RchiOBHm_Chr6g0298811
rosa_laevigata	RLG00000011483
rosa_multiflora	Rmu_co8348659.1_g000001
rosa_roxburghii	Rroxscaffold_7G00169310
rosa_rugosa	Rorug06G0283000
rosa_samantha	Rh6AG394700 Rh6BG402600 Rh6CG408300 Rh6DG395100
rosa_wichuraiana	Rw6G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	836
AcoI	YGGCCR	1 cut(s)	580
AcsI	RAATTY	1 cut(s)	775
AfaI	GTAC	2 cut(s)	256, 627
AfiI	CCNNNNNNNGG	2 cut(s)	818, 819
AgsI	TTSAA	5 cut(s)	173, 742, 767, 775, 780
AluBI	AGCT	8 cut(s)	104, 383, 526, 557, 669, 690, 787, 862
AluI	AGCT	8 cut(s)	104, 383, 526, 557, 669, 690, 787, 862
Alw26I	GTCTC	2 cut(s)	50, 265
AlwI	GGATC	1 cut(s)	836
AoxI	GGCC	2 cut(s)	203, 580
ApeKI	GCWGC	9 cut(s)	4, 295, 380, 393, 539, 542, 545, 690, 787
ApoI	RAATTY	1 cut(s)	775
ArsI	GACNNNNNNTTYG	2 cut(s)	830, 862
AsuHPI	GGTGA	1 cut(s)	823
BbvI	GCAGC	9 cut(s)	16, 307, 392, 405, 526, 529, 557, 677, 774
BccI	CCATC	3 cut(s)	12, 528, 669
BcgI	CGANNNNNNTGC	1 cut(s)	30
BclI	TGATCA	3 cut(s)	94, 637, 748
BcoDI	GTCTC	2 cut(s)	50, 265
BfaI	CTAG	2 cut(s)	348, 857
BfmI	CTRYAG	2 cut(s)	543, 788
BglI	GCCNNNNNGGC	1 cut(s)	716
BisI	GCNGC	9 cut(s)	5, 296, 381, 394, 540, 543, 546, 691, 788
BlsI	GCNGC	9 cut(s)	6, 297, 382, 395, 541, 544, 547, 692, 789
BmcAI	AGTACT	1 cut(s)	256
BmsI	GCATC	3 cut(s)	367, 473, 740
BsaBI	GATNNNNATC	1 cut(s)	636
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	2 cut(s)	818, 819
Bse1I	ACTGG	3 cut(s)	407, 623, 809
Bse3DI	GCAATG	1 cut(s)	655
Bse8I	GATNNNNATC	1 cut(s)	636
BseGI	GGATG	1 cut(s)	382
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	2 cut(s)	818, 819
BseMI	GCAATG	1 cut(s)	655
BseMII	CTCAG	3 cut(s)	810, 849, 855
BseNI	ACTGG	3 cut(s)	407, 623, 809
BseRI	GAGGAG	2 cut(s)	68, 283
BseXI	GCAGC	9 cut(s)	16, 307, 392, 405, 526, 529, 557, 677, 774
BshFI	GGCC	2 cut(s)	205, 582
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	2 cut(s)	818, 819
BsmAI	GTCTC	2 cut(s)	50, 265
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	2 cut(s)	205, 582
Bsp143I	GATC	7 cut(s)	94, 317, 637, 663, 748, 799, 828
BspANI	GGCC	2 cut(s)	205, 582
BspCNI	CTCAG	3 cut(s)	809, 848, 854
BspMAI	CTGCAG	2 cut(s)	547, 792
BspPI	GGATC	1 cut(s)	836
BsrDI	GCAATG	1 cut(s)	655
BsrI	ACTGG	3 cut(s)	407, 623, 809
BssMI	GATC	7 cut(s)	94, 317, 637, 663, 748, 799, 828
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	3 cut(s)	796, 835, 841
BstF5I	GGATG	1 cut(s)	382
BstKTI	GATC	7 cut(s)	97, 320, 640, 666, 751, 802, 831
BstMAI	GTCTC	2 cut(s)	50, 265
BstMBI	GATC	7 cut(s)	94, 317, 637, 663, 748, 799, 828
BstMWI	GCNNNNNNNGC	4 cut(s)	301, 545, 554, 716
BstSFI	CTRYAG	2 cut(s)	543, 788
BstV1I	GCAGC	9 cut(s)	16, 307, 392, 405, 526, 529, 557, 677, 774
BsuRI	GGCC	2 cut(s)	205, 582
BtsCI	GGATG	1 cut(s)	382
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	2 cut(s)	311, 802
Cac8I	GCNNGC	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	255, 626
CviAII	CATG	1 cut(s)	449
CviQI	GTAC	2 cut(s)	255, 626
DdeI	CTNAG	3 cut(s)	796, 835, 841
DpnI	GATC	7 cut(s)	96, 319, 639, 665, 750, 801, 830
DpnII	GATC	7 cut(s)	94, 317, 637, 663, 748, 799, 828
EaeI	YGGCCR	1 cut(s)	580
EcoRI	GAATTC	1 cut(s)	775
FaeI	CATG	1 cut(s)	452
FaiI	YATR	8 cut(s)	119, 233, 252, 284, 323, 450, 758, 865
FalI	AAGNNNNNCTT	2 cut(s)	653, 685
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	1 cut(s)	448
FbaI	TGATCA	3 cut(s)	94, 637, 748
Fnu4HI	GCNGC	9 cut(s)	5, 296, 381, 394, 540, 543, 546, 691, 788
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	9 cut(s)	5, 296, 381, 394, 540, 543, 546, 691, 788
FspBI	CTAG	2 cut(s)	348, 857
GluI	GCNGC	9 cut(s)	5, 296, 381, 394, 540, 543, 546, 691, 788
HaeIII	GGCC	2 cut(s)	205, 582
Hin1II	CATG	1 cut(s)	452
HinfI	GANTC	5 cut(s)	313, 416, 653, 794, 839
HphI	GGTGA	1 cut(s)	823
Hpy188I	TCNGA	4 cut(s)	469, 799, 838, 844
Hpy188III	TCNNGA	2 cut(s)	98, 513
Hpy99I	CGWCG	1 cut(s)	424
HpyAV	CCTTC	1 cut(s)	514
HpyCH4IV	ACGT	1 cut(s)	422
HpyCH4V	TGCA	5 cut(s)	4, 380, 545, 595, 790
HpyF10VI	GCNNNNNNNGC	4 cut(s)	301, 545, 554, 716
HpyF3I	CTNAG	3 cut(s)	796, 835, 841
HpySE526I	ACGT	1 cut(s)	422
Hsp92II	CATG	1 cut(s)	452
Ksp22I	TGATCA	3 cut(s)	94, 637, 748
Kzo9I	GATC	7 cut(s)	94, 317, 637, 663, 748, 799, 828
LmnI	GCTCC	4 cut(s)	70, 461, 523, 698
LpnPI	CCDG	7 cut(s)	187, 224, 420, 636, 642, 776, 790
Lsp1109I	GCAGC	9 cut(s)	16, 307, 392, 405, 526, 529, 557, 677, 774
LweI	GCATC	3 cut(s)	367, 473, 740
MaeI	CTAG	2 cut(s)	348, 857
MaeII	ACGT	1 cut(s)	422
MaeIII	GTNAC	3 cut(s)	31, 365, 413
MalI	GATC	7 cut(s)	96, 319, 639, 665, 750, 801, 830
MboI	GATC	7 cut(s)	94, 317, 637, 663, 748, 799, 828
MboII	GAAGA	7 cut(s)	5, 185, 337, 343, 350, 726, 754
MluCI	AATT	8 cut(s)	87, 120, 596, 680, 720, 753, 775, 823
MlyI	GAGTC	5 cut(s)	307, 410, 647, 788, 833
MmeI	TCCRAC	1 cut(s)	290
MnlI	CCTC	7 cut(s)	46, 261, 285, 344, 442, 715, 844
MseI	TTAA	3 cut(s)	129, 486, 644
MspA1I	CMGCKG	1 cut(s)	557
MwoI	GCNNNNNNNGC	4 cut(s)	301, 545, 554, 716
NdeII	GATC	7 cut(s)	94, 317, 637, 663, 748, 799, 828
NlaIII	CATG	1 cut(s)	452
NmeAIII	GCCGAG	1 cut(s)	695
NmuCI	GTSAC	1 cut(s)	413
PkrI	GCNGC	9 cut(s)	6, 297, 382, 395, 541, 544, 547, 692, 789
PleI	GAGTC	5 cut(s)	307, 410, 647, 788, 833
PpsI	GAGTC	5 cut(s)	307, 410, 647, 788, 833
PstI	CTGCAG	2 cut(s)	547, 792
PvuII	CAGCTG	1 cut(s)	557
RsaI	GTAC	2 cut(s)	256, 627
RsaNI	GTAC	2 cut(s)	255, 626
SaqAI	TTAA	3 cut(s)	129, 486, 644
SatI	GCNGC	9 cut(s)	5, 296, 381, 394, 540, 543, 546, 691, 788
Sau3AI	GATC	7 cut(s)	94, 317, 637, 663, 748, 799, 828
ScaI	AGTACT	1 cut(s)	256
SchI	GAGTC	5 cut(s)	307, 410, 647, 788, 833
SfaNI	GCATC	3 cut(s)	367, 473, 740
SfcI	CTRYAG	2 cut(s)	543, 788
Sse9I	AATT	8 cut(s)	87, 120, 596, 680, 720, 753, 775, 823
SspMI	CTAG	2 cut(s)	348, 857
TaiI	ACGT	1 cut(s)	425
TaqI	TCGA	4 cut(s)	16, 154, 316, 419
TasI	AATT	8 cut(s)	87, 120, 596, 680, 720, 753, 775, 823
TatI	WGTACW	1 cut(s)	254
Tru1I	TTAA	3 cut(s)	129, 486, 644
Tru9I	TTAA	3 cut(s)	129, 486, 644
TscAI	CASTG	2 cut(s)	311, 809
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	9 cut(s)	4, 295, 380, 393, 539, 542, 545, 690, 787
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	7 cut(s)	239, 251, 338, 344, 533, 726, 773
TspRI	CASTG	2 cut(s)	311, 809
XapI	RAATTY	1 cut(s)	775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XspI	CTAG	2 cut(s)	348, 857
ZrmI	AGTACT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.