AT5G11330

Zeaxanthin epoxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012103
Physical Location & Seq
Reverse (-)
3617138 .. 3618913
1776 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11330.2

Sequence Viewer

Length: 1227 bp
ATGGGGAAGAAGAAAGGGAAAGCGATCATAGTAGGAGGAAGTATAGCAGGCTTATCTTGCGCACACTCGCTCACGTTAGCATGCTGGGATGTTTTGGTTCTCGAGAAATCTTCCGAACCTCCTGTTGGGAGTCCTACTGGTGCTGGGCTCGGACTCGACCCTCAGGCTCGGCAGATCATCAAATCATGGCTTACTACTCCACAGCTCTTAGATGAAATCACCTTGCCTCTCTCGATTGATCAGAATCAGACAACTGATAGTGAGAAGAAAGTGACAAGGATTTTAACAAGAGATGAGGATTTTGATTTCCGAGCAGCTTATTGGTCAGATATTCAATCTCTTCTGTATAACGCATTGCCTCAGACCATGTTTCTTTGGGGACATAAGTTTCTGTCTTTCACAATGTCACAAGATGAATCTAATGTAAAGGTTAAGACTTTAGTTGTGGAAACTCAAGAAACTGTTGAAATTGAAGGAGACTTACTTATTGCAGCTGATGGGTGTTTGTCTTCGATTCGGAAAACTTTCTTGCCTGACTTTAAACTGAGGTACTCTGGTTATTGTGCTTGGAGAGGTGTATTTGATTTCTCAGGGAATGAGAACTCGGAAACAGTTAGTGGGATTAAGAAAGTGTATCCGGATCTTGGAAAATGCTTGTATTTTGATCTCGGTGAACAGACTCATAGCGTGTTTTACGAGCTTTTTAACAAGAAACTCAACTGGATTTGGTATGTCAATCAACCAGAGCCTGACCTGAAAAGCAACTCTGTTACTCTAAAAGTGAGTCAAGAAATGATCAATAAGATGCATCAAGAAGCAGAAACCATTTGGATCCCCGAACTAGCGAGACTCATGAGTGAAACAAAGGATCCTTTCCTTAATGTTATTTACGACTCTGACCCTTTAGAACGAATCTTTTGGGGAAACATCGTGTTGGTTGGAGACGCGGCTCATCCCACGACCCCTCATGGTCTAAGAAGCACAAACATGTCGATACTTGATGCGGAAGTGCTAGGCAAATGCTTAGAGAACTGTGGACCTGAGAATGTAAGTTTGGGTCTTGAGGAATATCAGAGAATAAGATTGCCTGTTGTTTCTGAGCAAGTTTTGTATGCAAGGCGTTTGGGGCGTATCAAGCAAGGTCTGGATCATGACGGAATTGGAGATGGCGTTTTTGGTTTGGAGCAGAGAAACATGCCATTCTTTTCCTGTGCTCCCCTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3 NAD_binding_8

Protein Analysis

408

Amino Acids

45.76

Weight (kDa)

5.12

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 8 - 176 9.9e-08 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11330 AT5G11330
fragaria_vesca FvH4_2g29790 FvH4_2g29790
malus_domestica MD08G1141800.v1.1 MD15G1118300.v1.1 MD15G1335000.v1.1
prunus_persica Prupe.1G471700_v2.0.a1
pyrus_communis pycom15g10650
rosa_chinensis RchiOBHm_Chr6g0298811
rosa_laevigata RLG00000011483
rosa_multiflora Rmu_co8348659.1_g000001
rosa_roxburghii Rroxscaffold_7G00169310
rosa_rugosa Rorug06G0283000
rosa_samantha Rh6AG394700 Rh6BG402600 Rh6CG408300 Rh6DG395100
rosa_wichuraiana Rw6G034530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 61
AccII CGCG 1 cut(s) 947
AccIII TCCGGA 1 cut(s) 637
AciI CCGC 2 cut(s) 947, 1004
AclWI GGATC 6 cut(s) 648, 826, 839, 863, 876, 1155
AfaI GTAC 1 cut(s) 551
AfiI CCNNNNNNNGG 2 cut(s) 125, 644
AflIII ACRYGT 1 cut(s) 987
AgsI TTSAA 3 cut(s) 335, 467, 473
AjuI GAANNNNNNNTTGG 4 cut(s) 108, 140, 1037, 1069
AluBI AGCT 4 cut(s) 205, 317, 494, 700
AluI AGCT 4 cut(s) 205, 317, 494, 700
Alw21I GWGCWC 1 cut(s) 1216
Alw26I GTCTC 3 cut(s) 471, 841, 936
AlwI GGATC 6 cut(s) 648, 826, 839, 863, 876, 1155
AlwNI CAGNNNCTG 1 cut(s) 749
Ama87I CYCGRG 1 cut(s) 101
Aor13HI TCCGGA 1 cut(s) 637
ApeKI GCWGC 2 cut(s) 314, 491
Asp700I GAANNNNTTC 1 cut(s) 524
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 1037
AsuHPI GGTGA 2 cut(s) 211, 683
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 1 cut(s) 1037
AxyI CCTNAGG 1 cut(s) 162
BaeI ACNNNNGTAYC 2 cut(s) 541, 574
BamHI GGATCC 2 cut(s) 831, 868
BanII GRGCYC 1 cut(s) 150
BarI GAAGNNNNNNTAC 2 cut(s) 465, 497
BbsI GAAGAC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 1216
BbvI GCAGC 2 cut(s) 326, 503
BccI CCATC 2 cut(s) 491, 1160
BciVI GTATCC 1 cut(s) 645
BclI TGATCA 2 cut(s) 238, 795
BcoDI GTCTC 3 cut(s) 471, 841, 936
BfaI CTAG 3 cut(s) 842, 1013, 1225
BfuI GTATCC 1 cut(s) 645
BisI GCNGC 3 cut(s) 315, 492, 948
BlsI GCNGC 3 cut(s) 316, 493, 949
Bme18I GGWCC 1 cut(s) 1037
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 1037
BmiI GGNNCC 2 cut(s) 833, 870
BmsI GCATC 3 cut(s) 795, 817, 991
BpiI GAAGAC 1 cut(s) 501
BpuEI CTTGAG 2 cut(s) 438, 1082
BsaBI GATNNNNATC 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 637
BsaXI ACNNNNNCTCC 2 cut(s) 1155, 1185
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 644
Bse1I ACTGG 2 cut(s) 142, 725
Bse21I CCTNAGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 353
Bse8I GATNNNNATC 1 cut(s) 243
BseAI TCCGGA 1 cut(s) 637
BseGI GGATG 2 cut(s) 94, 952
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 2 cut(s) 125, 644
BseMI GCAATG 1 cut(s) 353
BseMII CTCAG 6 cut(s) 176, 374, 536, 603, 1032, 1089
BseNI ACTGG 2 cut(s) 142, 725
BseXI GCAGC 2 cut(s) 326, 503
BseYI CCCAGC 2 cut(s) 84, 143
Bsh1236I CGCG 1 cut(s) 947
BsiHKAI GWGCWC 1 cut(s) 1216
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 1 cut(s) 638
BslFI GGGAC 1 cut(s) 393
BslI CCNNNNNNNGG 2 cut(s) 125, 644
BsmAI GTCTC 3 cut(s) 471, 841, 936
BsmBI CGTCTC 1 cut(s) 936
BsmFI GGGAC 1 cut(s) 393
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 150, 1216
Bsp13I TCCGGA 1 cut(s) 637
Bsp143I GATC 9 cut(s) 24, 174, 238, 640, 664, 795, 831, 868, 1147
BspACI CCGC 2 cut(s) 947, 1004
BspCNI CTCAG 6 cut(s) 175, 373, 537, 602, 1033, 1090
BspEI TCCGGA 1 cut(s) 637
BspFNI CGCG 1 cut(s) 947
BspHI TCATGA 2 cut(s) 852, 1150
BspLI GGNNCC 2 cut(s) 833, 870
BspPI GGATC 6 cut(s) 648, 826, 839, 863, 876, 1155
BsrDI GCAATG 1 cut(s) 353
BsrI ACTGG 2 cut(s) 142, 725
BssMI GATC 9 cut(s) 24, 174, 238, 640, 664, 795, 831, 868, 1147
Bst4CI ACNGT 3 cut(s) 463, 613, 1034
Bst6I CTCTTC 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 49, 82
BstDEI CTNAG 9 cut(s) 162, 208, 360, 545, 589, 974, 1024, 1041, 1098
BstF5I GGATG 2 cut(s) 94, 952
BstFNI CGCG 1 cut(s) 947
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 9 cut(s) 27, 177, 241, 643, 667, 798, 834, 871, 1150
BstMAI GTCTC 3 cut(s) 471, 841, 936
BstMBI GATC 9 cut(s) 24, 174, 238, 640, 664, 795, 831, 868, 1147
BstMWI GCNNNNNNNGC 3 cut(s) 57, 1126, 1135
BstNSI RCATGY 3 cut(s) 84, 991, 1198
BstUI CGCG 1 cut(s) 947
BstV1I GCAGC 2 cut(s) 326, 503
BstV2I GAAGAC 1 cut(s) 501
BstX2I RGATCY 3 cut(s) 640, 831, 868
BstYI RGATCY 3 cut(s) 640, 831, 868
Bsu36I CCTNAGG 1 cut(s) 162
BsuI GTATCC 1 cut(s) 645
BtsCI GGATG 2 cut(s) 94, 952
Cac8I GCNNGC 2 cut(s) 49, 82
CaiI CAGNNNCTG 1 cut(s) 749
CciI TCATGA 2 cut(s) 852, 1150
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 1037
CseI GACGC 1 cut(s) 953
Csp6I GTAC 1 cut(s) 550
CviAII CATG 8 cut(s) 81, 186, 367, 853, 968, 988, 1151, 1195
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 9 cut(s) 162, 208, 360, 545, 589, 974, 1024, 1041, 1098
DpnI GATC 9 cut(s) 26, 176, 240, 642, 666, 797, 833, 870, 1149
DpnII GATC 9 cut(s) 24, 174, 238, 640, 664, 795, 831, 868, 1147
DraI TTTAAA 1 cut(s) 541
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 1037
Eco81I CCTNAGG 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 101
EcoT22I ATGCAT 1 cut(s) 810
EcoT38I GRGCYC 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 936
FaeI CATG 8 cut(s) 84, 189, 370, 856, 971, 991, 1154, 1198
FaqI GGGAC 1 cut(s) 393
FatI CATG 8 cut(s) 80, 185, 366, 852, 967, 987, 1150, 1194
FbaI TGATCA 2 cut(s) 238, 795
Fnu4HI GCNGC 3 cut(s) 315, 492, 948
FokI GGATG 2 cut(s) 101, 939
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 3 cut(s) 315, 492, 948
FspBI CTAG 3 cut(s) 842, 1013, 1225
FspI TGCGCA 1 cut(s) 61
GlaI GCGC 1 cut(s) 61
GluI GCNGC 3 cut(s) 315, 492, 948
GsaI CCCAGC 2 cut(s) 88, 147
HapII CCGG 1 cut(s) 638
HgaI GACGC 1 cut(s) 953
HhaI GCGC 1 cut(s) 62
Hin1II CATG 8 cut(s) 84, 189, 370, 856, 971, 991, 1154, 1198
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HpaII CCGG 1 cut(s) 638
HphI GGTGA 2 cut(s) 211, 683
Hpy166II GTNNAC 2 cut(s) 674, 1037
Hpy8I GTNNAC 2 cut(s) 674, 1037
HpyAV CCTTC 1 cut(s) 467
HpyCH4III ACNGT 3 cut(s) 463, 613, 1034
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 3 cut(s) 491, 808, 1115
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 1126, 1135
HpyF3I CTNAG 9 cut(s) 162, 208, 360, 545, 589, 974, 1024, 1041, 1098
HpySE526I ACGT 1 cut(s) 74
Hsp92II CATG 8 cut(s) 84, 189, 370, 856, 971, 991, 1154, 1198
HspAI GCGC 1 cut(s) 60
Kpn2I TCCGGA 1 cut(s) 637
Ksp22I TGATCA 2 cut(s) 238, 795
Kzo9I GATC 9 cut(s) 24, 174, 238, 640, 664, 795, 831, 868, 1147
LmnI GCTCC 2 cut(s) 1183, 1219
Lsp1109I GCAGC 2 cut(s) 326, 503
LweI GCATC 3 cut(s) 795, 817, 991
MaeI CTAG 3 cut(s) 842, 1013, 1225
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 3 cut(s) 271, 405, 769
MalI GATC 9 cut(s) 26, 176, 240, 642, 666, 797, 833, 870, 1149
MboI GATC 9 cut(s) 24, 174, 238, 640, 664, 795, 831, 868, 1147
MboII GAAGA 6 cut(s) 19, 22, 102, 277, 332, 501
MflI RGATCY 3 cut(s) 640, 831, 868
MhlI GDGCHC 2 cut(s) 150, 1216
MluCI AATT 2 cut(s) 468, 1158
MlyI GAGTC 6 cut(s) 139, 147, 673, 793, 843, 887
MmeI TCCRAC 1 cut(s) 919
Mph1103I ATGCAT 1 cut(s) 810
MroI TCCGGA 1 cut(s) 637
MroXI GAANNNNTTC 1 cut(s) 524
MseI TTAA 6 cut(s) 284, 432, 540, 624, 705, 879
MslI CAYNNNNRTG 1 cut(s) 986
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 1 cut(s) 638
MvnI CGCG 1 cut(s) 947
MwoI GCNNNNNNNGC 3 cut(s) 57, 1126, 1135
NdeII GATC 9 cut(s) 24, 174, 238, 640, 664, 795, 831, 868, 1147
NlaIII CATG 8 cut(s) 84, 189, 370, 856, 971, 991, 1154, 1198
NlaIV GGNNCC 2 cut(s) 833, 870
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 2 cut(s) 271, 405
NsbI TGCGCA 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 810
NspI RCATGY 3 cut(s) 84, 991, 1198
PaeI GCATGC 1 cut(s) 84
PaeR7I CTCGAG 1 cut(s) 101
PagI TCATGA 2 cut(s) 852, 1150
PciI ACATGT 1 cut(s) 987
PdmI GAANNNNTTC 1 cut(s) 524
PfeI GAWTC 4 cut(s) 244, 416, 514, 912
PkrI GCNGC 3 cut(s) 316, 493, 949
PleI GAGTC 6 cut(s) 138, 147, 673, 792, 843, 887
PpsI GAGTC 6 cut(s) 138, 147, 673, 792, 843, 887
PscI ACATGT 1 cut(s) 987
PspFI CCCAGC 2 cut(s) 84, 143
PspN4I GGNNCC 2 cut(s) 833, 870
PspPI GGNCC 1 cut(s) 1037
PstNI CAGNNNCTG 1 cut(s) 749
PsuI RGATCY 3 cut(s) 640, 831, 868
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
RseI CAYNNNNRTG 1 cut(s) 986
SaqAI TTAA 6 cut(s) 284, 432, 540, 624, 705, 879
SatI GCNGC 3 cut(s) 315, 492, 948
Sau3AI GATC 9 cut(s) 24, 174, 238, 640, 664, 795, 831, 868, 1147
Sau96I GGNCC 1 cut(s) 1037
SchI GAGTC 6 cut(s) 139, 147, 673, 793, 843, 887
SduI GDGCHC 2 cut(s) 150, 1216
SfaNI GCATC 3 cut(s) 795, 817, 991
Sfr274I CTCGAG 1 cut(s) 101
SinI GGWCC 1 cut(s) 1037
SlaI CTCGAG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 986
SmlI CTYRAG 3 cut(s) 101, 453, 1061
SmoI CTYRAG 3 cut(s) 101, 453, 1061
SphI GCATGC 1 cut(s) 84
Sse9I AATT 2 cut(s) 468, 1158
SsiI CCGC 2 cut(s) 947, 1004
SspMI CTAG 3 cut(s) 842, 1013, 1225
TaaI ACNGT 3 cut(s) 463, 613, 1034
TaiI ACGT 1 cut(s) 77
TaqI TCGA 5 cut(s) 102, 156, 233, 512, 992
TasI AATT 2 cut(s) 468, 1158
TauI GCSGC 1 cut(s) 950
TfiI GAWTC 4 cut(s) 244, 416, 514, 912
Tru1I TTAA 6 cut(s) 284, 432, 540, 624, 705, 879
Tru9I TTAA 6 cut(s) 284, 432, 540, 624, 705, 879
TseFI GTSAC 2 cut(s) 271, 405
TseI GCWGC 2 cut(s) 314, 491
Tsp45I GTSAC 2 cut(s) 271, 405
TspDTI ATGAA 2 cut(s) 228, 429
TspGWI ACGGA 1 cut(s) 1170
VpaK11BI GGWCC 1 cut(s) 1037
XceI RCATGY 3 cut(s) 84, 991, 1198
XhoI CTCGAG 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 524
XspI CTAG 3 cut(s) 842, 1013, 1225
Zsp2I ATGCAT 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.