Rroxscaffold_7G00169310

Zeaxanthin epoxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012103
Physical Location & Seq
Reverse (-)
10002433 .. 10003869
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169310.1

Sequence Viewer

Length: 1056 bp
ATGACTCTGGAAAAGAAGCCCCAGGCAGTAATAGTAGGAGGGAGCATAGCAGGACTAGGACTTGACCCTCTCTCCCTGCAACTCATTCAGTCTTGGATCAAAGACCCTGAGCTTCTCAACAGGACCACCCTACCCCTCACAATTGATCAGAATGATGCTGTGGATGGTGAGAAGAAGGTTAAGTGGACACTAACCAGAGATGAGAAGTTTAACTGCAGAGCAGCACATTGGGCTGACCTACATGCTCTTTTATATCATGCTTTGCCACCTAACTTGTTTCTTTGGGGTCACCATTTCCAATCTTTCTCCATTTCTAGTGACAAGAGATCAGTTCAAGTGAAGGCTTTATCCCTTCAAAGTAACGAGATCATTGAAATCGTTGGGGATTTGCTTGTTGCGGCAGATGGGTGTCTCTCTAAAATCCGCCAAAGCTTTGTGCCTGATCATAAGCTGAGGTATTCAGGTTATTGTGCATGGAGAGGGGTTCTTGATTTTTCAGGAAATGAGAATTCCGAAACCATAATGGGGATCCGAAAGGCATACCCTGAACTCGGGAAATGCTTGTACTTCGGCTTAGCAAGCAGCGACGGGATCCAGGCAATGCACAAAGAAGCAGAGAAGATGTGGCTTCCTGAGTTCGTGCGAGTCATCAAAGAAACAAGCCACCCTTTCATCAATGCCATATATGACAGTGAACCCTTGAAGCAAATCTATTGGGACAATGTGGTATTGGTTGGAGATGCAGCTCACCCCACAACTCCTCATGCAGTAAGAAGCACAAACATGTCGGTCTTGGATGCTGCAGTGTTAGGTCAGTGCCTGAAGAAGTGGGGTGCAGAAAACTTGCAATCAGCTCTTGAAGAATATCAGTCCATTCGGTTACCAGTCGTATCGAAGCAAGTCCTTCATGCAAGGAGAATGGGGAGGATTAAACAAGGTCTAGTTCTTCCTGACCGACAGTCTTTTGACCCCAAGAAGGCTGATCCAGAGGAGTGCCAAGAGCTTCAACAGAAACTCATGCCTTTTTTCTCTGACGTTCCTCCCATTTTAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3 NAD_binding_8

Protein Analysis

351

Amino Acids

39.43

Weight (kDa)

6.6

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 239 - 301 8.7e-06 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11330 AT5G11330
fragaria_vesca FvH4_2g29790 FvH4_2g29790
malus_domestica MD08G1141800.v1.1 MD15G1118300.v1.1 MD15G1335000.v1.1
prunus_persica Prupe.1G471700_v2.0.a1
pyrus_communis pycom15g10650
rosa_chinensis RchiOBHm_Chr6g0298811
rosa_laevigata RLG00000011483
rosa_multiflora Rmu_co8348659.1_g000001
rosa_roxburghii Rroxscaffold_7G00169310
rosa_rugosa Rorug06G0283000
rosa_samantha Rh6AG394700 Rh6BG402600 Rh6CG408300 Rh6DG395100
rosa_wichuraiana Rw6G034530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 398, 424
AclWI GGATC 6 cut(s) 104, 523, 536, 586, 599, 977
AcsI RAATTY 1 cut(s) 508
AcuI CTGAAG 1 cut(s) 842
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 3 cut(s) 525, 551, 976
AflIII ACRYGT 1 cut(s) 783
AgsI TTSAA 6 cut(s) 335, 356, 374, 703, 860, 1007
AhdI GACNNNNNGTC 1 cut(s) 958
AjnI CCWGG 2 cut(s) 21, 594
AluBI AGCT 6 cut(s) 112, 432, 451, 746, 854, 1003
AluI AGCT 6 cut(s) 112, 432, 451, 746, 854, 1003
Alw26I GTCTC 1 cut(s) 416
AlwI GGATC 6 cut(s) 104, 523, 536, 586, 599, 977
AlwNI CAGNNNCTG 1 cut(s) 820
Ama87I CYCGRG 1 cut(s) 551
ApeKI GCWGC 4 cut(s) 221, 582, 743, 800
ApoI RAATTY 1 cut(s) 508
AspS9I GGNCC 1 cut(s) 123
AsuHPI GGTGA 3 cut(s) 179, 281, 740
AvaI CYCGRG 1 cut(s) 551
AvaII GGWCC 1 cut(s) 123
BamHI GGATCC 2 cut(s) 528, 591
BbvCI CCTCAGC 1 cut(s) 452
BbvI GCAGC 4 cut(s) 233, 594, 755, 787
BccI CCATC 2 cut(s) 158, 398
BciT130I CCWGG 2 cut(s) 23, 596
BclI TGATCA 2 cut(s) 145, 442
BcoDI GTCTC 1 cut(s) 416
BfaI CTAG 3 cut(s) 56, 315, 941
BfmI CTRYAG 2 cut(s) 214, 801
BisI GCNGC 5 cut(s) 222, 399, 583, 744, 801
BlpI GCTNAGC 1 cut(s) 574
BlsI GCNGC 5 cut(s) 223, 400, 584, 745, 802
Bme1390I CCNGG 2 cut(s) 23, 596
Bme18I GGWCC 1 cut(s) 123
BmeRI GACNNNNNGTC 1 cut(s) 958
BmeT110I CYCGRG 1 cut(s) 551
BmgT120I GGNCC 1 cut(s) 123
BmiI GGNNCC 2 cut(s) 530, 593
BmrFI CCNGG 2 cut(s) 23, 596
BmsI GCATC 3 cut(s) 145, 730, 787
Bpu10I CCTNAGC 2 cut(s) 108, 452
Bpu1102I GCTNAGC 1 cut(s) 574
BsaJI CCNNGG 1 cut(s) 21
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 3 cut(s) 525, 551, 976
Bse1I ACTGG 1 cut(s) 884
Bse3DI GCAATG 1 cut(s) 606
BseBI CCWGG 2 cut(s) 23, 596
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 2 cut(s) 169, 802
BseLI CCNNNNNNNGG 3 cut(s) 525, 551, 976
BseMI GCAATG 1 cut(s) 606
BseMII CTCAG 3 cut(s) 99, 443, 624
BseNI ACTGG 1 cut(s) 884
BseRI GAGGAG 2 cut(s) 750, 1004
BseXI GCAGC 4 cut(s) 233, 594, 755, 787
BsgI GTGCAG 1 cut(s) 855
BsiHKCI CYCGRG 1 cut(s) 551
BslFI GGGAC 1 cut(s) 731
BslI CCNNNNNNNGG 3 cut(s) 525, 551, 976
BsmAI GTCTC 1 cut(s) 416
BsmFI GGGAC 1 cut(s) 731
BsoBI CYCGRG 1 cut(s) 551
Bsp143I GATC 8 cut(s) 96, 145, 326, 366, 442, 528, 591, 982
Bsp1720I GCTNAGC 1 cut(s) 574
BspACI CCGC 2 cut(s) 398, 424
BspCNI CTCAG 3 cut(s) 100, 444, 625
BspLI GGNNCC 2 cut(s) 530, 593
BspMAI CTGCAG 2 cut(s) 218, 805
BspPI GGATC 6 cut(s) 104, 523, 536, 586, 599, 977
BsrDI GCAATG 1 cut(s) 606
BsrI ACTGG 1 cut(s) 884
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 8 cut(s) 96, 145, 326, 366, 442, 528, 591, 982
Bst2UI CCWGG 2 cut(s) 23, 596
Bst4CI ACNGT 2 cut(s) 692, 960
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 4 cut(s) 108, 452, 574, 633
BstEII GGTNACC 2 cut(s) 287, 879
BstF5I GGATG 2 cut(s) 169, 802
BstKTI GATC 8 cut(s) 99, 148, 329, 369, 445, 531, 594, 985
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 8 cut(s) 96, 145, 326, 366, 442, 528, 591, 982
BstMWI GCNNNNNNNGC 2 cut(s) 230, 579
BstNI CCWGG 2 cut(s) 23, 596
BstNSI RCATGY 2 cut(s) 245, 787
BstPI GGTNACC 2 cut(s) 287, 879
BstSCI CCNGG 2 cut(s) 21, 594
BstSFI CTRYAG 2 cut(s) 214, 801
BstV1I GCAGC 4 cut(s) 233, 594, 755, 787
BstX2I RGATCY 2 cut(s) 528, 591
BstYI RGATCY 2 cut(s) 528, 591
BtsCI GGATG 2 cut(s) 169, 802
BtsI GCAGTG 1 cut(s) 810
BtsIMutI CAGTG 3 cut(s) 697, 810, 821
Cac8I GCNNGC 1 cut(s) 580
CaiI CAGNNNCTG 1 cut(s) 820
Cfr13I GGNCC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 565
CspCI CAANNNNNGTGG 2 cut(s) 255, 290
CviAII CATG 7 cut(s) 242, 257, 474, 764, 784, 908, 1018
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 4 cut(s) 108, 452, 574, 633
DpnI GATC 8 cut(s) 98, 147, 328, 368, 444, 530, 593, 984
DpnII GATC 8 cut(s) 96, 145, 326, 366, 442, 528, 591, 982
DriI GACNNNNNGTC 1 cut(s) 958
Eam1105I GACNNNNNGTC 1 cut(s) 958
EciI GGCGGA 1 cut(s) 413
Eco47I GGWCC 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 842
Eco88I CYCGRG 1 cut(s) 551
Eco91I GGTNACC 2 cut(s) 287, 879
EcoO65I GGTNACC 2 cut(s) 287, 879
EcoRI GAATTC 1 cut(s) 508
EcoRII CCWGG 2 cut(s) 21, 594
FaeI CATG 7 cut(s) 245, 260, 477, 767, 787, 911, 1021
FalI AAGNNNNNCTT 2 cut(s) 652, 684
FaqI GGGAC 1 cut(s) 731
FatI CATG 7 cut(s) 241, 256, 473, 763, 783, 907, 1017
FbaI TGATCA 2 cut(s) 145, 442
Fnu4HI GCNGC 5 cut(s) 222, 399, 583, 744, 801
FokI GGATG 2 cut(s) 176, 809
Fsp4HI GCNGC 5 cut(s) 222, 399, 583, 744, 801
FspBI CTAG 3 cut(s) 56, 315, 941
GluI GCNGC 5 cut(s) 222, 399, 583, 744, 801
Hin1II CATG 7 cut(s) 245, 260, 477, 767, 787, 911, 1021
HindIII AAGCTT 1 cut(s) 430
HinfI GANTC 2 cut(s) 4, 645
HphI GGTGA 3 cut(s) 179, 281, 740
Hpy166II GTNNAC 2 cut(s) 186, 695
Hpy188I TCNGA 4 cut(s) 150, 514, 533, 1033
Hpy188III TCNNGA 8 cut(s) 8, 488, 498, 553, 632, 857, 950, 986
Hpy8I GTNNAC 2 cut(s) 186, 695
Hpy99I CGWCG 1 cut(s) 590
HpyAV CCTTC 5 cut(s) 169, 334, 362, 914, 970
HpyCH4III ACNGT 2 cut(s) 692, 960
HpyCH4IV ACGT 1 cut(s) 1035
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 579
HpyF3I CTNAG 4 cut(s) 108, 452, 574, 633
HpySE526I ACGT 1 cut(s) 1035
Hsp92II CATG 7 cut(s) 245, 260, 477, 767, 787, 911, 1021
Ksp22I TGATCA 2 cut(s) 145, 442
Kzo9I GATC 8 cut(s) 96, 145, 326, 366, 442, 528, 591, 982
LmnI GCTCC 1 cut(s) 42
Lsp1109I GCAGC 4 cut(s) 233, 594, 755, 787
LweI GCATC 3 cut(s) 145, 730, 787
MaeI CTAG 3 cut(s) 56, 315, 941
MaeII ACGT 1 cut(s) 1035
MaeIII GTNAC 4 cut(s) 287, 317, 359, 879
MalI GATC 8 cut(s) 98, 147, 328, 368, 444, 530, 593, 984
MboI GATC 8 cut(s) 96, 145, 326, 366, 442, 528, 591, 982
MboII GAAGA 5 cut(s) 184, 631, 835, 872, 938
MfeI CAATTG 1 cut(s) 141
MflI RGATCY 2 cut(s) 528, 591
MluCI AATT 2 cut(s) 141, 508
MlyI GAGTC 1 cut(s) 654
MmeI TCCRAC 1 cut(s) 715
MnlI CCTC 9 cut(s) 32, 78, 146, 447, 473, 771, 918, 982, 1050
MseI TTAA 3 cut(s) 180, 210, 930
MslI CAYNNNNRTG 2 cut(s) 782, 1049
MspR9I CCNGG 2 cut(s) 23, 596
MunI CAATTG 1 cut(s) 141
MvaI CCWGG 2 cut(s) 23, 596
MwoI GCNNNNNNNGC 2 cut(s) 230, 579
NdeII GATC 8 cut(s) 96, 145, 326, 366, 442, 528, 591, 982
NlaIII CATG 7 cut(s) 245, 260, 477, 767, 787, 911, 1021
NlaIV GGNNCC 2 cut(s) 530, 593
NmuCI GTSAC 2 cut(s) 287, 317
NspI RCATGY 2 cut(s) 245, 787
PciI ACATGT 1 cut(s) 783
PkrI GCNGC 5 cut(s) 223, 400, 584, 745, 802
PleI GAGTC 1 cut(s) 653
PpsI GAGTC 1 cut(s) 653
PscI ACATGT 1 cut(s) 783
Psp6I CCWGG 2 cut(s) 21, 594
PspEI GGTNACC 2 cut(s) 287, 879
PspGI CCWGG 2 cut(s) 21, 594
PspN4I GGNNCC 2 cut(s) 530, 593
PspPI GGNCC 1 cut(s) 123
PstI CTGCAG 2 cut(s) 218, 805
PstNI CAGNNNCTG 1 cut(s) 820
PsuI RGATCY 2 cut(s) 528, 591
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
RseI CAYNNNNRTG 2 cut(s) 782, 1049
SaqAI TTAA 3 cut(s) 180, 210, 930
SatI GCNGC 5 cut(s) 222, 399, 583, 744, 801
Sau3AI GATC 8 cut(s) 96, 145, 326, 366, 442, 528, 591, 982
Sau96I GGNCC 1 cut(s) 123
SchI GAGTC 1 cut(s) 654
ScrFI CCNGG 2 cut(s) 23, 596
SfaNI GCATC 3 cut(s) 145, 730, 787
SfcI CTRYAG 2 cut(s) 214, 801
SinI GGWCC 1 cut(s) 123
SmiMI CAYNNNNRTG 2 cut(s) 782, 1049
Sse9I AATT 2 cut(s) 141, 508
SsiI CCGC 2 cut(s) 398, 424
SspMI CTAG 3 cut(s) 56, 315, 941
StyD4I CCNGG 2 cut(s) 21, 594
TaaI ACNGT 2 cut(s) 692, 960
TaiI ACGT 1 cut(s) 1038
TaqI TCGA 1 cut(s) 893
TaqII GACCGA 2 cut(s) 778, 969
TasI AATT 2 cut(s) 141, 508
TatI WGTACW 1 cut(s) 564
TauI GCSGC 1 cut(s) 401
Tru1I TTAA 3 cut(s) 180, 210, 930
Tru9I TTAA 3 cut(s) 180, 210, 930
TscAI CASTG 3 cut(s) 697, 810, 821
TseFI GTSAC 2 cut(s) 287, 317
TseI GCWGC 4 cut(s) 221, 582, 743, 800
Tsp45I GTSAC 2 cut(s) 287, 317
TspDTI ATGAA 2 cut(s) 661, 896
TspRI CASTG 3 cut(s) 697, 810, 821
VpaK11BI GGWCC 1 cut(s) 123
XapI RAATTY 1 cut(s) 508
XceI RCATGY 2 cut(s) 245, 787
XspI CTAG 3 cut(s) 56, 315, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.