MD08G1141800.v1.1

Zeaxanthin epoxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0012103
Physical Location & Seq
Reverse (-)
13963152 .. 13964856
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1141800.v1.1.491

Sequence Viewer

Length: 1263 bp
ATGAGTCTGAAGAAAAAACCCAAGGCAGTAATAGTGGGAGGGAGCATAGCAGGGGTATCATGCGCACATACGCTCGTATTAACAGGGTGGAACGTTTTGGTGGTGGAGAAATCATGTGCTCCCCCAACTGGAAGCCAAACTGGGGCAGGACTTGGCCTTGACCCTCTCTCTCTCAGACTCATCCAGTCATGGATTCAAGACCCTGAGCTTCTTCACCAGACCACTCTGCCCTTTACAATTGATCAGAATGATGCCATAGATGGTGAGAAAAAGGTGAAATGGACACTAACTAGAGATGAGGAGTTGAACTGTAGAGCAGGACATTGGGGTGACCTACATGCTCTTCTATACAATGCACTTCCACCAAACCTATTTCTTTGGGGTCACCGTTTCCTATCTTTCTCCATTTCTAGTGACAAGTCTTCAGTTATAGTGAAGGCTTCATCCCATGAAACCAATGAAGTCATTGAAATCATCGGTGATTTGCTCATTGCAGCGGATGGATGTCTCTCTTCGATCCGCCAAAGTTTTGTTCCTGACCATAAACTGAGGTATTCGGGTTATTGCGCATGGAGAGGGGTGCTTGATTTTGCAGGAAATGAGAATTCAGAAACCATAATCGGCATCCGAAAGGAATACCCTGAGCTTGGAAAATGCTTGTACTTTGGCTTAGGTTCTGGGACTCACACTGTGCTGTATGAGCTTCCGAACCGAAGGCTGAATTGGATTTGGTATGTCCATCAGCCCGAACCTGATCTGAAGCCTAACTCGATGACCATGAAGGCGAGCAGCGACATGATCCAGAGTATGCACAAAGAAGCAGAGAAAATGTGGCTTCCGGAGTTTGTGAGAGTGATCAGAGAAACAAAAGAGCCCTTCATCAATGCTATATATGACAGCGACCCCTTGGAAAAAATCTACTGGGACAATGTGGTACTAGTTGGAGATGCAGCACACCCCACAACTCCTCATGCCTTAAGAAGCACGAACATGTCGGTGCTAGATGCTGCGGTGTTAGGTCAATGCTTGAAGAAGTGGGGAGCAGAAGATTTGCAATTTGCTCTTGAAGGATATCAATCAATTCGATTACCAGTCGTGCGTAAACAAGTCTTGCACGCAAGGCGAATGGGTCGGATTAAACAAGGCCTTGTTCTTCCTGATCGCCAGCTTTCCAACCCCGAGACCGCTAACCCAGAAGAGTGTCACGAGCTTCAGCAGAAACTCATGCCCTTTTTCACCGATGTTCCATCCATACTACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3 NAD_binding_8

Protein Analysis

421

Amino Acids

47.07

Weight (kDa)

6.28

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11330 AT5G11330
fragaria_vesca FvH4_2g29790 FvH4_2g29790
malus_domestica MD08G1141800.v1.1 MD15G1118300.v1.1 MD15G1335000.v1.1
prunus_persica Prupe.1G471700_v2.0.a1
pyrus_communis pycom15g10650
rosa_chinensis RchiOBHm_Chr6g0298811
rosa_laevigata RLG00000011483
rosa_multiflora Rmu_co8348659.1_g000001
rosa_roxburghii Rroxscaffold_7G00169310
rosa_rugosa Rorug06G0283000
rosa_samantha Rh6AG394700 Rh6BG402600 Rh6CG408300 Rh6DG395100
rosa_wichuraiana Rw6G034530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 64, 568
AccIII TCCGGA 1 cut(s) 838
AciI CCGC 4 cut(s) 497, 520, 1010, 1185
AclI AACGTT 1 cut(s) 93
AclWI GGATC 2 cut(s) 511, 793
AcsI RAATTY 1 cut(s) 604
AcuI CTGAAG 4 cut(s) 29, 408, 779, 1196
AdeI CACNNNGTG 1 cut(s) 691
AfaI GTAC 2 cut(s) 662, 936
AfiI CCNNNNNNNGG 3 cut(s) 128, 142, 647
AflII CTTAAG 1 cut(s) 976
AflIII ACRYGT 1 cut(s) 990
AgsI TTSAA 5 cut(s) 197, 307, 470, 1030, 1067
AhlI ACTAGT 1 cut(s) 937
AjuI GAANNNNNNNTTGG 4 cut(s) 516, 548, 706, 738
AluBI AGCT 5 cut(s) 208, 646, 703, 1168, 1210
AluI AGCT 5 cut(s) 208, 646, 703, 1168, 1210
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 2 cut(s) 512, 1175
AlwI GGATC 2 cut(s) 511, 793
Ama87I CYCGRG 1 cut(s) 1178
Aor13HI TCCGGA 1 cut(s) 838
AoxI GGCC 2 cut(s) 154, 1144
ApeKI GCWGC 4 cut(s) 494, 789, 950, 1007
ApoI RAATTY 1 cut(s) 604
AspLEI GCGC 2 cut(s) 65, 569
AsuHPI GGTGA 7 cut(s) 206, 275, 286, 341, 377, 491, 1228
AvaI CYCGRG 1 cut(s) 1178
BanII GRGCYC 1 cut(s) 876
BauI CACGAG 1 cut(s) 1205
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 4 cut(s) 506, 801, 962, 994
BccI CCATC 4 cut(s) 254, 494, 747, 1255
BclI TGATCA 2 cut(s) 241, 855
BcoDI GTCTC 2 cut(s) 512, 1175
BcuI ACTAGT 1 cut(s) 937
BfaI CTAG 4 cut(s) 291, 411, 938, 1001
BfmI CTRYAG 1 cut(s) 310
BfrI CTTAAG 1 cut(s) 976
BisI GCNGC 4 cut(s) 495, 790, 951, 1008
BlsI GCNGC 4 cut(s) 496, 791, 952, 1009
BmeT110I CYCGRG 1 cut(s) 1178
BmrI ACTGGG 2 cut(s) 150, 931
BmsI GCATC 4 cut(s) 241, 633, 937, 994
BmuI ACTGGG 2 cut(s) 150, 931
BpiI GAAGAC 1 cut(s) 414
Bpu10I CCTNAGC 3 cut(s) 204, 642, 670
BsaBI GATNNNNATC 1 cut(s) 1075
BsaI GGTCTC 1 cut(s) 1175
BsaJI CCNNGG 2 cut(s) 21, 906
BsaWI WCCGGW 1 cut(s) 838
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 142, 647
Bse1I ACTGG 5 cut(s) 133, 145, 184, 926, 1091
Bse3DI GCAATG 1 cut(s) 489
Bse8I GATNNNNATC 1 cut(s) 1075
BseAI TCCGGA 1 cut(s) 838
BseDI CCNNGG 2 cut(s) 21, 906
BseGI GGATG 6 cut(s) 180, 443, 505, 509, 624, 1247
BseJI GATNNNNATC 1 cut(s) 1075
BseLI CCNNNNNNNGG 3 cut(s) 128, 142, 647
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 4 cut(s) 187, 195, 539, 633
BseNI ACTGG 5 cut(s) 133, 145, 184, 926, 1091
BseRI GAGGAG 2 cut(s) 314, 957
BseXI GCAGC 4 cut(s) 506, 801, 962, 994
BshFI GGCC 2 cut(s) 156, 1146
BsiHKAI GWGCWC 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 1178
BsiSI CCGG 1 cut(s) 839
BslFI GGGAC 2 cut(s) 694, 938
BslI CCNNNNNNNGG 3 cut(s) 128, 142, 647
BsmAI GTCTC 2 cut(s) 512, 1175
BsmFI GGGAC 2 cut(s) 694, 938
BsnI GGCC 2 cut(s) 156, 1146
Bso31I GGTCTC 1 cut(s) 1175
BsoBI CYCGRG 1 cut(s) 1178
Bsp1286I GDGCHC 2 cut(s) 121, 876
Bsp13I TCCGGA 1 cut(s) 838
Bsp143I GATC 6 cut(s) 241, 516, 754, 798, 855, 1159
BspACI CCGC 4 cut(s) 497, 520, 1010, 1185
BspANI GGCC 2 cut(s) 156, 1146
BspCNI CTCAG 4 cut(s) 186, 196, 540, 634
BspEI TCCGGA 1 cut(s) 838
BspPI GGATC 2 cut(s) 511, 793
BspQI GCTCTTC 1 cut(s) 348
BspTI CTTAAG 1 cut(s) 976
BspTNI GGTCTC 1 cut(s) 1175
BsrDI GCAATG 1 cut(s) 489
BsrI ACTGG 5 cut(s) 133, 145, 184, 926, 1091
BssECI CCNNGG 2 cut(s) 21, 906
BssMI GATC 6 cut(s) 241, 516, 754, 798, 855, 1159
BssSI CACGAG 1 cut(s) 1205
BssT1I CCWWGG 2 cut(s) 21, 906
Bst2BI CACGAG 1 cut(s) 1205
Bst4CI ACNGT 3 cut(s) 311, 389, 691
Bst6I CTCTTC 3 cut(s) 348, 517, 1191
BstAFI CTTAAG 1 cut(s) 976
BstC8I GCNNGC 3 cut(s) 787, 1116, 1166
BstDEI CTNAG 5 cut(s) 173, 204, 548, 642, 670
BstEII GGTNACC 2 cut(s) 329, 383
BstF5I GGATG 6 cut(s) 180, 443, 505, 509, 624, 1247
BstHHI GCGC 2 cut(s) 65, 569
BstKTI GATC 6 cut(s) 244, 519, 757, 801, 858, 1162
BstMAI GTCTC 2 cut(s) 512, 1175
BstMBI GATC 6 cut(s) 241, 516, 754, 798, 855, 1159
BstMWI GCNNNNNNNGC 2 cut(s) 700, 1120
BstNSI RCATGY 2 cut(s) 341, 994
BstPI GGTNACC 2 cut(s) 329, 383
BstSFI CTRYAG 1 cut(s) 310
BstV1I GCAGC 4 cut(s) 506, 801, 962, 994
BstV2I GAAGAC 1 cut(s) 414
BsuRI GGCC 2 cut(s) 156, 1146
BtsCI GGATG 6 cut(s) 180, 443, 505, 509, 624, 1247
BtsIMutI CAGTG 1 cut(s) 687
Cac8I GCNNGC 3 cut(s) 787, 1116, 1166
CfoI GCGC 2 cut(s) 65, 569
Csp6I GTAC 2 cut(s) 661, 935
CviQI GTAC 2 cut(s) 661, 935
DdeI CTNAG 5 cut(s) 173, 204, 548, 642, 670
DpnI GATC 6 cut(s) 243, 518, 756, 800, 857, 1161
DpnII GATC 6 cut(s) 241, 516, 754, 798, 855, 1159
DraIII CACNNNGTG 1 cut(s) 691
Eam1104I CTCTTC 3 cut(s) 348, 517, 1191
EarI CTCTTC 3 cut(s) 348, 517, 1191
EciI GGCGGA 1 cut(s) 509
Eco130I CCWWGG 2 cut(s) 21, 906
Eco147I AGGCCT 1 cut(s) 1146
Eco24I GRGCYC 1 cut(s) 876
Eco31I GGTCTC 1 cut(s) 1175
Eco32I GATATC 1 cut(s) 1073
Eco57I CTGAAG 4 cut(s) 29, 408, 779, 1196
Eco88I CYCGRG 1 cut(s) 1178
Eco91I GGTNACC 2 cut(s) 329, 383
EcoO65I GGTNACC 2 cut(s) 329, 383
EcoRI GAATTC 1 cut(s) 604
EcoRV GATATC 1 cut(s) 1073
EcoT14I CCWWGG 2 cut(s) 21, 906
EcoT38I GRGCYC 1 cut(s) 876
ErhI CCWWGG 2 cut(s) 21, 906
FaqI GGGAC 2 cut(s) 694, 938
FbaI TGATCA 2 cut(s) 241, 855
Fnu4HI GCNGC 4 cut(s) 495, 790, 951, 1008
FokI GGATG 6 cut(s) 167, 430, 512, 516, 611, 1234
FriOI GRGCYC 1 cut(s) 876
Fsp4HI GCNGC 4 cut(s) 495, 790, 951, 1008
FspAI RTGCGCAY 1 cut(s) 64
FspBI CTAG 4 cut(s) 291, 411, 938, 1001
FspI TGCGCA 2 cut(s) 64, 568
GlaI GCGC 2 cut(s) 64, 568
GluI GCNGC 4 cut(s) 495, 790, 951, 1008
HaeIII GGCC 2 cut(s) 156, 1146
HapII CCGG 1 cut(s) 839
HhaI GCGC 2 cut(s) 65, 569
Hin6I GCGC 2 cut(s) 63, 567
HinP1I GCGC 2 cut(s) 63, 567
HinfI GANTC 4 cut(s) 4, 177, 193, 682
HpaII CCGG 1 cut(s) 839
HphI GGTGA 7 cut(s) 206, 275, 286, 341, 377, 491, 1228
Hpy166II GTNNAC 1 cut(s) 1103
Hpy188I TCNGA 9 cut(s) 9, 176, 246, 610, 629, 708, 759, 860, 1134
Hpy188III TCNNGA 7 cut(s) 197, 536, 802, 839, 1064, 1157, 1205
Hpy8I GTNNAC 1 cut(s) 1103
HpyAV CCTTC 5 cut(s) 430, 708, 775, 886, 1061
HpyCH4III ACNGT 3 cut(s) 311, 389, 691
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 7 cut(s) 356, 494, 593, 811, 950, 1054, 1114
HpyF10VI GCNNNNNNNGC 2 cut(s) 700, 1120
HpyF3I CTNAG 5 cut(s) 173, 204, 548, 642, 670
HpySE526I ACGT 1 cut(s) 93
HspAI GCGC 2 cut(s) 63, 567
Kpn2I TCCGGA 1 cut(s) 838
Ksp22I TGATCA 2 cut(s) 241, 855
Kzo9I GATC 6 cut(s) 241, 516, 754, 798, 855, 1159
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 3 cut(s) 42, 124, 1040
Lsp1109I GCAGC 4 cut(s) 506, 801, 962, 994
LweI GCATC 4 cut(s) 241, 633, 937, 994
MaeI CTAG 4 cut(s) 291, 411, 938, 1001
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 4 cut(s) 329, 383, 413, 1202
MalI GATC 6 cut(s) 243, 518, 756, 800, 857, 1161
MboI GATC 6 cut(s) 241, 516, 754, 798, 855, 1159
MboII GAAGA 9 cut(s) 22, 203, 335, 414, 504, 1042, 1058, 1145, 1208
MfeI CAATTG 1 cut(s) 237
MhlI GDGCHC 2 cut(s) 121, 876
MluCI AATT 5 cut(s) 237, 604, 721, 1055, 1080
MlyI GAGTC 3 cut(s) 13, 171, 676
MmeI TCCRAC 3 cut(s) 922, 1112, 1197
MnlI CCTC 6 cut(s) 32, 174, 292, 543, 569, 978
MroI TCCGGA 1 cut(s) 838
MseI TTAA 4 cut(s) 80, 977, 1137, 1261
MslI CAYNNNNRTG 3 cut(s) 327, 989, 995
MspA1I CMGCKG 1 cut(s) 497
MspCI CTTAAG 1 cut(s) 976
MspI CCGG 1 cut(s) 839
MunI CAATTG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 700, 1120
NdeII GATC 6 cut(s) 241, 516, 754, 798, 855, 1159
NmuCI GTSAC 4 cut(s) 329, 383, 413, 1202
NsbI TGCGCA 2 cut(s) 64, 568
NspI RCATGY 2 cut(s) 341, 994
PceI AGGCCT 1 cut(s) 1146
PciI ACATGT 1 cut(s) 990
PciSI GCTCTTC 1 cut(s) 348
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 4 cut(s) 496, 791, 952, 1009
PleI GAGTC 3 cut(s) 12, 171, 676
PpsI GAGTC 3 cut(s) 12, 171, 676
PscI ACATGT 1 cut(s) 990
Psp1406I AACGTT 1 cut(s) 93
PspEI GGTNACC 2 cut(s) 329, 383
RsaI GTAC 2 cut(s) 662, 936
RsaNI GTAC 2 cut(s) 661, 935
RseI CAYNNNNRTG 3 cut(s) 327, 989, 995
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 4 cut(s) 80, 977, 1137, 1261
SatI GCNGC 4 cut(s) 495, 790, 951, 1008
Sau3AI GATC 6 cut(s) 241, 516, 754, 798, 855, 1159
SchI GAGTC 3 cut(s) 13, 171, 676
SduI GDGCHC 2 cut(s) 121, 876
SfaNI GCATC 4 cut(s) 241, 633, 937, 994
SfcI CTRYAG 1 cut(s) 310
SmiMI CAYNNNNRTG 3 cut(s) 327, 989, 995
SmlI CTYRAG 1 cut(s) 976
SmoI CTYRAG 1 cut(s) 976
SpeI ACTAGT 1 cut(s) 937
Sse9I AATT 5 cut(s) 237, 604, 721, 1055, 1080
SseBI AGGCCT 1 cut(s) 1146
SsiI CCGC 4 cut(s) 497, 520, 1010, 1185
SspMI CTAG 4 cut(s) 291, 411, 938, 1001
StuI AGGCCT 1 cut(s) 1146
StyI CCWWGG 2 cut(s) 21, 906
TaaI ACNGT 3 cut(s) 311, 389, 691
TaiI ACGT 1 cut(s) 96
TaqI TCGA 3 cut(s) 515, 770, 1084
TasI AATT 5 cut(s) 237, 604, 721, 1055, 1080
TatI WGTACW 1 cut(s) 660
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 4 cut(s) 80, 977, 1137, 1261
Tru9I TTAA 4 cut(s) 80, 977, 1137, 1261
TscAI CASTG 1 cut(s) 694
TseFI GTSAC 4 cut(s) 329, 383, 413, 1202
TseI GCWGC 4 cut(s) 494, 789, 950, 1007
Tsp45I GTSAC 4 cut(s) 329, 383, 413, 1202
TspDTI ATGAA 5 cut(s) 432, 465, 474, 794, 868
TspRI CASTG 1 cut(s) 694
Vha464I CTTAAG 1 cut(s) 976
XapI RAATTY 1 cut(s) 604
XceI RCATGY 2 cut(s) 341, 994
XspI CTAG 4 cut(s) 291, 411, 938, 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.