pycom15g10650

Zeaxanthin epoxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012103
Physical Location & Seq
Reverse (-)
7118197 .. 7119739
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g10650.1

Sequence Viewer

Length: 1299 bp
ATGGAGAGAGATAGAGCGAGGGAGAGGAGGAGAGAGATGAGTCTGAAGAAAAAACCCAAGGCTGTAATTGTGGGAGGGAGCATAGCAGGGGTATCATGCGCCCACTCGCTCATATTAGCGGGGTGGGATGTTTTGGTGGTGGAGAAATCATATGCGCCCCCAACTGGAAGCCCAACTGGGGCTGGACTTGGCCTTGACCCTCTCTCTCTCAGACTCATCCAGTCATGGATTAAAGACCCTGACCTTCTCCACAAGGCCACTCTGCCGCTTACAATTGATCAGAATGATGCAATTGATGGTGAGAATAAGGTGAAATGGACGCTGACTAGAGACGAGGGCTTCAACTGCAGAGCAGCACATTGGGCTGACCTGCATGCCCTTCTGTACAATGCACTACCACCAAACCTGTTTCTTTGGGGTCACCATTTCCTATCTTTCTCCATTTCCAGTGACAAGTCTTCAGTTATAGTGAAGGCTTCATCCCATCGGACCAATGAAATCATCGAAATCGTCGGTGATTTGCTCGTTGCGGCGGATGGATGTCTCTCTTCGATCCGCCACAGTTTTGTCCCTGACCATAAACTGAGGTATTCGGGTTACTGCGCATGGAGAGGGGTGCTTGATTTTACTGGAAATGAGAGTTCAGAAACCTTAACCGGCATCCGAAAGGAATACCCTGAGCTTGGGAAATGTTTGTACTTTGGCTTAGGTTCTGGGACGCACACCGTGCTATACGAGCTTCTGAACCGAAGGCTGAATTGGATTTGGTATGTCCACCAACCTGAGCCTGATCTGAAGCATAACTCGATGACCATGAAAGCGAGCAGCGACATGATCCAGAGTATGCACCAAGAAGCAGAGAAAATGTGGCTTCCAGAGTTTGTGAGAGTGATCAAAGAAACAAAAGAGCCTTTCATCAATGCCATATATGAGAGTGATCCTTTAGAACAAATCTACAGGGACAATGTTGTACTAGTTGGAGATGCAGCTCACCCCACAACTCCTCATGCCCTAAGAAGCACGACAATGTCGGTAGTAGATGCTGCGGTGCTAGGGCAATGCTTGAAGAAGTGGGGAGCAGAAGATTTGCAATCAGCTCTCGAAGAATATCAGTCAATTCGGTTACCAGTCGTGTCCAAACAAGTCCTGCACGCAAGGAGAATGGGTCGGATTAAACAAGGCCTTGTTCTTCCTGATAGACAGCTTTTCAACCCCAAGATTGCTAATCCAGAGGAGTGCCAAGAGCTGCAGCAGAAATTCATGCCCTTTTTCAGGGATGTTCCATCCATACTACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3 NAD_binding_8

Protein Analysis

433

Amino Acids

48.68

Weight (kDa)

6.97

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 21 - 188 7e-06 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11330 AT5G11330
fragaria_vesca FvH4_2g29790 FvH4_2g29790
malus_domestica MD08G1141800.v1.1 MD15G1118300.v1.1 MD15G1335000.v1.1
prunus_persica Prupe.1G471700_v2.0.a1
pyrus_communis pycom15g10650
rosa_chinensis RchiOBHm_Chr6g0298811
rosa_laevigata RLG00000011483
rosa_multiflora Rmu_co8348659.1_g000001
rosa_roxburghii Rroxscaffold_7G00169310
rosa_rugosa Rorug06G0283000
rosa_samantha Rh6AG394700 Rh6BG402600 Rh6CG408300 Rh6DG395100
rosa_wichuraiana Rw6G034530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 604
Acc36I ACCTGC 1 cut(s) 378
AciI CCGC 6 cut(s) 119, 266, 530, 533, 556, 1046
AclWI GGATC 3 cut(s) 547, 829, 932
AcsI RAATTY 1 cut(s) 1256
AcuI CTGAAG 3 cut(s) 65, 444, 815
AdeI CACNNNGTG 1 cut(s) 727
AfaI GTAC 3 cut(s) 386, 698, 972
AfiI CCNNNNNNNGG 4 cut(s) 164, 178, 683, 1272
AgsI TTSAA 3 cut(s) 343, 1066, 1210
AhlI ACTAGT 1 cut(s) 973
AjuI GAANNNNNNNTTGG 2 cut(s) 742, 774
AluBI AGCT 6 cut(s) 682, 739, 989, 1097, 1204, 1246
AluI AGCT 6 cut(s) 682, 739, 989, 1097, 1204, 1246
Alw26I GTCTC 2 cut(s) 324, 548
AlwI GGATC 3 cut(s) 547, 829, 932
AoxI GGCC 3 cut(s) 190, 255, 1180
ApeKI GCWGC 6 cut(s) 353, 825, 986, 1043, 1246, 1249
ApoI RAATTY 1 cut(s) 1256
AspLEI GCGC 3 cut(s) 101, 157, 605
AspS9I GGNCC 1 cut(s) 489
AsuHPI GGTGA 5 cut(s) 311, 322, 413, 527, 983
AvaII GGWCC 1 cut(s) 489
BbsI GAAGAC 1 cut(s) 450
BbvI GCAGC 6 cut(s) 365, 837, 998, 1030, 1233, 1261
BccI CCATC 4 cut(s) 290, 492, 530, 1291
BclI TGATCA 2 cut(s) 277, 891
BcoDI GTCTC 2 cut(s) 324, 548
BcuI ACTAGT 1 cut(s) 973
BfaI CTAG 3 cut(s) 327, 974, 1052
BfmI CTRYAG 3 cut(s) 346, 955, 1247
BfuAI ACCTGC 1 cut(s) 378
BisI GCNGC 8 cut(s) 266, 354, 531, 826, 987, 1044, 1247, 1250
BlsI GCNGC 8 cut(s) 267, 355, 532, 827, 988, 1045, 1248, 1251
Bme18I GGWCC 1 cut(s) 489
BmgT120I GGNCC 1 cut(s) 489
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 4 cut(s) 277, 669, 973, 1030
BmuI ACTGGG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 450
Bpu10I CCTNAGC 3 cut(s) 678, 706, 783
BsaJI CCNNGG 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 1150, 1180
Bsc4I CCNNNNNNNGG 4 cut(s) 164, 178, 683, 1272
Bse118I RCCGGY 1 cut(s) 656
Bse1I ACTGG 6 cut(s) 169, 181, 220, 447, 634, 1127
Bse3DI GCAATG 1 cut(s) 1064
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 8 cut(s) 133, 216, 479, 541, 545, 660, 1282, 1283
BseLI CCNNNNNNNGG 4 cut(s) 164, 178, 683, 1272
BseMI GCAATG 1 cut(s) 1064
BseMII CTCAG 4 cut(s) 223, 575, 669, 774
BseNI ACTGG 6 cut(s) 169, 181, 220, 447, 634, 1127
BseRI GAGGAG 4 cut(s) 40, 43, 993, 1247
BseXI GCAGC 6 cut(s) 365, 837, 998, 1030, 1233, 1261
BsgI GTGCAG 1 cut(s) 1133
BshFI GGCC 3 cut(s) 192, 257, 1182
BsiSI CCGG 1 cut(s) 657
BslFI GGGAC 3 cut(s) 554, 730, 974
BslI CCNNNNNNNGG 4 cut(s) 164, 178, 683, 1272
BsmAI GTCTC 2 cut(s) 324, 548
BsmBI CGTCTC 1 cut(s) 324
BsmFI GGGAC 3 cut(s) 554, 730, 974
BsnI GGCC 3 cut(s) 192, 257, 1182
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 6 cut(s) 277, 552, 790, 834, 891, 937
BspACI CCGC 6 cut(s) 119, 266, 530, 533, 556, 1046
BspANI GGCC 3 cut(s) 192, 257, 1182
BspCNI CTCAG 4 cut(s) 222, 576, 670, 775
BspMAI CTGCAG 2 cut(s) 350, 1251
BspMI ACCTGC 1 cut(s) 378
BspPI GGATC 3 cut(s) 547, 829, 932
BsrDI GCAATG 1 cut(s) 1064
BsrFI RCCGGY 1 cut(s) 656
BsrGI TGTACA 1 cut(s) 384
BsrI ACTGG 6 cut(s) 169, 181, 220, 447, 634, 1127
BssAI RCCGGY 1 cut(s) 656
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 6 cut(s) 277, 552, 790, 834, 891, 937
BssT1I CCWWGG 1 cut(s) 57
Bst4CI ACNGT 2 cut(s) 563, 727
Bst6I CTCTTC 1 cut(s) 553
BstAPI GCANNNNNTGC 1 cut(s) 727
BstAUI TGTACA 1 cut(s) 384
BstC8I GCNNGC 3 cut(s) 375, 823, 1152
BstDEI CTNAG 6 cut(s) 209, 584, 678, 706, 783, 1013
BstEII GGTNACC 2 cut(s) 419, 1122
BstENI CCTNNNNNAGG 1 cut(s) 1270
BstF5I GGATG 8 cut(s) 133, 216, 479, 541, 545, 660, 1282, 1283
BstHHI GCGC 3 cut(s) 101, 157, 605
BstKTI GATC 6 cut(s) 280, 555, 793, 837, 894, 940
BstMAI GTCTC 2 cut(s) 324, 548
BstMBI GATC 6 cut(s) 277, 552, 790, 834, 891, 937
BstMWI GCNNNNNNNGC 4 cut(s) 345, 362, 727, 736
BstNSI RCATGY 1 cut(s) 377
BstPI GGTNACC 2 cut(s) 419, 1122
BstSFI CTRYAG 3 cut(s) 346, 955, 1247
BstV1I GCAGC 6 cut(s) 365, 837, 998, 1030, 1233, 1261
BstV2I GAAGAC 1 cut(s) 450
BsuRI GGCC 3 cut(s) 192, 257, 1182
BtsCI GGATG 8 cut(s) 133, 216, 479, 541, 545, 660, 1282, 1283
BtsIMutI CAGTG 1 cut(s) 454
BveI ACCTGC 1 cut(s) 378
Cac8I GCNNGC 3 cut(s) 375, 823, 1152
CfoI GCGC 3 cut(s) 101, 157, 605
Cfr10I RCCGGY 1 cut(s) 656
Cfr13I GGNCC 1 cut(s) 489
CseI GACGC 2 cut(s) 328, 727
Csp6I GTAC 3 cut(s) 385, 697, 971
CviAII CATG 8 cut(s) 96, 225, 374, 606, 814, 832, 1007, 1261
CviQI GTAC 3 cut(s) 385, 697, 971
DdeI CTNAG 6 cut(s) 209, 584, 678, 706, 783, 1013
DpnI GATC 6 cut(s) 279, 554, 792, 836, 893, 939
DpnII GATC 6 cut(s) 277, 552, 790, 834, 891, 937
DraIII CACNNNGTG 1 cut(s) 727
Eam1104I CTCTTC 1 cut(s) 553
EarI CTCTTC 1 cut(s) 553
EciI GGCGGA 2 cut(s) 545, 548
Eco130I CCWWGG 1 cut(s) 57
Eco147I AGGCCT 1 cut(s) 1182
Eco47I GGWCC 1 cut(s) 489
Eco57I CTGAAG 3 cut(s) 65, 444, 815
Eco91I GGTNACC 2 cut(s) 419, 1122
EcoNI CCTNNNNNAGG 1 cut(s) 1270
EcoO65I GGTNACC 2 cut(s) 419, 1122
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
Esp3I CGTCTC 1 cut(s) 324
FaeI CATG 8 cut(s) 99, 228, 377, 609, 817, 835, 1010, 1264
FaqI GGGAC 3 cut(s) 554, 730, 974
FatI CATG 8 cut(s) 95, 224, 373, 605, 813, 831, 1006, 1260
FauI CCCGC 1 cut(s) 112
FauNDI CATATG 1 cut(s) 151
FbaI TGATCA 2 cut(s) 277, 891
Fnu4HI GCNGC 8 cut(s) 266, 354, 531, 826, 987, 1044, 1247, 1250
FokI GGATG 8 cut(s) 140, 203, 466, 548, 552, 647, 1270, 1289
Fsp4HI GCNGC 8 cut(s) 266, 354, 531, 826, 987, 1044, 1247, 1250
FspBI CTAG 3 cut(s) 327, 974, 1052
FspI TGCGCA 1 cut(s) 604
GlaI GCGC 3 cut(s) 100, 156, 604
GluI GCNGC 8 cut(s) 266, 354, 531, 826, 987, 1044, 1247, 1250
HaeIII GGCC 3 cut(s) 192, 257, 1182
HapII CCGG 1 cut(s) 657
HgaI GACGC 2 cut(s) 328, 727
HhaI GCGC 3 cut(s) 101, 157, 605
Hin1II CATG 8 cut(s) 99, 228, 377, 609, 817, 835, 1010, 1264
Hin6I GCGC 3 cut(s) 99, 155, 603
HinP1I GCGC 3 cut(s) 99, 155, 603
HinfI GANTC 2 cut(s) 40, 213
HpaII CCGG 1 cut(s) 657
HphI GGTGA 5 cut(s) 311, 322, 413, 527, 983
Hpy166II GTNNAC 1 cut(s) 775
Hpy188I TCNGA 9 cut(s) 45, 212, 282, 489, 646, 665, 744, 795, 1170
Hpy188III TCNNGA 5 cut(s) 838, 875, 1100, 1193, 1229
Hpy8I GTNNAC 1 cut(s) 775
Hpy99I CGWCG 1 cut(s) 515
HpyAV CCTTC 4 cut(s) 254, 389, 466, 744
HpyCH4III ACNGT 2 cut(s) 563, 727
HpyCH4V TGCA 9 cut(s) 290, 348, 373, 392, 847, 986, 1090, 1150, 1249
HpyF10VI GCNNNNNNNGC 4 cut(s) 345, 362, 727, 736
HpyF3I CTNAG 6 cut(s) 209, 584, 678, 706, 783, 1013
Hsp92II CATG 8 cut(s) 99, 228, 377, 609, 817, 835, 1010, 1264
HspAI GCGC 3 cut(s) 99, 155, 603
Ksp22I TGATCA 2 cut(s) 277, 891
Kzo9I GATC 6 cut(s) 277, 552, 790, 834, 891, 937
LmnI GCTCC 2 cut(s) 78, 1076
Lsp1109I GCAGC 6 cut(s) 365, 837, 998, 1030, 1233, 1261
LweI GCATC 4 cut(s) 277, 669, 973, 1030
MaeI CTAG 3 cut(s) 327, 974, 1052
MaeIII GTNAC 4 cut(s) 419, 449, 596, 1122
MalI GATC 6 cut(s) 279, 554, 792, 836, 893, 939
MboI GATC 6 cut(s) 277, 552, 790, 834, 891, 937
MboII GAAGA 7 cut(s) 58, 450, 540, 1078, 1094, 1115, 1181
MfeI CAATTG 2 cut(s) 273, 291
MluCI AATT 6 cut(s) 66, 273, 291, 757, 1116, 1256
MlyI GAGTC 2 cut(s) 49, 207
MmeI TCCRAC 2 cut(s) 958, 1148
MseI TTAA 4 cut(s) 231, 653, 1173, 1297
MslI CAYNNNNRTG 1 cut(s) 1025
MspI CCGG 1 cut(s) 657
MunI CAATTG 2 cut(s) 273, 291
MwoI GCNNNNNNNGC 4 cut(s) 345, 362, 727, 736
NdeI CATATG 1 cut(s) 151
NdeII GATC 6 cut(s) 277, 552, 790, 834, 891, 937
NlaIII CATG 8 cut(s) 99, 228, 377, 609, 817, 835, 1010, 1264
NmuCI GTSAC 2 cut(s) 419, 449
NsbI TGCGCA 1 cut(s) 604
NspI RCATGY 1 cut(s) 377
PaeI GCATGC 1 cut(s) 377
PceI AGGCCT 1 cut(s) 1182
PflFI GACNNNGTC 1 cut(s) 1027
PkrI GCNGC 8 cut(s) 267, 355, 532, 827, 988, 1045, 1248, 1251
PleI GAGTC 2 cut(s) 48, 207
PpsI GAGTC 2 cut(s) 48, 207
PspEI GGTNACC 2 cut(s) 419, 1122
PspPI GGNCC 1 cut(s) 489
PstI CTGCAG 2 cut(s) 350, 1251
PsyI GACNNNGTC 1 cut(s) 1027
RsaI GTAC 3 cut(s) 386, 698, 972
RsaNI GTAC 3 cut(s) 385, 697, 971
RseI CAYNNNNRTG 1 cut(s) 1025
SaqAI TTAA 4 cut(s) 231, 653, 1173, 1297
SatI GCNGC 8 cut(s) 266, 354, 531, 826, 987, 1044, 1247, 1250
Sau3AI GATC 6 cut(s) 277, 552, 790, 834, 891, 937
Sau96I GGNCC 1 cut(s) 489
SchI GAGTC 2 cut(s) 49, 207
SfaNI GCATC 4 cut(s) 277, 669, 973, 1030
SfcI CTRYAG 3 cut(s) 346, 955, 1247
SinI GGWCC 1 cut(s) 489
SmiMI CAYNNNNRTG 1 cut(s) 1025
SpeI ACTAGT 1 cut(s) 973
SphI GCATGC 1 cut(s) 377
Sse9I AATT 6 cut(s) 66, 273, 291, 757, 1116, 1256
SseBI AGGCCT 1 cut(s) 1182
SsiI CCGC 6 cut(s) 119, 266, 530, 533, 556, 1046
SspMI CTAG 3 cut(s) 327, 974, 1052
StuI AGGCCT 1 cut(s) 1182
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 2 cut(s) 563, 727
TaqI TCGA 4 cut(s) 504, 551, 806, 1101
TasI AATT 6 cut(s) 66, 273, 291, 757, 1116, 1256
TatI WGTACW 3 cut(s) 384, 696, 970
TauI GCSGC 2 cut(s) 268, 533
Tru1I TTAA 4 cut(s) 231, 653, 1173, 1297
Tru9I TTAA 4 cut(s) 231, 653, 1173, 1297
TscAI CASTG 1 cut(s) 454
TseFI GTSAC 2 cut(s) 419, 449
TseI GCWGC 6 cut(s) 353, 825, 986, 1043, 1246, 1249
Tsp45I GTSAC 2 cut(s) 419, 449
TspDTI ATGAA 5 cut(s) 468, 510, 830, 904, 1249
TspRI CASTG 1 cut(s) 454
Tth111I GACNNNGTC 1 cut(s) 1027
VpaK11BI GGWCC 1 cut(s) 489
XagI CCTNNNNNAGG 1 cut(s) 1270
XapI RAATTY 1 cut(s) 1256
XceI RCATGY 1 cut(s) 377
XspI CTAG 3 cut(s) 327, 974, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.