MD15G1335000.v1.1

Zeaxanthin epoxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0012103
Physical Location & Seq
Reverse (-)
37356046 .. 37357076
1031 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1335000.v1.1.491

Sequence Viewer

Length: 696 bp
ATGGAGTTTGTGAACAGGCTTGAGGACTGGACCAAACTCATCAAGATTTCGGATCCTATGGAAGAAGGTTGCAGGCTTGGCCCTGTTGTTAGTAAGGGGCAGGATTTCAACTGCAGAGCAGCACATTGGGCTGACCTGCATGCCCTTCTGTACAATGCATTACCACCAAACCTGTTTCTTTGGGGTCACCATTTCCTATCTTTCTCCATTTCCAGTGACAAGTCTTCAGTTATAGTGAAGGCTTCATCCCATCAGACTAATGAAATCATCGAAATTGTCGGTGATTTGCTCGTTGCAGCGGATGGATGTCTCTCTTCGATCCGCCAAAGTTTTGTCCCTGACCATAAACTGAGGTATTCGGGTTACTGCGCATGGAGAGGGGTGCTTGATTTTACAGGAAATGAGAGTTCAGAAACCTTAACCGGCATCCGAAGGGAATACCCTGAGCTTGGGAAATGCTTGTACTTTGGCTTAGGTTCTGGGACGCACACCGTGCTATACGAGCTTCTGAACCGAAGGCTGAATTGGATTTGGTATGTCCACCAACCGGAGCCTGATCTGAAGCATAACTCGATGACCATGAAAGCGACCAGCAACATGATCCAGAGTATGCACAAAGAAGCAGAGAAAATGTGGCTTCCAGAGTTTGTGAGAGTGATCAAGGAAACAAAAGAGCCTTTCTCGTGGCTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3 NAD_binding_8

Protein Analysis

232

Amino Acids

26.55

Weight (kDa)

6.2

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11330 AT5G11330
fragaria_vesca FvH4_2g29790 FvH4_2g29790
malus_domestica MD08G1141800.v1.1 MD15G1118300.v1.1 MD15G1335000.v1.1
prunus_persica Prupe.1G471700_v2.0.a1
pyrus_communis pycom15g10650
rosa_chinensis RchiOBHm_Chr6g0298811
rosa_laevigata RLG00000011483
rosa_multiflora Rmu_co8348659.1_g000001
rosa_roxburghii Rroxscaffold_7G00169310
rosa_rugosa Rorug06G0283000
rosa_samantha Rh6AG394700 Rh6BG402600 Rh6CG408300 Rh6DG395100
rosa_wichuraiana Rw6G034530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 370
Acc36I ACCTGC 1 cut(s) 144
AciI CCGC 2 cut(s) 299, 322
AclWI GGATC 4 cut(s) 47, 60, 313, 595
AcuI CTGAAG 2 cut(s) 210, 581
AdeI CACNNNGTG 1 cut(s) 493
AfaI GTAC 2 cut(s) 152, 464
AfiI CCNNNNNNNGG 2 cut(s) 449, 547
AgsI TTSAA 2 cut(s) 109, 692
AjuI GAANNNNNNNTTGG 2 cut(s) 508, 540
AluBI AGCT 2 cut(s) 448, 505
AluI AGCT 2 cut(s) 448, 505
Alw26I GTCTC 1 cut(s) 314
AlwI GGATC 4 cut(s) 47, 60, 313, 595
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 119, 296
AspLEI GCGC 1 cut(s) 371
AspS9I GGNCC 2 cut(s) 30, 80
AsuHPI GGTGA 2 cut(s) 179, 293
AvaII GGWCC 1 cut(s) 30
BamHI GGATCC 1 cut(s) 52
BauI CACGAG 1 cut(s) 682
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 131, 308
BccI CCATC 2 cut(s) 258, 296
BclI TGATCA 1 cut(s) 657
BcoDI GTCTC 1 cut(s) 314
BfmI CTRYAG 1 cut(s) 112
BfuAI ACCTGC 1 cut(s) 144
BisI GCNGC 2 cut(s) 120, 297
BlsI GCNGC 2 cut(s) 121, 298
Bme18I GGWCC 1 cut(s) 30
BmgT120I GGNCC 2 cut(s) 30, 80
BmiI GGNNCC 2 cut(s) 54, 552
BmsI GCATC 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 216
BplI GAGNNNNNCTC 1 cut(s) 665
Bpu10I CCTNAGC 2 cut(s) 444, 472
BpuEI CTTGAG 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 547
Bsc4I CCNNNNNNNGG 2 cut(s) 449, 547
Bse118I RCCGGY 1 cut(s) 422
Bse1I ACTGG 2 cut(s) 32, 213
BseGI GGATG 4 cut(s) 245, 307, 311, 426
BseLI CCNNNNNNNGG 2 cut(s) 449, 547
BseMII CTCAG 2 cut(s) 341, 435
BseNI ACTGG 2 cut(s) 32, 213
BseXI GCAGC 2 cut(s) 131, 308
BshFI GGCC 1 cut(s) 81
BsiSI CCGG 2 cut(s) 423, 548
BslFI GGGAC 2 cut(s) 320, 496
BslI CCNNNNNNNGG 2 cut(s) 449, 547
BsmAI GTCTC 1 cut(s) 314
BsmFI GGGAC 2 cut(s) 320, 496
BsnI GGCC 1 cut(s) 81
Bsp1407I TGTACA 1 cut(s) 150
Bsp143I GATC 5 cut(s) 52, 318, 556, 600, 657
BspACI CCGC 2 cut(s) 299, 322
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 2 cut(s) 342, 436
BspLI GGNNCC 2 cut(s) 54, 552
BspMAI CTGCAG 1 cut(s) 116
BspMI ACCTGC 1 cut(s) 144
BspPI GGATC 4 cut(s) 47, 60, 313, 595
BsrFI RCCGGY 1 cut(s) 422
BsrGI TGTACA 1 cut(s) 150
BsrI ACTGG 2 cut(s) 32, 213
BssAI RCCGGY 1 cut(s) 422
BssMI GATC 5 cut(s) 52, 318, 556, 600, 657
BssSI CACGAG 1 cut(s) 682
Bst2BI CACGAG 1 cut(s) 682
Bst4CI ACNGT 1 cut(s) 493
Bst6I CTCTTC 1 cut(s) 319
BstAPI GCANNNNNTGC 1 cut(s) 493
BstAUI TGTACA 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 74, 141
BstDEI CTNAG 3 cut(s) 350, 444, 472
BstEII GGTNACC 1 cut(s) 185
BstF5I GGATG 4 cut(s) 245, 307, 311, 426
BstHHI GCGC 1 cut(s) 371
BstKTI GATC 5 cut(s) 55, 321, 559, 603, 660
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 5 cut(s) 52, 318, 556, 600, 657
BstMWI GCNNNNNNNGC 4 cut(s) 78, 128, 493, 502
BstNSI RCATGY 1 cut(s) 143
BstPI GGTNACC 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 112
BstV1I GCAGC 2 cut(s) 131, 308
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 1 cut(s) 81
BtsCI GGATG 4 cut(s) 245, 307, 311, 426
BtsIMutI CAGTG 1 cut(s) 220
BveI ACCTGC 1 cut(s) 144
Cac8I GCNNGC 2 cut(s) 74, 141
CfoI GCGC 1 cut(s) 371
Cfr10I RCCGGY 1 cut(s) 422
Cfr13I GGNCC 2 cut(s) 30, 80
CseI GACGC 1 cut(s) 493
Csp6I GTAC 2 cut(s) 151, 463
CviAII CATG 4 cut(s) 140, 372, 580, 598
CviQI GTAC 2 cut(s) 151, 463
DdeI CTNAG 3 cut(s) 350, 444, 472
DpnI GATC 5 cut(s) 54, 320, 558, 602, 659
DpnII GATC 5 cut(s) 52, 318, 556, 600, 657
DraIII CACNNNGTG 1 cut(s) 493
Eam1104I CTCTTC 1 cut(s) 319
EarI CTCTTC 1 cut(s) 319
EciI GGCGGA 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 210, 581
Eco91I GGTNACC 1 cut(s) 185
EcoO65I GGTNACC 1 cut(s) 185
EcoT22I ATGCAT 1 cut(s) 160
FaeI CATG 4 cut(s) 143, 375, 583, 601
FaqI GGGAC 2 cut(s) 320, 496
FatI CATG 4 cut(s) 139, 371, 579, 597
FbaI TGATCA 1 cut(s) 657
Fnu4HI GCNGC 2 cut(s) 120, 297
FokI GGATG 4 cut(s) 232, 314, 318, 413
Fsp4HI GCNGC 2 cut(s) 120, 297
FspI TGCGCA 1 cut(s) 370
GlaI GCGC 1 cut(s) 370
GluI GCNGC 2 cut(s) 120, 297
HaeIII GGCC 1 cut(s) 81
HapII CCGG 2 cut(s) 423, 548
HgaI GACGC 1 cut(s) 493
HhaI GCGC 1 cut(s) 371
Hin1II CATG 4 cut(s) 143, 375, 583, 601
Hin6I GCGC 1 cut(s) 369
HinP1I GCGC 1 cut(s) 369
HpaII CCGG 2 cut(s) 423, 548
HphI GGTGA 2 cut(s) 179, 293
Hpy166II GTNNAC 2 cut(s) 13, 541
Hpy188I TCNGA 6 cut(s) 52, 255, 412, 431, 510, 561
Hpy188III TCNNGA 3 cut(s) 43, 604, 641
Hpy8I GTNNAC 2 cut(s) 13, 541
HpyAV CCTTC 5 cut(s) 59, 155, 232, 426, 510
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4V TGCA 6 cut(s) 72, 114, 139, 158, 296, 613
HpyF10VI GCNNNNNNNGC 4 cut(s) 78, 128, 493, 502
HpyF3I CTNAG 3 cut(s) 350, 444, 472
Hsp92II CATG 4 cut(s) 143, 375, 583, 601
HspAI GCGC 1 cut(s) 369
Ksp22I TGATCA 1 cut(s) 657
Kzo9I GATC 5 cut(s) 52, 318, 556, 600, 657
LmnI GCTCC 1 cut(s) 550
Lsp1109I GCAGC 2 cut(s) 131, 308
LweI GCATC 1 cut(s) 435
MaeIII GTNAC 3 cut(s) 185, 215, 362
MalI GATC 5 cut(s) 54, 320, 558, 602, 659
MboI GATC 5 cut(s) 52, 318, 556, 600, 657
MboII GAAGA 3 cut(s) 74, 216, 306
MflI RGATCY 1 cut(s) 52
MluCI AATT 2 cut(s) 273, 523
MnlI CCTC 3 cut(s) 16, 345, 371
Mph1103I ATGCAT 1 cut(s) 160
MseI TTAA 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 2 cut(s) 423, 548
MwoI GCNNNNNNNGC 4 cut(s) 78, 128, 493, 502
NdeII GATC 5 cut(s) 52, 318, 556, 600, 657
NlaIII CATG 4 cut(s) 143, 375, 583, 601
NlaIV GGNNCC 2 cut(s) 54, 552
NmuCI GTSAC 2 cut(s) 185, 215
NsbI TGCGCA 1 cut(s) 370
NsiI ATGCAT 1 cut(s) 160
NspI RCATGY 1 cut(s) 143
PaeI GCATGC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 121, 298
PspEI GGTNACC 1 cut(s) 185
PspN4I GGNNCC 2 cut(s) 54, 552
PspPI GGNCC 2 cut(s) 30, 80
PstI CTGCAG 1 cut(s) 116
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 2 cut(s) 152, 464
RsaNI GTAC 2 cut(s) 151, 463
SaqAI TTAA 1 cut(s) 419
SatI GCNGC 2 cut(s) 120, 297
Sau3AI GATC 5 cut(s) 52, 318, 556, 600, 657
Sau96I GGNCC 2 cut(s) 30, 80
SetI ASST 8 cut(s) 70, 138, 174, 356, 419, 450, 478, 507
SfaNI GCATC 1 cut(s) 435
SfcI CTRYAG 1 cut(s) 112
SinI GGWCC 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SphI GCATGC 1 cut(s) 143
Sse9I AATT 2 cut(s) 273, 523
SsiI CCGC 2 cut(s) 299, 322
TaaI ACNGT 1 cut(s) 493
TaqI TCGA 3 cut(s) 270, 317, 572
TasI AATT 2 cut(s) 273, 523
TatI WGTACW 2 cut(s) 150, 462
Tru1I TTAA 1 cut(s) 419
Tru9I TTAA 1 cut(s) 419
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 2 cut(s) 185, 215
TseI GCWGC 2 cut(s) 119, 296
Tsp45I GTSAC 2 cut(s) 185, 215
TspDTI ATGAA 3 cut(s) 234, 276, 596
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 30
XceI RCATGY 1 cut(s) 143
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.