Prupe.1G471700_v2.0.a1

Zeaxanthin epoxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012103
Physical Location & Seq
Reverse (-)
39249369 .. 39251491
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G471700.1

Sequence Viewer

Length: 1266 bp
ATGACTGATCAGAAGAAAAAGCCCAAGGCAGTGATAGTGGGAGGGAGCATAGCAGGGGTATCATGCGCACACACGCTAATATTAGCTGGGTGGGATGTTGTGGTGGTAGAGAAATCATATGCAGCCCCAACTGGAAGCCCAACTGGGGCAGGACTTGGCCTTGACCCTCTGGCTCTAAAACTCATTCAGTCATGGATCAAAGAGCCCGAGCTTCTCAACAAGGCCACTTTACCCCTCACAATTGATCAGAATGATGCAATAGATGGTGAGAAAAAGGTAAAATGGACATTAACTAGAGATGAGGACTTCAACTGTAGAGCAGCACATTGGGCTGACCTACATGCCCTTCTGTACAATGCTCTACCACCAAACTTGTTTCTCTGGGGTCACCATTTCCTATCTTTCACTGTTTCTAGTGACAAGGGTTCAGTTAAAGTGAAGGCCACAGCTCATCAAACGAATGAGATCATCGAAATCGTAGGCGATTTGCTTGTTGCAGCAGATGGGTGCCTCTCCTCTATCCGCCAAAGTTTTGTCCCTGACCATAAACTGAGGTATTCAGGTTATTGTGCATGGAGAGGCGTTCTTGATTTTTCAGGAAATGAGAATTCAGAAACTATAATCGGCATCCGGAAGGCATACCCTGAACTTGGGAAATGCTTGTACTTTGGCTTAGGTTCTGGAAGTCACACTGTGCTATATGAGCTTCTGAATCAGAGGCTCAATTGGATTTGGTATGTCCACCAGCCAGAGCCTGATCTGAAGCGTAACTCGATGACCACGAAAGCAGGCAGTTACATGATCCAGAATATGCACAAAGAAGCAGAGAAGGTGTGGCTTCCAGAGTTTGTGAGAGTGATCAAAGAAACTAGGGACCCTTTCATCAATGCCATTTATGACAGTGAACCCTTAGAACAAATCTACCGGGACAATGTGGTACTAGTTGGAGATGCGGCTCATCCCACAACTCCTCATGCCGTAAGAAGCACGAACATGTCGGTATTAGATGCTGCAGTGCTAGGCCAATGCCTGAAGAAGTGGGGAGTAGAAAATTTGCAATCAGCTCTCGAAGAATATCAGTCGATTCGGCTACCAGTTGTATCCAAACAAGTCTTGCACGCAAGGCGAATGGGTCGGATTAAACAAGGCCTGGTTCTTCCTGATCGACCATCTTTCGACCCCAAGACTGCTAATTCAGAGGAATGCCAAGAGCTTCATCAGAGACTCATGCCCTTTTTCAGTGATGTTCCTGCCATACTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3 NAD_binding_8

Protein Analysis

422

Amino Acids

46.96

Weight (kDa)

6.71

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11330 AT5G11330
fragaria_vesca FvH4_2g29790 FvH4_2g29790
malus_domestica MD08G1141800.v1.1 MD15G1118300.v1.1 MD15G1335000.v1.1
prunus_persica Prupe.1G471700_v2.0.a1
pyrus_communis pycom15g10650
rosa_chinensis RchiOBHm_Chr6g0298811
rosa_laevigata RLG00000011483
rosa_multiflora Rmu_co8348659.1_g000001
rosa_roxburghii Rroxscaffold_7G00169310
rosa_rugosa Rorug06G0283000
rosa_samantha Rh6AG394700 Rh6BG402600 Rh6CG408300 Rh6DG395100
rosa_wichuraiana Rw6G034530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 67
AccB1I GGYRCC 1 cut(s) 507
AccIII TCCGGA 1 cut(s) 630
AciI CCGC 2 cut(s) 523, 953
AclWI GGATC 2 cut(s) 203, 796
AcsI RAATTY 2 cut(s) 607, 1051
AcuI CTGAAG 2 cut(s) 782, 1052
AdeI CACNNNGTG 1 cut(s) 694
AfaI GTAC 3 cut(s) 353, 665, 939
AfiI CCNNNNNNNGG 2 cut(s) 145, 650
AflIII ACRYGT 1 cut(s) 993
AgsI TTSAA 1 cut(s) 310
AhlI ACTAGT 1 cut(s) 940
AjnI CCWGG 1 cut(s) 1149
AluBI AGCT 6 cut(s) 86, 211, 449, 706, 1064, 1213
AluI AGCT 6 cut(s) 86, 211, 449, 706, 1064, 1213
Alw26I GTCTC 1 cut(s) 1216
AlwI GGATC 2 cut(s) 203, 796
AlwNI CAGNNNCTG 1 cut(s) 755
Ama87I CYCGRG 1 cut(s) 206
Aor13HI TCCGGA 1 cut(s) 630
AoxI GGCC 5 cut(s) 157, 222, 441, 1021, 1147
ApeKI GCWGC 4 cut(s) 122, 320, 497, 1010
ApoI RAATTY 2 cut(s) 607, 1051
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 874
AsuC2I CCSGG 1 cut(s) 926
AsuHPI GGTGA 2 cut(s) 278, 380
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 1 cut(s) 874
BanI GGYRCC 1 cut(s) 507
BanII GRGCYC 1 cut(s) 207
BbvI GCAGC 4 cut(s) 134, 332, 509, 997
BccI CCATC 3 cut(s) 257, 497, 1177
BceAI ACGGC 1 cut(s) 962
BciT130I CCWGG 1 cut(s) 1151
BciVI GTATCC 1 cut(s) 1111
BclI TGATCA 3 cut(s) 7, 244, 858
BcnI CCSGG 1 cut(s) 926
BcoDI GTCTC 1 cut(s) 1216
BcuI ACTAGT 1 cut(s) 940
BfaI CTAG 5 cut(s) 294, 414, 870, 941, 1019
BfmI CTRYAG 2 cut(s) 313, 1011
BfuI GTATCC 1 cut(s) 1111
BisI GCNGC 5 cut(s) 123, 321, 498, 954, 1011
BlsI GCNGC 5 cut(s) 124, 322, 499, 955, 1012
Bme1390I CCNGG 2 cut(s) 926, 1151
Bme18I GGWCC 1 cut(s) 874
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 874
BmiI GGNNCC 3 cut(s) 509, 875, 876
BmrFI CCNGG 2 cut(s) 926, 1151
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 4 cut(s) 244, 636, 940, 997
BmuI ACTGGG 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 673
BpuMI CCSGG 1 cut(s) 926
BsaJI CCNNGG 1 cut(s) 24
BsaWI WCCGGW 1 cut(s) 630
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 650
Bse1I ACTGG 3 cut(s) 136, 148, 1094
BseAI TCCGGA 1 cut(s) 630
BseBI CCWGG 1 cut(s) 1151
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 3 cut(s) 100, 627, 958
BseLI CCNNNNNNNGG 2 cut(s) 145, 650
BseMII CTCAG 1 cut(s) 542
BseNI ACTGG 3 cut(s) 136, 148, 1094
BseRI GAGGAG 2 cut(s) 505, 960
BseXI GCAGC 4 cut(s) 134, 332, 509, 997
BseYI CCCAGC 1 cut(s) 86
BshFI GGCC 5 cut(s) 159, 224, 443, 1023, 1149
BshNI GGYRCC 1 cut(s) 507
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 2 cut(s) 631, 925
BslFI GGGAC 3 cut(s) 521, 887, 941
BslI CCNNNNNNNGG 2 cut(s) 145, 650
BsmAI GTCTC 1 cut(s) 1216
BsmFI GGGAC 3 cut(s) 521, 887, 941
BsmI GAATGC 1 cut(s) 1208
BsnI GGCC 5 cut(s) 159, 224, 443, 1023, 1149
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 207
Bsp13I TCCGGA 1 cut(s) 630
Bsp1407I TGTACA 1 cut(s) 351
Bsp143I GATC 8 cut(s) 7, 195, 244, 465, 757, 801, 858, 1162
BspACI CCGC 2 cut(s) 523, 953
BspANI GGCC 5 cut(s) 159, 224, 443, 1023, 1149
BspCNI CTCAG 1 cut(s) 543
BspEI TCCGGA 1 cut(s) 630
BspLI GGNNCC 3 cut(s) 509, 875, 876
BspMAI CTGCAG 1 cut(s) 1015
BspPI GGATC 2 cut(s) 203, 796
BspT107I GGYRCC 1 cut(s) 507
BsrGI TGTACA 1 cut(s) 351
BsrI ACTGG 3 cut(s) 136, 148, 1094
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 8 cut(s) 7, 195, 244, 465, 757, 801, 858, 1162
BssT1I CCWWGG 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 1151
Bst4CI ACNGT 4 cut(s) 314, 409, 694, 902
BstAUI TGTACA 1 cut(s) 351
BstC8I GCNNGC 2 cut(s) 790, 1119
BstDEI CTNAG 3 cut(s) 551, 673, 910
BstEII GGTNACC 1 cut(s) 386
BstF5I GGATG 3 cut(s) 100, 627, 958
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 8 cut(s) 10, 198, 247, 468, 760, 804, 861, 1165
BstMAI GTCTC 1 cut(s) 1216
BstMBI GATC 8 cut(s) 7, 195, 244, 465, 757, 801, 858, 1162
BstMWI GCNNNNNNNGC 3 cut(s) 329, 703, 1123
BstNI CCWGG 1 cut(s) 1151
BstNSI RCATGY 2 cut(s) 344, 997
BstPI GGTNACC 1 cut(s) 386
BstSCI CCNGG 2 cut(s) 924, 1149
BstSFI CTRYAG 2 cut(s) 313, 1011
BstV1I GCAGC 4 cut(s) 134, 332, 509, 997
BsuI GTATCC 1 cut(s) 1111
BsuRI GGCC 5 cut(s) 159, 224, 443, 1023, 1149
BtsCI GGATG 3 cut(s) 100, 627, 958
BtsI GCAGTG 2 cut(s) 36, 1020
BtsIMutI CAGTG 6 cut(s) 36, 405, 690, 907, 1020, 1246
Cac8I GCNNGC 2 cut(s) 790, 1119
CaiI CAGNNNCTG 1 cut(s) 755
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 874
Csp6I GTAC 3 cut(s) 352, 664, 938
CspCI CAANNNNNGTGG 2 cut(s) 354, 389
CviAII CATG 8 cut(s) 63, 192, 341, 573, 799, 974, 994, 1228
CviQI GTAC 3 cut(s) 352, 664, 938
DdeI CTNAG 3 cut(s) 551, 673, 910
DpnI GATC 8 cut(s) 9, 197, 246, 467, 759, 803, 860, 1164
DpnII GATC 8 cut(s) 7, 195, 244, 465, 757, 801, 858, 1162
DraIII CACNNNGTG 1 cut(s) 694
EciI GGCGGA 1 cut(s) 512
Eco130I CCWWGG 1 cut(s) 24
Eco147I AGGCCT 1 cut(s) 1149
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 874
Eco57I CTGAAG 2 cut(s) 782, 1052
Eco88I CYCGRG 1 cut(s) 206
Eco91I GGTNACC 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 874
EcoO65I GGTNACC 1 cut(s) 386
EcoRI GAATTC 1 cut(s) 607
EcoRII CCWGG 1 cut(s) 1149
EcoT14I CCWWGG 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 8 cut(s) 66, 195, 344, 576, 802, 977, 997, 1231
FaqI GGGAC 3 cut(s) 521, 887, 941
FatI CATG 8 cut(s) 62, 191, 340, 572, 798, 973, 993, 1227
FauNDI CATATG 1 cut(s) 118
FbaI TGATCA 3 cut(s) 7, 244, 858
Fnu4HI GCNGC 5 cut(s) 123, 321, 498, 954, 1011
FokI GGATG 3 cut(s) 107, 614, 945
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 5 cut(s) 123, 321, 498, 954, 1011
FspAI RTGCGCAY 1 cut(s) 67
FspBI CTAG 5 cut(s) 294, 414, 870, 941, 1019
FspI TGCGCA 1 cut(s) 67
GlaI GCGC 1 cut(s) 67
GluI GCNGC 5 cut(s) 123, 321, 498, 954, 1011
GsaI CCCAGC 1 cut(s) 90
HaeIII GGCC 5 cut(s) 159, 224, 443, 1023, 1149
HapII CCGG 2 cut(s) 631, 925
HhaI GCGC 1 cut(s) 68
Hin1II CATG 8 cut(s) 66, 195, 344, 576, 802, 977, 997, 1231
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HinfI GANTC 3 cut(s) 712, 1084, 1224
HpaII CCGG 2 cut(s) 631, 925
HphI GGTGA 2 cut(s) 278, 380
Hpy166II GTNNAC 2 cut(s) 742, 905
Hpy188I TCNGA 9 cut(s) 12, 249, 613, 711, 717, 762, 1137, 1198, 1221
Hpy188III TCNNGA 8 cut(s) 587, 597, 631, 681, 805, 842, 1067, 1160
Hpy8I GTNNAC 2 cut(s) 742, 905
HpyAV CCTTC 4 cut(s) 356, 433, 628, 823
HpyCH4III ACNGT 4 cut(s) 314, 409, 694, 902
HpyCH4V TGCA 8 cut(s) 122, 257, 497, 572, 814, 1013, 1057, 1117
HpyF10VI GCNNNNNNNGC 3 cut(s) 329, 703, 1123
HpyF3I CTNAG 3 cut(s) 551, 673, 910
Hsp92II CATG 8 cut(s) 66, 195, 344, 576, 802, 977, 997, 1231
HspAI GCGC 1 cut(s) 66
KflI GGGWCCC 1 cut(s) 874
Kpn2I TCCGGA 1 cut(s) 630
Ksp22I TGATCA 3 cut(s) 7, 244, 858
Kzo9I GATC 8 cut(s) 7, 195, 244, 465, 757, 801, 858, 1162
LmnI GCTCC 1 cut(s) 45
Lsp1109I GCAGC 4 cut(s) 134, 332, 509, 997
LweI GCATC 4 cut(s) 244, 636, 940, 997
MaeI CTAG 5 cut(s) 294, 414, 870, 941, 1019
MaeIII GTNAC 5 cut(s) 386, 416, 686, 767, 794
MalI GATC 8 cut(s) 9, 197, 246, 467, 759, 803, 860, 1164
MboI GATC 8 cut(s) 7, 195, 244, 465, 757, 801, 858, 1162
MboII GAAGA 4 cut(s) 25, 1045, 1082, 1148
MfeI CAATTG 2 cut(s) 240, 724
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 5 cut(s) 240, 607, 724, 1051, 1192
MlyI GAGTC 1 cut(s) 1218
MmeI TCCRAC 2 cut(s) 925, 1115
MroI TCCGGA 1 cut(s) 630
MseI TTAA 3 cut(s) 290, 432, 1140
MslI CAYNNNNRTG 1 cut(s) 992
MspI CCGG 2 cut(s) 631, 925
MspR9I CCNGG 2 cut(s) 926, 1151
MunI CAATTG 2 cut(s) 240, 724
Mva1269I GAATGC 1 cut(s) 1208
MvaI CCWGG 1 cut(s) 1151
MwoI GCNNNNNNNGC 3 cut(s) 329, 703, 1123
NciI CCSGG 1 cut(s) 926
NdeI CATATG 1 cut(s) 118
NdeII GATC 8 cut(s) 7, 195, 244, 465, 757, 801, 858, 1162
NlaIII CATG 8 cut(s) 66, 195, 344, 576, 802, 977, 997, 1231
NlaIV GGNNCC 3 cut(s) 509, 875, 876
NmuCI GTSAC 3 cut(s) 386, 416, 686
NsbI TGCGCA 1 cut(s) 67
NspI RCATGY 2 cut(s) 344, 997
PceI AGGCCT 1 cut(s) 1149
PciI ACATGT 1 cut(s) 993
PcsI WCGNNNNNNNCGW 1 cut(s) 779
PctI GAATGC 1 cut(s) 1208
PfeI GAWTC 2 cut(s) 712, 1084
PkrI GCNGC 5 cut(s) 124, 322, 499, 955, 1012
PleI GAGTC 1 cut(s) 1218
PpsI GAGTC 1 cut(s) 1218
PpuMI RGGWCCY 1 cut(s) 874
PscI ACATGT 1 cut(s) 993
Psp5II RGGWCCY 1 cut(s) 874
Psp6I CCWGG 1 cut(s) 1149
PspEI GGTNACC 1 cut(s) 386
PspFI CCCAGC 1 cut(s) 86
PspGI CCWGG 1 cut(s) 1149
PspN4I GGNNCC 3 cut(s) 509, 875, 876
PspPI GGNCC 1 cut(s) 874
PspPPI RGGWCCY 1 cut(s) 874
PstI CTGCAG 1 cut(s) 1015
PstNI CAGNNNCTG 1 cut(s) 755
RsaI GTAC 3 cut(s) 353, 665, 939
RsaNI GTAC 3 cut(s) 352, 664, 938
RseI CAYNNNNRTG 1 cut(s) 992
SaqAI TTAA 3 cut(s) 290, 432, 1140
SatI GCNGC 5 cut(s) 123, 321, 498, 954, 1011
Sau3AI GATC 8 cut(s) 7, 195, 244, 465, 757, 801, 858, 1162
Sau96I GGNCC 1 cut(s) 874
SchI GAGTC 1 cut(s) 1218
ScrFI CCNGG 2 cut(s) 926, 1151
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 4 cut(s) 244, 636, 940, 997
SfcI CTRYAG 2 cut(s) 313, 1011
SinI GGWCC 1 cut(s) 874
SmiMI CAYNNNNRTG 1 cut(s) 992
SpeI ACTAGT 1 cut(s) 940
Sse9I AATT 5 cut(s) 240, 607, 724, 1051, 1192
SseBI AGGCCT 1 cut(s) 1149
SsiI CCGC 2 cut(s) 523, 953
SspI AATATT 1 cut(s) 81
SspMI CTAG 5 cut(s) 294, 414, 870, 941, 1019
StuI AGGCCT 1 cut(s) 1149
StyD4I CCNGG 2 cut(s) 924, 1149
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 4 cut(s) 314, 409, 694, 902
TaqI TCGA 6 cut(s) 471, 773, 1068, 1082, 1165, 1176
TasI AATT 5 cut(s) 240, 607, 724, 1051, 1192
TatI WGTACW 2 cut(s) 351, 663
TauI GCSGC 1 cut(s) 956
TfiI GAWTC 2 cut(s) 712, 1084
Tru1I TTAA 3 cut(s) 290, 432, 1140
Tru9I TTAA 3 cut(s) 290, 432, 1140
TscAI CASTG 6 cut(s) 36, 412, 697, 907, 1020, 1246
TseFI GTSAC 3 cut(s) 386, 416, 686
TseI GCWGC 4 cut(s) 122, 320, 497, 1010
Tsp45I GTSAC 3 cut(s) 386, 416, 686
TspDTI ATGAA 2 cut(s) 871, 1205
TspRI CASTG 6 cut(s) 36, 412, 697, 907, 1020, 1246
VpaK11BI GGWCC 1 cut(s) 874
XapI RAATTY 2 cut(s) 607, 1051
XceI RCATGY 2 cut(s) 344, 997
XspI CTAG 5 cut(s) 294, 414, 870, 941, 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.