Rh6BG402600

Zeaxanthin epoxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012103
Physical Location & Seq
Forward (+)
62939651 .. 62940295
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG402600.1

Sequence Viewer

Length: 645 bp
ATGGGGATCCGAAAGGCATACCCTGACCTTGGGAAATGCTTGTACTTCAGCTTAGGTTCTGGAACTCACACTGTGCTATATGAGCTTCTGAACAATAGGCTGAATTGGATTTGGTATGTCCATCAACCAGAGCCTGATCTGAAGGGTAATTCAATGACCACAAAGGCAAGCAGTGACATGATCCAGGCGATGCACAAAGAAGCAGAGAAGATGTGGCTTCCCGAGTTCGTGAGACTCATCAAAGAAACAAGCCACCCTTTCATCAATGCCATATATGACAGTGAACCCTTGGAGCAAATCTATTGGGACAATGTGGTATTGGTTGGAGATGCAGCTCACCCCACAACTCCTCATGCAACAAGAAGCACTAACATGTCGGTCTTGGATGCTGCGGTGTTAGGCCAGTGCCTGAAGAAGTGGGGTGCAGAAACCTTGCAATCAGCTCTTGAAGAATATCAGTCCATTCGATTACCAGTTGTATCGAAACAACTCCTTCATGCAAGGAGAATGGGGAGGATTAAACAAGGTCTTGTTCTTCCTGATCGACAGTCTTTTGACCCCAAGAAGGCTAATCCAGAGGAGTGCCAAGAGCTTCAACAGAAACTCATGCCTTTTTTCTCTGACGTTCCTTCCATACTAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3 NAD_binding_8

Protein Analysis

214

Amino Acids

24.39

Weight (kDa)

6.65

Isoelectric Point (pI)

54.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 100 - 162 1.1e-06 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11330 AT5G11330
fragaria_vesca FvH4_2g29790 FvH4_2g29790
malus_domestica MD08G1141800.v1.1 MD15G1118300.v1.1 MD15G1335000.v1.1
prunus_persica Prupe.1G471700_v2.0.a1
pyrus_communis pycom15g10650
rosa_chinensis RchiOBHm_Chr6g0298811
rosa_laevigata RLG00000011483
rosa_multiflora Rmu_co8348659.1_g000001
rosa_roxburghii Rroxscaffold_7G00169310
rosa_rugosa Rorug06G0283000
rosa_samantha Rh6AG394700 Rh6BG402600 Rh6CG408300 Rh6DG395100
rosa_wichuraiana Rw6G034530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 392
AclWI GGATC 2 cut(s) 14, 175
AcuI CTGAAG 3 cut(s) 31, 161, 431
AdeI CACNNNGTG 1 cut(s) 73
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 29, 565
AflIII ACRYGT 1 cut(s) 372
AgsI TTSAA 3 cut(s) 153, 449, 596
AhlI ACTAGT 1 cut(s) 637
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 5 cut(s) 51, 85, 335, 443, 592
AluI AGCT 5 cut(s) 51, 85, 335, 443, 592
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 2 cut(s) 14, 175
AlwNI CAGNNNCTG 2 cut(s) 134, 409
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 1 cut(s) 400
ApeKI GCWGC 2 cut(s) 332, 389
AsuHPI GGTGA 1 cut(s) 329
AvaI CYCGRG 1 cut(s) 221
BamHI GGATCC 1 cut(s) 6
BbvI GCAGC 2 cut(s) 344, 376
BccI CCATC 1 cut(s) 129
BciT130I CCWGG 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 226
BcuI ACTAGT 1 cut(s) 637
BfaI CTAG 1 cut(s) 638
BisI GCNGC 2 cut(s) 333, 390
BlsI GCNGC 2 cut(s) 334, 391
Bme1390I CCNGG 1 cut(s) 185
BmeT110I CYCGRG 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 8
BmrFI CCNGG 1 cut(s) 185
BmsI GCATC 3 cut(s) 180, 319, 376
Bpu10I CCTNAGC 1 cut(s) 52
BsaJI CCNNGG 2 cut(s) 28, 288
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 565
Bse1I ACTGG 2 cut(s) 403, 473
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 28, 288
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 2 cut(s) 29, 565
BseNI ACTGG 2 cut(s) 403, 473
BseRI GAGGAG 2 cut(s) 339, 593
BseXI GCAGC 2 cut(s) 344, 376
BsgI GTGCAG 1 cut(s) 444
BshFI GGCC 1 cut(s) 402
BsiHKCI CYCGRG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 2 cut(s) 29, 565
BsmAI GTCTC 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 1 cut(s) 402
BsoBI CYCGRG 1 cut(s) 221
Bsp143I GATC 4 cut(s) 6, 136, 180, 541
BspACI CCGC 1 cut(s) 392
BspANI GGCC 1 cut(s) 402
BspLI GGNNCC 1 cut(s) 8
BspPI GGATC 2 cut(s) 14, 175
BsrI ACTGG 2 cut(s) 403, 473
BssECI CCNNGG 2 cut(s) 28, 288
BssMI GATC 4 cut(s) 6, 136, 180, 541
BssT1I CCWWGG 2 cut(s) 28, 288
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 3 cut(s) 73, 281, 549
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 52
BstF5I GGATG 1 cut(s) 391
BstKTI GATC 4 cut(s) 9, 139, 183, 544
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 4 cut(s) 6, 136, 180, 541
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNI CCWGG 1 cut(s) 185
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 344, 376
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuRI GGCC 1 cut(s) 402
BtgZI GCGATG 1 cut(s) 203
BtsCI GGATG 1 cut(s) 391
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 4 cut(s) 69, 178, 286, 410
Cac8I GCNNGC 1 cut(s) 169
CaiI CAGNNNCTG 2 cut(s) 134, 409
Csp6I GTAC 1 cut(s) 43
CviAII CATG 5 cut(s) 178, 353, 373, 497, 607
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 52
DpnI GATC 4 cut(s) 8, 138, 182, 543
DpnII GATC 4 cut(s) 6, 136, 180, 541
DraIII CACNNNGTG 1 cut(s) 73
Eco130I CCWWGG 2 cut(s) 28, 288
Eco57I CTGAAG 3 cut(s) 31, 161, 431
Eco88I CYCGRG 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 2 cut(s) 28, 288
ErhI CCWWGG 2 cut(s) 28, 288
FaeI CATG 5 cut(s) 181, 356, 376, 500, 610
FalI AAGNNNNNCTT 2 cut(s) 241, 273
FaqI GGGAC 1 cut(s) 320
FatI CATG 5 cut(s) 177, 352, 372, 496, 606
Fnu4HI GCNGC 2 cut(s) 333, 390
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 2 cut(s) 333, 390
FspBI CTAG 1 cut(s) 638
GluI GCNGC 2 cut(s) 333, 390
HaeIII GGCC 1 cut(s) 402
Hin1II CATG 5 cut(s) 181, 356, 376, 500, 610
HinfI GANTC 1 cut(s) 234
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 4 cut(s) 11, 90, 141, 622
Hpy188III TCNNGA 6 cut(s) 60, 221, 229, 446, 539, 575
Hpy8I GTNNAC 1 cut(s) 284
HpyAV CCTTC 4 cut(s) 136, 503, 559, 639
HpyCH4III ACNGT 3 cut(s) 73, 281, 549
HpyCH4IV ACGT 1 cut(s) 624
HpyCH4V TGCA 6 cut(s) 193, 332, 356, 425, 436, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 52
HpySE526I ACGT 1 cut(s) 624
Hsp92II CATG 5 cut(s) 181, 356, 376, 500, 610
Kzo9I GATC 4 cut(s) 6, 136, 180, 541
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 2 cut(s) 344, 376
LweI GCATC 3 cut(s) 180, 319, 376
MaeI CTAG 1 cut(s) 638
MaeII ACGT 1 cut(s) 624
MaeIII GTNAC 1 cut(s) 173
MalI GATC 4 cut(s) 8, 138, 182, 543
MboI GATC 4 cut(s) 6, 136, 180, 541
MboII GAAGA 4 cut(s) 220, 424, 461, 527
MflI RGATCY 1 cut(s) 6
MluCI AATT 2 cut(s) 103, 148
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 3 cut(s) 360, 507, 571
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 2 cut(s) 371, 638
MspR9I CCNGG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 82
NdeII GATC 4 cut(s) 6, 136, 180, 541
NlaIII CATG 5 cut(s) 181, 356, 376, 500, 610
NlaIV GGNNCC 1 cut(s) 8
NmuCI GTSAC 1 cut(s) 173
NspI RCATGY 1 cut(s) 376
PciI ACATGT 1 cut(s) 372
PkrI GCNGC 2 cut(s) 334, 391
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PscI ACATGT 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 8
PstNI CAGNNNCTG 2 cut(s) 134, 409
PsuI RGATCY 1 cut(s) 6
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 2 cut(s) 371, 638
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 2 cut(s) 333, 390
Sau3AI GATC 4 cut(s) 6, 136, 180, 541
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 1 cut(s) 185
SfaNI GCATC 3 cut(s) 180, 319, 376
SmiMI CAYNNNNRTG 2 cut(s) 371, 638
SpeI ACTAGT 1 cut(s) 637
Sse9I AATT 2 cut(s) 103, 148
SsiI CCGC 1 cut(s) 392
SspMI CTAG 1 cut(s) 638
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 2 cut(s) 28, 288
TaaI ACNGT 3 cut(s) 73, 281, 549
TaiI ACGT 1 cut(s) 627
TaqI TCGA 3 cut(s) 466, 482, 544
TaqII GACCGA 1 cut(s) 367
TasI AATT 2 cut(s) 103, 148
TatI WGTACW 1 cut(s) 42
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 4 cut(s) 76, 178, 286, 410
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 2 cut(s) 332, 389
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 250, 485
TspRI CASTG 4 cut(s) 76, 178, 286, 410
XceI RCATGY 1 cut(s) 376
XspI CTAG 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.