Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000397.1

Orthogroup ID

OG0015466

Physical Location & Seq

Genomic Coordinates Reverse (-)

69977 .. 71827

Gene Structure 1851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000397.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgggggctgggaagcctgggaagcgtgagatccaaacctcactggacggactgagggacaagaacttgatgcagctcaagaagctcaacaccgctctcttcccggttcgctacaacgacagatactacaccgacgccctcgccgccggcgacttctctaaactagcatattacagtgatatatgtgttggttcaattgcttgccggcgtgagaagaaggagggtggggttgtccgtgtgtacatcatgacactgggagttttggcaccatatcgtgggataggcattggtaaaaagctgttgaaccatgcttttgaactctgcgtcaaggaaaacatttctgaaatttacttgcacgttcagactaacaatgatgatgccataagcttctataagaaatttgggtttgaaatcacggaaactatccagaactattacacaaacatcacccctccggactgctacgttcttaccaagtatattacccaacctcagacaaagaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022402 GO:0031365 GO:0034085 GO:0034087 GO:0034212 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051276 GO:0051604 GO:0052858 GO:0061733 GO:0070601 GO:0071704 GO:0071840 GO:0071962 GO:0098813 GO:0140014 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

168

Amino Acids

19.1

Weight (kDa)

9.16

Isoelectric Point (pI)

25.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11340
fragaria_vesca	FvH4_2g29780
malus_domestica	MD15G1118400.v1.1
prunus_persica	Prupe.1G471800_v2.0.a1 Prupe.1G471800_v2.0.a1
pyrus_communis	pycom15g10660
rosa_chinensis	RchiOBHm_Chr6g0298801
rosa_laevigata	RLG00000011484
rosa_multiflora	Rmu_sc0033401.1_g000001 Rmu_ssc0000397.1_g000017
rosa_roxburghii	Rroxscaffold_7G00169320
rosa_rugosa	Rorug06G0283000
rosa_samantha	Rh6BG402400 Rh6CG408200 Rh6DG395000
rosa_wichuraiana	Rw6G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	265
AccB7I	CCANNNNNTGG	1 cut(s)	275
AccBSI	CCGCTC	1 cut(s)	95
AccIII	TCCGGA	1 cut(s)	454
AciI	CCGC	2 cut(s)	93, 144
AclWI	GGATC	1 cut(s)	25
AcsI	RAATTY	2 cut(s)	345, 398
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	4 cut(s)	195, 304, 317, 410
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	4 cut(s)	76, 85, 298, 387
AluI	AGCT	4 cut(s)	76, 85, 298, 387
AlwI	GGATC	1 cut(s)	25
Aor13HI	TCCGGA	1 cut(s)	454
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	2 cut(s)	345, 398
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	18
BcnI	CCSGG	1 cut(s)	104
BfaI	CTAG	1 cut(s)	164
BisI	GCNGC	2 cut(s)	74, 144
BlsI	GCNGC	2 cut(s)	75, 145
Bme1390I	CCNGG	2 cut(s)	18, 104
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	2 cut(s)	18, 104
BmrI	ACTGGG	1 cut(s)	263
BmsI	GCATC	2 cut(s)	60, 367
BmuI	ACTGGG	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	17
BsaWI	WCCGGW	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse118I	RCCGGY	2 cut(s)	146, 204
Bse1I	ACTGG	2 cut(s)	48, 258
BseAI	TCCGGA	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	2 cut(s)	44, 506
BseNI	ACTGG	2 cut(s)	48, 258
BseXI	GCAGC	1 cut(s)	85
BseYI	CCCAGC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	265
BsiSI	CCGG	4 cut(s)	104, 147, 205, 455
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	71
Bsp13I	TCCGGA	1 cut(s)	454
Bsp1407I	TGTACA	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	2 cut(s)	93, 144
BspCNI	CTCAG	2 cut(s)	45, 505
BspEI	TCCGGA	1 cut(s)	454
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	265
BsrBI	CCGCTC	1 cut(s)	95
BsrFI	RCCGGY	2 cut(s)	146, 204
BsrGI	TGTACA	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	48, 258
BssAI	RCCGGY	2 cut(s)	146, 204
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	1 cut(s)	30
BssNI	GRCGYC	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	135
BstAUI	TGTACA	1 cut(s)	240
BstC8I	GCNNGC	3 cut(s)	148, 202, 206
BstDEI	CTNAG	2 cut(s)	53, 492
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 82, 143
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	2 cut(s)	16, 102
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BtsIMutI	CAGTG	3 cut(s)	41, 181, 251
Cac8I	GCNNGC	3 cut(s)	148, 202, 206
CciI	TCATGA	1 cut(s)	246
Cfr10I	RCCGGY	2 cut(s)	146, 204
CseI	GACGC	2 cut(s)	143, 313
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	2 cut(s)	247, 308
CviJI	RGCY	6 cut(s)	8, 16, 76, 85, 298, 387
CviKI_1	RGCY	6 cut(s)	8, 16, 76, 85, 298, 387
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	2 cut(s)	53, 492
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	16
FaeI	CATG	2 cut(s)	250, 311
FaiI	YATR	9 cut(s)	169, 182, 184, 248, 271, 309, 383, 393, 480
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	2 cut(s)	246, 307
Fnu4HI	GCNGC	2 cut(s)	74, 144
Fsp4HI	GCNGC	2 cut(s)	74, 144
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	2 cut(s)	74, 144
GsaI	CCCAGC	1 cut(s)	12
HapII	CCGG	4 cut(s)	104, 147, 205, 455
HgaI	GACGC	2 cut(s)	143, 313
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	250, 311
HindIII	AAGCTT	1 cut(s)	385
HpaII	CCGG	4 cut(s)	104, 147, 205, 455
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	3 cut(s)	343, 363, 495
Hpy188III	TCNNGA	4 cut(s)	79, 247, 427, 455
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4IV	ACGT	2 cut(s)	357, 465
HpyCH4V	TGCA	2 cut(s)	73, 355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 82, 143
HpyF3I	CTNAG	2 cut(s)	53, 492
HpySE526I	ACGT	2 cut(s)	357, 465
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	250, 311
Kpn2I	TCCGGA	1 cut(s)	454
KroI	GCCGGC	2 cut(s)	146, 204
KroNI	GCCGGC	2 cut(s)	148, 206
Kzo9I	GATC	1 cut(s)	30
LpnPI	CCDG	9 cut(s)	3, 29, 30, 117, 160, 218, 239, 440, 468
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	2 cut(s)	60, 367
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	2 cut(s)	357, 465
MalI	GATC	1 cut(s)	32
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	1 cut(s)	30
MboII	GAAGA	2 cut(s)	91, 226
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	1 cut(s)	30
MluCI	AATT	3 cut(s)	195, 345, 398
MnlI	CCTC	6 cut(s)	48, 49, 149, 214, 462, 501
MreI	CGCCGGCG	1 cut(s)	146
MroI	TCCGGA	1 cut(s)	454
MroNI	GCCGGC	2 cut(s)	146, 204
MspI	CCGG	4 cut(s)	104, 147, 205, 455
MspR9I	CCNGG	2 cut(s)	18, 104
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	22, 82, 143
NaeI	GCCGGC	2 cut(s)	148, 206
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	1 cut(s)	30
NgoMIV	GCCGGC	2 cut(s)	146, 204
NlaIII	CATG	2 cut(s)	250, 311
NlaIV	GGNNCC	1 cut(s)	267
PagI	TCATGA	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdiI	GCCGGC	2 cut(s)	148, 206
PflMI	CCANNNNNTGG	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	75, 145
Psp6I	CCWGG	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	267
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SatI	GCNGC	2 cut(s)	74, 144
Sau3AI	GATC	1 cut(s)	30
ScrFI	CCNGG	2 cut(s)	18, 104
SetI	ASST	8 cut(s)	41, 78, 87, 300, 360, 389, 468, 493
SfaNI	GCATC	2 cut(s)	60, 367
SgrAI	CRCCGGYG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	3 cut(s)	195, 345, 398
SsiI	CCGC	2 cut(s)	93, 144
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	16, 102
TaaI	ACNGT	1 cut(s)	176
TaiI	ACGT	2 cut(s)	360, 468
TasI	AATT	3 cut(s)	195, 345, 398
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	1 cut(s)	146
TscAI	CASTG	3 cut(s)	48, 181, 258
TseI	GCWGC	1 cut(s)	73
TspGWI	ACGGA	3 cut(s)	63, 224, 431
TspRI	CASTG	3 cut(s)	48, 181, 258
Van91I	CCANNNNNTGG	1 cut(s)	275
XapI	RAATTY	2 cut(s)	345, 398
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.