Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015466

Physical Location & Seq

Genomic Coordinates Forward (+)

8502403 .. 8504958

Gene Structure 2556 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1118400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGGGCTGGGCGCGAGGTCCAAAGCTCGCTGGACGGACTGCGGGACAAGAACGTGATGCAGCTGAAGAAACTCAACACTGCCCTCTTCCCAGTCCGCTACAACGACAAGTACTACGCCGATGCCCTCGCTTCCGGCGATTTCACCAAGCTAGCATATTTCAGTGATATATGTGTTGGTGCAATTGCATGCCGGCTTGAGAAAAAGGAAAATGGAGCTGTCCGCGTGTACATCATGACATTGGGAGTTCTAGCACCATACCGTGGGCTAGGCATTGGTAAAAAACTGTTGAACCATTCTCTTGATCTGTGCGCCAAGCAAAATATTTCAGAAATATACTTGCATGTTCAGACAAACAATGAGGACGCCATAAACTTCTACAAGAAATTTGGGTTCGAAATCACGGAAACCATCCAGAATTATTACACAAACATCACCCCTCCAGACTGCTACGTTCTTACCAAGTATATTGCTCAGTCAAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022402 GO:0031365 GO:0034085 GO:0034087 GO:0034212 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051276 GO:0051604 GO:0052858 GO:0061733 GO:0070601 GO:0071704 GO:0071840 GO:0071962 GO:0098813 GO:0140014 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

163

Amino Acids

18.28

Weight (kDa)

8.94

Isoelectric Point (pI)

26.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	25 - 132	8.6e-19	Acetyltransferase (GNAT) family
Acetyltransf_10	PF13673	37 - 137	4.6e-11	Acetyltransferase (GNAT) domain
Acetyltransf_4	PF13420	55 - 142	1.1e-06	Acetyltransferase (GNAT) domain
Acetyltransf_7	PF13508	56 - 133	2e-12	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11340
fragaria_vesca	FvH4_2g29780
malus_domestica	MD15G1118400.v1.1
prunus_persica	Prupe.1G471800_v2.0.a1 Prupe.1G471800_v2.0.a1
pyrus_communis	pycom15g10660
rosa_chinensis	RchiOBHm_Chr6g0298801
rosa_laevigata	RLG00000011484
rosa_multiflora	Rmu_sc0033401.1_g000001 Rmu_ssc0000397.1_g000017
rosa_roxburghii	Rroxscaffold_7G00169320
rosa_rugosa	Rorug06G0283000
rosa_samantha	Rh6BG402400 Rh6CG408200 Rh6DG395000
rosa_wichuraiana	Rw6G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	263
AccII	CGCG	2 cut(s)	15, 225
AciI	CCGC	3 cut(s)	43, 97, 223
AcsI	RAATTY	1 cut(s)	386
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	2 cut(s)	113, 230
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	1 cut(s)	292
AluBI	AGCT	4 cut(s)	27, 64, 151, 218
AluI	AGCT	4 cut(s)	27, 64, 151, 218
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	386
AspLEI	GCGC	2 cut(s)	15, 314
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	136, 427
AsuII	TTCGAA	1 cut(s)	396
AsuNHI	GCTAGC	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	419
BfaI	CTAG	3 cut(s)	152, 251, 269
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
BmcAI	AGTACT	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	2 cut(s)	48, 112
BmtI	GCTAGC	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse118I	RCCGGY	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	8
Bsh1236I	CGCG	2 cut(s)	15, 225
BsiSI	CCGG	2 cut(s)	135, 193
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	59
Bsp119I	TTCGAA	1 cut(s)	396
Bsp1407I	TGTACA	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	3 cut(s)	43, 97, 223
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	2 cut(s)	15, 225
BspHI	TCATGA	1 cut(s)	234
BspOI	GCTAGC	1 cut(s)	155
BspT104I	TTCGAA	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	192
BsrGI	TGTACA	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	1 cut(s)	304
BssNI	GRCGYC	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	263, 288
Bst6I	CTCTTC	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	366
BstAUI	TGTACA	1 cut(s)	228
BstBI	TTCGAA	1 cut(s)	396
BstC8I	GCNNGC	4 cut(s)	29, 153, 190, 194
BstDEI	CTNAG	1 cut(s)	474
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	411
BstFNI	CGCG	2 cut(s)	15, 225
BstHHI	GCGC	2 cut(s)	15, 314
BstKTI	GATC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	304
BstNSI	RCATGY	2 cut(s)	192, 347
BstUI	CGCG	2 cut(s)	15, 225
BstV1I	GCAGC	1 cut(s)	73
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	411
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	78, 169
Cac8I	GCNNGC	4 cut(s)	29, 153, 190, 194
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	2 cut(s)	15, 314
Cfr10I	RCCGGY	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	19
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	2 cut(s)	112, 229
CviAII	CATG	3 cut(s)	189, 235, 344
CviJI	RGCY	7 cut(s)	8, 27, 64, 151, 196, 218, 268
CviKI_1	RGCY	7 cut(s)	8, 27, 64, 151, 196, 218, 268
CviQI	GTAC	2 cut(s)	112, 229
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	86
FaeI	CATG	3 cut(s)	192, 238, 347
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	3 cut(s)	188, 234, 343
FauI	CCCGC	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	62
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	1 cut(s)	62
FspBI	CTAG	3 cut(s)	152, 251, 269
GlaI	GCGC	2 cut(s)	14, 313
GluI	GCNGC	1 cut(s)	62
GsaI	CCCAGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	426
HapII	CCGG	2 cut(s)	135, 193
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	2 cut(s)	15, 314
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	3 cut(s)	192, 238, 347
Hin6I	GCGC	2 cut(s)	13, 312
HinP1I	GCGC	2 cut(s)	13, 312
HpaII	CCGG	2 cut(s)	135, 193
HphI	GGTGA	2 cut(s)	136, 427
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	331, 351
Hpy188III	TCNNGA	4 cut(s)	235, 302, 415, 443
Hpy8I	GTNNAC	1 cut(s)	229
HpyCH4III	ACNGT	2 cut(s)	263, 288
HpyCH4IV	ACGT	2 cut(s)	54, 453
HpyCH4V	TGCA	4 cut(s)	61, 182, 188, 343
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	2 cut(s)	54, 453
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	3 cut(s)	192, 238, 347
HspAI	GCGC	2 cut(s)	13, 312
KroI	GCCGGC	1 cut(s)	192
KroNI	GCCGGC	1 cut(s)	194
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	6 cut(s)	17, 105, 148, 206, 428, 456
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	2 cut(s)	48, 112
MaeI	CTAG	3 cut(s)	152, 251, 269
MaeII	ACGT	2 cut(s)	54, 453
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	2 cut(s)	79, 79
MfeI	CAATTG	1 cut(s)	183
MluCI	AATT	3 cut(s)	183, 386, 418
MnlI	CCTC	5 cut(s)	10, 95, 137, 355, 450
MroNI	GCCGGC	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	2 cut(s)	135, 193
MunI	CAATTG	1 cut(s)	183
MvnI	CGCG	2 cut(s)	15, 225
NaeI	GCCGGC	1 cut(s)	194
NdeII	GATC	1 cut(s)	304
NgoMIV	GCCGGC	1 cut(s)	192
NheI	GCTAGC	1 cut(s)	151
NlaIII	CATG	3 cut(s)	192, 238, 347
NspI	RCATGY	2 cut(s)	192, 347
NspV	TTCGAA	1 cut(s)	396
PaeI	GCATGC	1 cut(s)	192
PagI	TCATGA	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdiI	GCCGGC	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	263
PkrI	GCNGC	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	8
PspPI	GGNCC	1 cut(s)	19
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	2 cut(s)	113, 230
RsaNI	GTAC	2 cut(s)	112, 229
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	1 cut(s)	19
ScaI	AGTACT	1 cut(s)	113
SetI	ASST	7 cut(s)	21, 29, 57, 66, 153, 220, 456
SfaNI	GCATC	2 cut(s)	48, 112
SfuI	TTCGAA	1 cut(s)	396
SinI	GGWCC	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	3 cut(s)	183, 386, 418
SsiI	CCGC	3 cut(s)	43, 97, 223
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	3 cut(s)	152, 251, 269
TaaI	ACNGT	2 cut(s)	263, 288
TaiI	ACGT	2 cut(s)	57, 456
TaqI	TCGA	1 cut(s)	396
TasI	AATT	3 cut(s)	183, 386, 418
TatI	WGTACW	2 cut(s)	111, 228
TscAI	CASTG	2 cut(s)	85, 169
TseI	GCWGC	1 cut(s)	61
TspGWI	ACGGA	2 cut(s)	51, 419
TspRI	CASTG	2 cut(s)	85, 169
Van91I	CCANNNNNTGG	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	1 cut(s)	386
XceI	RCATGY	2 cut(s)	192, 347
XspI	CTAG	3 cut(s)	152, 251, 269
ZrmI	AGTACT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.