Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015466

Physical Location & Seq

Genomic Coordinates Reverse (-)

60065611 .. 60068036

Gene Structure 2426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26826

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTTAATGGGCCTCAGTCTGATCGTTTTAGAAGAAGGGTCCAGAGAGTTGGCCTGCACCGACCCCTACTTAAACCCAAAGATACAATTGTCTGTAGAGCAAGTCCTTCTCTCCCCTGCAAAACCCTCCCTCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATAAGAAAGAAGAAGAAATGGGGGCTGGGAAGCGTGAGATCCAAACCTCACTGGACGGACTGAGGGACAAGAACTTGATGCAGCTCAAGAAGCTCAACACCGCTCTCTTCCCGGTTCGCTACAACGACAGATACTACGCCGACGCCCTCGCCGCCGGCGACTTCTCTAAACTAGCATATTACAGTGATATATGTGTTGGTTCAATTGCTTGCCGGCTTGAGAAGAAGGAGGGTGGGGTTGTCCGTGTGTACATCATGACACTGGGAGTTTTGGCACCATATCGTGGGATAGGCATTGGTAAAAAGCTGTTGAACCATGCTTTTGCACTCTGCGCAAAGGAAAACATTTCTGAAATTTACTTGCACGTTCAGACTAACAATGATGATGCCATAAGCTTCTATAAGAAATTTGGGTTTGAAATCACGGAAACTATCCAGAACTATTACACAAACATCACCCCTCCGGACTGCTACGTTCTTACCAAGTATATTACCCAACCTCAGACAAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022402 GO:0031365 GO:0034085 GO:0034087 GO:0034212 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051276 GO:0051604 GO:0052858 GO:0061733 GO:0070601 GO:0071704 GO:0071840 GO:0071962 GO:0098813 GO:0140014 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

227

Amino Acids

25.42

Weight (kDa)

8.46

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	90 - 195	1.3e-17	Acetyltransferase (GNAT) family
Acetyltransf_10	PF13673	109 - 200	1.2e-09	Acetyltransferase (GNAT) domain
Acetyltransf_7	PF13508	116 - 196	3.7e-12	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11340
fragaria_vesca	FvH4_2g29780
malus_domestica	MD15G1118400.v1.1
prunus_persica	Prupe.1G471800_v2.0.a1 Prupe.1G471800_v2.0.a1
pyrus_communis	pycom15g10660
rosa_chinensis	RchiOBHm_Chr6g0298801
rosa_laevigata	RLG00000011484
rosa_multiflora	Rmu_sc0033401.1_g000001 Rmu_ssc0000397.1_g000017
rosa_roxburghii	Rroxscaffold_7G00169320
rosa_rugosa	Rorug06G0283000
rosa_samantha	Rh6BG402400 Rh6CG408200 Rh6DG395000
rosa_wichuraiana	Rw6G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	502
AccB1I	GGYRCC	1 cut(s)	442
AccB7I	CCANNNNNTGG	1 cut(s)	452
AccBSI	CCGCTC	1 cut(s)	272
AccIII	TCCGGA	1 cut(s)	631
AciI	CCGC	2 cut(s)	270, 321
AclWI	GGATC	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	522, 575
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	452
AgsI	TTSAA	3 cut(s)	372, 481, 587
AluBI	AGCT	4 cut(s)	253, 262, 475, 564
AluI	AGCT	4 cut(s)	253, 262, 475, 564
AlwI	GGATC	1 cut(s)	202
Aor13HI	TCCGGA	1 cut(s)	631
AoxI	GGCC	2 cut(s)	10, 51
ApeKI	GCWGC	1 cut(s)	250
ApoI	RAATTY	2 cut(s)	522, 575
AspLEI	GCGC	1 cut(s)	503
AspS9I	GGNCC	2 cut(s)	10, 39
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	616
AvaII	GGWCC	1 cut(s)	39
BaeI	ACNNNNGTAYC	2 cut(s)	74, 107
BanI	GGYRCC	1 cut(s)	442
BbvI	GCAGC	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	281
BfaI	CTAG	1 cut(s)	341
BfmI	CTRYAG	1 cut(s)	93
BisI	GCNGC	2 cut(s)	251, 321
BlsI	GCNGC	2 cut(s)	252, 322
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	10, 39
BmiI	GGNNCC	2 cut(s)	40, 444
BmrFI	CCNGG	1 cut(s)	281
BmrI	ACTGGG	1 cut(s)	440
BmsI	GCATC	2 cut(s)	237, 544
BmuI	ACTGGG	1 cut(s)	440
BpuEI	CTTGAG	2 cut(s)	239, 407
BpuMI	CCSGG	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	312
BsaWI	WCCGGW	1 cut(s)	631
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse118I	RCCGGY	2 cut(s)	323, 381
Bse1I	ACTGG	2 cut(s)	225, 435
BseAI	TCCGGA	1 cut(s)	631
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMII	CTCAG	3 cut(s)	28, 221, 683
BseNI	ACTGG	2 cut(s)	225, 435
BseXI	GCAGC	1 cut(s)	262
BseYI	CCCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	40
BshFI	GGCC	2 cut(s)	12, 53
BshNI	GGYRCC	1 cut(s)	442
BsiSI	CCGG	4 cut(s)	281, 324, 382, 632
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	12, 53
Bsp13I	TCCGGA	1 cut(s)	631
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	2 cut(s)	21, 207
BspACI	CCGC	2 cut(s)	270, 321
BspANI	GGCC	2 cut(s)	12, 53
BspCNI	CTCAG	3 cut(s)	27, 222, 682
BspEI	TCCGGA	1 cut(s)	631
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	2 cut(s)	40, 444
BspPI	GGATC	1 cut(s)	202
BspT107I	GGYRCC	1 cut(s)	442
BsrBI	CCGCTC	1 cut(s)	272
BsrFI	RCCGGY	2 cut(s)	323, 381
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	225, 435
BssAI	RCCGGY	2 cut(s)	323, 381
BssMI	GATC	2 cut(s)	21, 207
BssNI	GRCGYC	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	1 cut(s)	281
BstACI	GRCGYC	1 cut(s)	312
BstAUI	TGTACA	1 cut(s)	417
BstC8I	GCNNGC	4 cut(s)	55, 325, 379, 383
BstDEI	CTNAG	3 cut(s)	14, 230, 669
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	2 cut(s)	24, 210
BstMBI	GATC	2 cut(s)	21, 207
BstMWI	GCNNNNNNNGC	3 cut(s)	259, 320, 500
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	207
BstXI	CCANNNNNNTGG	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	12, 53
BtsIMutI	CAGTG	3 cut(s)	218, 358, 428
Cac8I	GCNNGC	4 cut(s)	55, 325, 379, 383
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	1 cut(s)	503
Cfr10I	RCCGGY	2 cut(s)	323, 381
Cfr13I	GGNCC	2 cut(s)	10, 39
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	2 cut(s)	424, 485
CviJI	RGCY	8 cut(s)	12, 53, 194, 253, 262, 385, 475, 564
CviKI_1	RGCY	8 cut(s)	12, 53, 194, 253, 262, 385, 475, 564
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	3 cut(s)	14, 230, 669
DpnI	GATC	2 cut(s)	23, 209
DpnII	GATC	2 cut(s)	21, 207
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	39
FaeI	CATG	2 cut(s)	427, 488
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	2 cut(s)	423, 484
Fnu4HI	GCNGC	2 cut(s)	251, 321
Fsp4HI	GCNGC	2 cut(s)	251, 321
FspBI	CTAG	1 cut(s)	341
FspI	TGCGCA	1 cut(s)	502
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	2 cut(s)	251, 321
GsaI	CCCAGC	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	12, 53
HapII	CCGG	4 cut(s)	281, 324, 382, 632
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	1 cut(s)	503
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	2 cut(s)	427, 488
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HindIII	AAGCTT	1 cut(s)	562
HpaII	CCGG	4 cut(s)	281, 324, 382, 632
HphI	GGTGA	1 cut(s)	616
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	4 cut(s)	21, 520, 540, 672
Hpy188III	TCNNGA	5 cut(s)	42, 256, 424, 604, 632
Hpy8I	GTNNAC	1 cut(s)	418
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	3 cut(s)	29, 116, 388
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	2 cut(s)	534, 642
HpyCH4V	TGCA	5 cut(s)	57, 119, 250, 494, 532
HpyF10VI	GCNNNNNNNGC	3 cut(s)	259, 320, 500
HpyF3I	CTNAG	3 cut(s)	14, 230, 669
HpySE526I	ACGT	2 cut(s)	534, 642
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	2 cut(s)	427, 488
HspAI	GCGC	1 cut(s)	501
Kpn2I	TCCGGA	1 cut(s)	631
KroI	GCCGGC	2 cut(s)	323, 381
KroNI	GCCGGC	2 cut(s)	325, 383
Kzo9I	GATC	2 cut(s)	21, 207
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	2 cut(s)	237, 544
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	2 cut(s)	534, 642
MalI	GATC	2 cut(s)	23, 209
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	2 cut(s)	21, 207
MboII	GAAGA	5 cut(s)	44, 191, 194, 268, 403
MfeI	CAATTG	2 cut(s)	86, 372
MflI	RGATCY	1 cut(s)	207
MluCI	AATT	4 cut(s)	86, 372, 522, 575
MnlI	CCTC	9 cut(s)	23, 136, 140, 225, 226, 326, 391, 639, 678
MreI	CGCCGGCG	1 cut(s)	323
MroI	TCCGGA	1 cut(s)	631
MroNI	GCCGGC	2 cut(s)	323, 381
MseI	TTAA	2 cut(s)	5, 71
MspI	CCGG	4 cut(s)	281, 324, 382, 632
MspR9I	CCNGG	1 cut(s)	281
MunI	CAATTG	2 cut(s)	86, 372
MwoI	GCNNNNNNNGC	3 cut(s)	259, 320, 500
NaeI	GCCGGC	2 cut(s)	325, 383
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	2 cut(s)	21, 207
NgoMIV	GCCGGC	2 cut(s)	323, 381
NlaIII	CATG	2 cut(s)	427, 488
NlaIV	GGNNCC	2 cut(s)	40, 444
NsbI	TGCGCA	1 cut(s)	502
PagI	TCATGA	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PdiI	GCCGGC	2 cut(s)	325, 383
PflMI	CCANNNNNTGG	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	252, 322
PspFI	CCCAGC	1 cut(s)	194
PspN4I	GGNNCC	2 cut(s)	40, 444
PspPI	GGNCC	2 cut(s)	10, 39
PsuI	RGATCY	1 cut(s)	207
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SaqAI	TTAA	2 cut(s)	5, 71
SatI	GCNGC	2 cut(s)	251, 321
Sau3AI	GATC	2 cut(s)	21, 207
Sau96I	GGNCC	2 cut(s)	10, 39
ScrFI	CCNGG	1 cut(s)	281
SetI	ASST	8 cut(s)	218, 255, 264, 477, 537, 566, 645, 670
SfaNI	GCATC	2 cut(s)	237, 544
SfcI	CTRYAG	1 cut(s)	93
SgrAI	CRCCGGYG	1 cut(s)	323
SinI	GGWCC	1 cut(s)	39
SmlI	CTYRAG	2 cut(s)	254, 386
SmoI	CTYRAG	2 cut(s)	254, 386
Sse9I	AATT	4 cut(s)	86, 372, 522, 575
SsiI	CCGC	2 cut(s)	270, 321
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	2 cut(s)	537, 645
TasI	AATT	4 cut(s)	86, 372, 522, 575
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	1 cut(s)	323
Tru1I	TTAA	2 cut(s)	5, 71
Tru9I	TTAA	2 cut(s)	5, 71
TscAI	CASTG	3 cut(s)	225, 358, 435
TseI	GCWGC	1 cut(s)	250
TspGWI	ACGGA	3 cut(s)	240, 401, 608
TspRI	CASTG	3 cut(s)	225, 358, 435
Van91I	CCANNNNNTGG	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	39
XapI	RAATTY	2 cut(s)	522, 575
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.