Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015466

Physical Location & Seq

Genomic Coordinates Reverse (-)

23029228 .. 23031570

Gene Structure 2343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29780.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGGGCTGGGAAGCGGGAGATCCAAACCTCACTGGACGGACTGAGGGAAAAGAACTTGATGCAGCTCAAGAAGCTCAACACTGCTCTCTTCCCCGTTCGCTACAACGACAAGTACTACGCCGACGCTCTCGCCGCCGGTGATTTCTCCAAACTTGCATATTTCAGTGATATATGTGTTGGTGCAATTGCATGCCGGCTTGAGAAGAAGGAAGGTGGGGCTGTCCGCGTGTACATCATGACATTGGGAGTTTTGGCACCATATCGTGGGATAGGCATTGGTAAAATGCTGTTGAACCACGTTTTTGAACTCAGCACCAAGCAAAACATTTCCCAAATTTACCTGCACGTTCAGACTAACAATGATGATGCCATAAGCTTCTATAAGAAATTTGGGTTTGAAATCACAGAAACTATCCAGAACTATTACACAAACATCACCCCTCCGGACTGCTACGTGCTTACCAAGAATATTACCCAACCTCAGACAAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022402 GO:0031365 GO:0034085 GO:0034087 GO:0034212 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051276 GO:0051604 GO:0052858 GO:0061733 GO:0070601 GO:0071704 GO:0071840 GO:0071962 GO:0098813 GO:0140014 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

166

Amino Acids

18.64

Weight (kDa)

9.15

Isoelectric Point (pI)

30.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	52 - 92	9.3e-08	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11340
fragaria_vesca	FvH4_2g29780
malus_domestica	MD15G1118400.v1.1
prunus_persica	Prupe.1G471800_v2.0.a1 Prupe.1G471800_v2.0.a1
pyrus_communis	pycom15g10660
rosa_chinensis	RchiOBHm_Chr6g0298801
rosa_laevigata	RLG00000011484
rosa_multiflora	Rmu_sc0033401.1_g000001 Rmu_ssc0000397.1_g000017
rosa_roxburghii	Rroxscaffold_7G00169320
rosa_rugosa	Rorug06G0283000
rosa_samantha	Rh6BG402400 Rh6CG408200 Rh6DG395000
rosa_wichuraiana	Rw6G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	256
AccB7I	CCANNNNNTGG	1 cut(s)	266
AccII	CGCG	1 cut(s)	228
AccIII	TCCGGA	1 cut(s)	445
AciI	CCGC	3 cut(s)	16, 135, 226
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	2 cut(s)	336, 389
AfaI	GTAC	2 cut(s)	116, 233
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	3 cut(s)	295, 308, 401
AluBI	AGCT	3 cut(s)	67, 76, 378
AluI	AGCT	3 cut(s)	67, 76, 378
AlwI	GGATC	1 cut(s)	16
Aor13HI	TCCGGA	1 cut(s)	445
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	2 cut(s)	336, 389
AsuHPI	GGTGA	2 cut(s)	152, 430
BanI	GGYRCC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	76
BfuAI	ACCTGC	1 cut(s)	351
BisI	GCNGC	2 cut(s)	65, 135
BlsI	GCNGC	2 cut(s)	66, 136
BmcAI	AGTACT	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	258
BmsI	GCATC	2 cut(s)	51, 358
BpuEI	CTTGAG	2 cut(s)	53, 221
BsaAI	YACGTR	1 cut(s)	457
BsaWI	WCCGGW	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse118I	RCCGGY	2 cut(s)	137, 195
Bse1I	ACTGG	1 cut(s)	39
BseAI	TCCGGA	1 cut(s)	445
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	3 cut(s)	35, 325, 497
BseNI	ACTGG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	76
BseYI	CCCAGC	1 cut(s)	8
BsgI	GTGCAG	1 cut(s)	329
Bsh1236I	CGCG	1 cut(s)	228
BshNI	GGYRCC	1 cut(s)	256
BsiSI	CCGG	3 cut(s)	138, 196, 446
BslI	CCNNNNNNNGG	1 cut(s)	266
Bsp13I	TCCGGA	1 cut(s)	445
Bsp1407I	TGTACA	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	21
BspACI	CCGC	3 cut(s)	16, 135, 226
BspCNI	CTCAG	3 cut(s)	36, 324, 496
BspEI	TCCGGA	1 cut(s)	445
BspFNI	CGCG	1 cut(s)	228
BspHI	TCATGA	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	258
BspMI	ACCTGC	1 cut(s)	351
BspPI	GGATC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	256
BsrFI	RCCGGY	2 cut(s)	137, 195
BsrGI	TGTACA	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	39
BssAI	RCCGGY	2 cut(s)	137, 195
BssMI	GATC	1 cut(s)	21
Bst6I	CTCTTC	1 cut(s)	95
BstAUI	TGTACA	1 cut(s)	231
BstBAI	YACGTR	1 cut(s)	457
BstC8I	GCNNGC	2 cut(s)	193, 197
BstDEI	CTNAG	3 cut(s)	44, 311, 483
BstFNI	CGCG	1 cut(s)	228
BstKTI	GATC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 134
BstNSI	RCATGY	1 cut(s)	195
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	3 cut(s)	32, 81, 172
BveI	ACCTGC	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	193, 197
CciI	TCATGA	1 cut(s)	237
Cfr10I	RCCGGY	2 cut(s)	137, 195
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	115, 232
CviAII	CATG	2 cut(s)	192, 238
CviJI	RGCY	6 cut(s)	8, 67, 76, 199, 221, 378
CviKI_1	RGCY	6 cut(s)	8, 67, 76, 199, 221, 378
CviQI	GTAC	2 cut(s)	115, 232
DdeI	CTNAG	3 cut(s)	44, 311, 483
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
FaeI	CATG	2 cut(s)	195, 241
FaiI	YATR	8 cut(s)	160, 173, 175, 193, 239, 262, 374, 384
FatI	CATG	2 cut(s)	191, 237
FauI	CCCGC	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	65, 135
Fsp4HI	GCNGC	2 cut(s)	65, 135
GluI	GCNGC	2 cut(s)	65, 135
GsaI	CCCAGC	1 cut(s)	12
HapII	CCGG	3 cut(s)	138, 196, 446
HgaI	GACGC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	195, 241
HindIII	AAGCTT	1 cut(s)	376
HpaII	CCGG	3 cut(s)	138, 196, 446
HphI	GGTGA	2 cut(s)	152, 430
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	354, 486
Hpy188III	TCNNGA	4 cut(s)	70, 238, 418, 446
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	202, 206
HpyCH4IV	ACGT	3 cut(s)	300, 348, 456
HpyCH4V	TGCA	5 cut(s)	64, 158, 185, 191, 346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 134
HpyF3I	CTNAG	3 cut(s)	44, 311, 483
HpySE526I	ACGT	3 cut(s)	300, 348, 456
Hsp92II	CATG	2 cut(s)	195, 241
Kpn2I	TCCGGA	1 cut(s)	445
KroI	GCCGGC	1 cut(s)	195
KroNI	GCCGGC	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	21
LpnPI	CCDG	6 cut(s)	20, 151, 209, 356, 431, 459
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	2 cut(s)	51, 358
MaeII	ACGT	3 cut(s)	300, 348, 456
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	2 cut(s)	82, 217
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	1 cut(s)	21
MluCI	AATT	3 cut(s)	186, 336, 389
MnlI	CCTC	4 cut(s)	39, 40, 453, 492
MroI	TCCGGA	1 cut(s)	445
MroNI	GCCGGC	1 cut(s)	195
MspI	CCGG	3 cut(s)	138, 196, 446
MunI	CAATTG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	73, 134
NaeI	GCCGGC	1 cut(s)	197
NdeII	GATC	1 cut(s)	21
NgoMIV	GCCGGC	1 cut(s)	195
NlaIII	CATG	2 cut(s)	195, 241
NlaIV	GGNNCC	1 cut(s)	258
NspI	RCATGY	1 cut(s)	195
PaeI	GCATGC	1 cut(s)	195
PagI	TCATGA	1 cut(s)	237
PdiI	GCCGGC	1 cut(s)	197
PflMI	CCANNNNNTGG	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	66, 136
Ppu21I	YACGTR	1 cut(s)	457
PspFI	CCCAGC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	21
RsaI	GTAC	2 cut(s)	116, 233
RsaNI	GTAC	2 cut(s)	115, 232
SatI	GCNGC	2 cut(s)	65, 135
Sau3AI	GATC	1 cut(s)	21
ScaI	AGTACT	1 cut(s)	116
SfaNI	GCATC	2 cut(s)	51, 358
SgrAI	CRCCGGYG	1 cut(s)	137
SmlI	CTYRAG	2 cut(s)	68, 200
SmoI	CTYRAG	2 cut(s)	68, 200
SphI	GCATGC	1 cut(s)	195
Sse9I	AATT	3 cut(s)	186, 336, 389
SsiI	CCGC	3 cut(s)	16, 135, 226
SspI	AATATT	1 cut(s)	472
TaiI	ACGT	3 cut(s)	303, 351, 459
TasI	AATT	3 cut(s)	186, 336, 389
TatI	WGTACW	2 cut(s)	114, 231
TauI	GCSGC	1 cut(s)	137
TscAI	CASTG	3 cut(s)	39, 88, 172
TseI	GCWGC	1 cut(s)	64
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	3 cut(s)	39, 88, 172
Van91I	CCANNNNNTGG	1 cut(s)	266
XapI	RAATTY	2 cut(s)	336, 389
XceI	RCATGY	1 cut(s)	195
ZrmI	AGTACT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.