AT5G11550

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017188
Physical Location & Seq
Reverse (-)
3707961 .. 3709403
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11550.1

Sequence Viewer

Length: 945 bp
ATGATGAAAGCAAACCAGAAACCGAAACCCCACGCGCCACCGCGTCCTCTCTTCTCCTGTGGCTTCTTCCGCCGCTGCACACAATCCGTCCTCAGCCCAACCTCTCCTCACCAGCAGCAACCTCGCCGTAAAGCCACCACCACTTCCTCCTCATCTTCCTCCTCCTCAACCTCAACTTCCCAAAGCTTCACTCAATGGCGCTTTCCTCATCATCTTGATCAAACTCCATCCACCGCTCCTCCTCCTCCTCATCCACCTCCTCCACCACCGCCTCTTCCGGTCACCACCACTCTCCAAGAAACCTTCCAGATCGCAGAGCTTCACCTCACATCCGTCTCTGAATCCGACAAGCTCCTCGCTCTACAGCTACTCGAGCGGGTAGTCGTACCTGACCCGCCATCTGATCCGACTTGTCCACCGGGTCTCATGCGAGGTCTCGTCTCTTGCCTTCGTAGCAACAACAAGATCGTAACGGCAAAATACGTCACCAAGATCCTACTCGCTCTCTGCCTCGCCGAAGGAAACCGCCACGTGGCGGTCGAGGCTGGAGCCGCACGAGCGGTGGTGGAAACAGCGGCAGGACTAGAGATCTCAGCGGTGGAGCGAGCCTTAGCTGCTCTTGAGCTAATGTGTACAACGGCAGAAGGAGCGGCGGAGGTTCGCGCTCACGCGATGACGGTGCCGGCGATGGTAGCGGTGATGGCGAGATTGGCTGGTAGAGGGAGAGAATACGCCATAAGCATCCTTTCCGTGGTCTACGGGAAAGGCGGCGAAGGAGGGGATTCCGGCGAGGAAATCGCGGTGGCGCCGGCGGAAGAAGTGGCTCGGGCGGTGGCGTTGGCGCTGGAAGGAGAGTGTACGGCGAGAGGAAAAAGAAAAGGGGCCCAACTATTGAAGACACTAGAGGAATATGGACGGTTGGATCTGAGTCAGAATGGGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

33.3

Weight (kDa)

8.69

Isoelectric Point (pI)

56.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 139 - 302 2e-21 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017188)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11550
fragaria_vesca FvH4_2g35860
malus_domestica MD15G1095700.v1.1
prunus_persica Prupe.1G450700_v2.0.a1
pyrus_communis pycom15g08800
rosa_chinensis RchiOBHm_Chr6g0305961
rosa_laevigata RLG00000010842
rosa_multiflora Rmu_sc0001809.1_g000055
rosa_rugosa Rorug06G0345700
rosa_samantha Rh6AG457500 Rh6BG443600 Rh6DG458000
rosa_wichuraiana Rw6G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 679, 805
AccBSI CCGCTC 4 cut(s) 236, 376, 560, 650
AccI GTMKAC 1 cut(s) 756
AccII CGCG 5 cut(s) 35, 43, 663, 671, 800
AclWI GGATC 3 cut(s) 398, 487, 930
AcvI CACGTG 1 cut(s) 532
AcyI GRCGYC 1 cut(s) 806
AfaI GTAC 3 cut(s) 387, 634, 859
AfiI CCNNNNNNNGG 3 cut(s) 532, 535, 751
AgsI TTSAA 1 cut(s) 895
AluBI AGCT 6 cut(s) 186, 319, 352, 367, 614, 625
AluI AGCT 6 cut(s) 186, 319, 352, 367, 614, 625
Alw26I GTCTC 4 cut(s) 340, 428, 440, 445
AlwI GGATC 3 cut(s) 398, 487, 930
Ama87I CYCGRG 2 cut(s) 371, 825
AoxI GGCC 1 cut(s) 882
ApaI GGGCCC 1 cut(s) 886
ApeKI GCWGC 3 cut(s) 75, 115, 614
AspLEI GCGC 5 cut(s) 37, 201, 665, 808, 844
AspS9I GGNCC 3 cut(s) 882, 883, 939
AsuC2I CCSGG 1 cut(s) 420
AsuHPI GGTGA 5 cut(s) 101, 274, 314, 478, 709
AvaI CYCGRG 2 cut(s) 371, 825
AvaII GGWCC 1 cut(s) 939
BaeGI GKGCMC 1 cut(s) 886
BanI GGYRCC 2 cut(s) 679, 805
BanII GRGCYC 1 cut(s) 886
BauI CACGAG 1 cut(s) 555
BbrPI CACGTG 1 cut(s) 532
BbsI GAAGAC 1 cut(s) 902
BbvCI CCTCAGC 1 cut(s) 92
BbvI GCAGC 3 cut(s) 62, 127, 601
BccI CCATC 4 cut(s) 235, 406, 682, 694
BceAI ACGGC 4 cut(s) 111, 489, 654, 876
BcgI CGANNNNNNTGC 4 cut(s) 104, 138, 661, 695
BclI TGATCA 1 cut(s) 217
BcnI CCSGG 1 cut(s) 420
BcoDI GTCTC 4 cut(s) 340, 428, 440, 445
BfaI CTAG 2 cut(s) 584, 902
BfmI CTRYAG 1 cut(s) 362
BfoI RGCGCY 3 cut(s) 202, 809, 845
BglII AGATCT 1 cut(s) 588
BisI GCNGC 8 cut(s) 73, 76, 116, 552, 576, 615, 651, 769
BlsI GCNGC 8 cut(s) 74, 77, 117, 553, 577, 616, 652, 770
Bme1390I CCNGG 1 cut(s) 420
Bme18I GGWCC 1 cut(s) 939
BmeT110I CYCGRG 2 cut(s) 371, 825
BmgT120I GGNCC 3 cut(s) 882, 883, 939
BmiI GGNNCC 6 cut(s) 550, 681, 807, 883, 884, 940
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 1 cut(s) 750
BpiI GAAGAC 1 cut(s) 902
BpmI CTGGAG 1 cut(s) 567
Bpu10I CCTNAGC 2 cut(s) 92, 610
BpuEI CTTGAG 1 cut(s) 641
BpuMI CCSGG 1 cut(s) 420
BsaAI YACGTR 1 cut(s) 532
BsaHI GRCGYC 1 cut(s) 806
BsaI GGTCTC 2 cut(s) 428, 440
BsaJI CCNNGG 1 cut(s) 750
BsaWI WCCGGW 1 cut(s) 277
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 3 cut(s) 532, 535, 751
Bse118I RCCGGY 2 cut(s) 682, 808
BseDI CCNNGG 1 cut(s) 750
BseGI GGATG 4 cut(s) 227, 250, 329, 741
BseLI CCNNNNNNNGG 3 cut(s) 532, 535, 751
BseMII CTCAG 3 cut(s) 106, 606, 917
BseSI GKGCMC 1 cut(s) 886
BseXI GCAGC 3 cut(s) 62, 127, 601
BsgI GTGCAG 1 cut(s) 61
Bsh1236I CGCG 5 cut(s) 35, 43, 663, 671, 800
Bsh1285I CGRYCG 1 cut(s) 540
BshFI GGCC 1 cut(s) 884
BshNI GGYRCC 2 cut(s) 679, 805
BsiEI CGRYCG 1 cut(s) 540
BsiHKCI CYCGRG 2 cut(s) 371, 825
BsiSI CCGG 5 cut(s) 278, 419, 683, 786, 809
BslI CCNNNNNNNGG 3 cut(s) 532, 535, 751
BsmAI GTCTC 4 cut(s) 340, 428, 440, 445
BsmBI CGTCTC 2 cut(s) 340, 445
BsnI GGCC 1 cut(s) 884
Bso31I GGTCTC 2 cut(s) 428, 440
BsoBI CYCGRG 2 cut(s) 371, 825
Bsp120I GGGCCC 1 cut(s) 882
Bsp1286I GDGCHC 1 cut(s) 886
Bsp1407I TGTACA 1 cut(s) 632
Bsp143I GATC 7 cut(s) 217, 309, 403, 465, 492, 588, 922
BspANI GGCC 1 cut(s) 884
BspCNI CTCAG 3 cut(s) 105, 605, 918
BspFNI CGCG 5 cut(s) 35, 43, 663, 671, 800
BspLI GGNNCC 6 cut(s) 550, 681, 807, 883, 884, 940
BspPI GGATC 3 cut(s) 398, 487, 930
BspT107I GGYRCC 2 cut(s) 679, 805
BspTNI GGTCTC 2 cut(s) 428, 440
BsrBI CCGCTC 4 cut(s) 236, 376, 560, 650
BsrFI RCCGGY 2 cut(s) 682, 808
BsrGI TGTACA 1 cut(s) 632
BssAI RCCGGY 2 cut(s) 682, 808
BssECI CCNNGG 1 cut(s) 750
BssMI GATC 7 cut(s) 217, 309, 403, 465, 492, 588, 922
BssNI GRCGYC 1 cut(s) 806
BssSI CACGAG 1 cut(s) 555
Bst2BI CACGAG 1 cut(s) 555
Bst4CI ACNGT 2 cut(s) 679, 918
Bst6I CTCTTC 2 cut(s) 56, 279
BstACI GRCGYC 1 cut(s) 806
BstAUI TGTACA 1 cut(s) 632
BstBAI YACGTR 1 cut(s) 532
BstC8I GCNNGC 3 cut(s) 606, 684, 810
BstDEI CTNAG 4 cut(s) 92, 592, 610, 926
BstDSI CCRYGG 1 cut(s) 750
BstEII GGTNACC 1 cut(s) 280
BstF5I GGATG 4 cut(s) 227, 250, 329, 741
BstFNI CGCG 5 cut(s) 35, 43, 663, 671, 800
BstH2I RGCGCY 3 cut(s) 202, 809, 845
BstHHI GCGC 5 cut(s) 37, 201, 665, 808, 844
BstKTI GATC 7 cut(s) 220, 312, 406, 468, 495, 591, 925
BstMAI GTCTC 4 cut(s) 340, 428, 440, 445
BstMBI GATC 7 cut(s) 217, 309, 403, 465, 492, 588, 922
BstMCI CGRYCG 1 cut(s) 540
BstPI GGTNACC 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 418
BstSFI CTRYAG 1 cut(s) 362
BstSLI GKGCMC 1 cut(s) 886
BstUI CGCG 5 cut(s) 35, 43, 663, 671, 800
BstV1I GCAGC 3 cut(s) 62, 127, 601
BstV2I GAAGAC 1 cut(s) 902
BstX2I RGATCY 3 cut(s) 492, 588, 922
BstYI RGATCY 3 cut(s) 492, 588, 922
BsuRI GGCC 1 cut(s) 884
BtgI CCRYGG 1 cut(s) 750
BtgZI GCGATG 2 cut(s) 686, 701
BtsCI GGATG 4 cut(s) 227, 250, 329, 741
Cac8I GCNNGC 3 cut(s) 606, 684, 810
CfoI GCGC 5 cut(s) 37, 201, 665, 808, 844
Cfr10I RCCGGY 2 cut(s) 682, 808
Cfr13I GGNCC 3 cut(s) 882, 883, 939
CseI GACGC 1 cut(s) 32
Csp6I GTAC 3 cut(s) 386, 633, 858
CviAII CATG 1 cut(s) 427
CviQI GTAC 3 cut(s) 386, 633, 858
DdeI CTNAG 4 cut(s) 92, 592, 610, 926
DinI GGCGCC 1 cut(s) 807
DpnI GATC 7 cut(s) 219, 311, 405, 467, 494, 590, 924
DpnII GATC 7 cut(s) 217, 309, 403, 465, 492, 588, 922
Eam1104I CTCTTC 2 cut(s) 56, 279
EarI CTCTTC 2 cut(s) 56, 279
EciI GGCGGA 3 cut(s) 59, 668, 827
Eco24I GRGCYC 1 cut(s) 886
Eco31I GGTCTC 2 cut(s) 428, 440
Eco47I GGWCC 1 cut(s) 939
Eco72I CACGTG 1 cut(s) 532
Eco88I CYCGRG 2 cut(s) 371, 825
Eco91I GGTNACC 1 cut(s) 280
EcoO109I RGGNCCY 2 cut(s) 882, 939
EcoO65I GGTNACC 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 886
EgeI GGCGCC 1 cut(s) 807
EheI GGCGCC 1 cut(s) 807
Esp3I CGTCTC 2 cut(s) 340, 445
FaeI CATG 1 cut(s) 430
FaiI YATR 3 cut(s) 428, 737, 912
FatI CATG 1 cut(s) 426
FauI CCCGC 2 cut(s) 369, 402
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 1 cut(s) 756
Fnu4HI GCNGC 8 cut(s) 73, 76, 116, 552, 576, 615, 651, 769
FokI GGATG 4 cut(s) 214, 237, 316, 728
FriOI GRGCYC 1 cut(s) 886
Fsp4HI GCNGC 8 cut(s) 73, 76, 116, 552, 576, 615, 651, 769
FspBI CTAG 2 cut(s) 584, 902
GlaI GCGC 5 cut(s) 36, 200, 664, 807, 843
GluI GCNGC 8 cut(s) 73, 76, 116, 552, 576, 615, 651, 769
GsuI CTGGAG 1 cut(s) 567
HaeII RGCGCY 3 cut(s) 202, 809, 845
HaeIII GGCC 1 cut(s) 884
HapII CCGG 5 cut(s) 278, 419, 683, 786, 809
HgaI GACGC 1 cut(s) 32
HhaI GCGC 5 cut(s) 37, 201, 665, 808, 844
Hin1I GRCGYC 1 cut(s) 806
Hin1II CATG 1 cut(s) 430
Hin6I GCGC 5 cut(s) 35, 199, 663, 806, 842
HinP1I GCGC 5 cut(s) 35, 199, 663, 806, 842
HindIII AAGCTT 1 cut(s) 184
HinfI GANTC 3 cut(s) 341, 782, 928
HpaII CCGG 5 cut(s) 278, 419, 683, 786, 809
HphI GGTGA 5 cut(s) 101, 274, 314, 478, 709
Hpy166II GTNNAC 4 cut(s) 416, 633, 757, 858
Hpy188I TCNGA 6 cut(s) 340, 346, 403, 408, 927, 933
Hpy188III TCNNGA 3 cut(s) 215, 307, 620
Hpy8I GTNNAC 4 cut(s) 416, 633, 757, 858
HpyAV CCTTC 6 cut(s) 313, 458, 512, 638, 767, 842
HpyCH4III ACNGT 2 cut(s) 679, 918
HpyCH4IV ACGT 2 cut(s) 483, 531
HpyCH4V TGCA 1 cut(s) 78
HpyF3I CTNAG 4 cut(s) 92, 592, 610, 926
HpySE526I ACGT 2 cut(s) 483, 531
Hsp92I GRCGYC 1 cut(s) 806
Hsp92II CATG 1 cut(s) 430
HspAI GCGC 5 cut(s) 35, 199, 663, 806, 842
KasI GGCGCC 1 cut(s) 805
KroI GCCGGC 2 cut(s) 682, 808
KroNI GCCGGC 2 cut(s) 684, 810
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 7 cut(s) 217, 309, 403, 465, 492, 588, 922
LmnI GCTCC 5 cut(s) 241, 357, 548, 601, 647
Lsp1109I GCAGC 3 cut(s) 62, 127, 601
LweI GCATC 1 cut(s) 750
MaeI CTAG 2 cut(s) 584, 902
MaeII ACGT 2 cut(s) 483, 531
MaeIII GTNAC 3 cut(s) 280, 469, 484
MalI GATC 7 cut(s) 219, 311, 405, 467, 494, 590, 924
MbiI CCGCTC 4 cut(s) 236, 376, 560, 650
MboI GATC 7 cut(s) 217, 309, 403, 465, 492, 588, 922
MboII GAAGA 6 cut(s) 43, 58, 147, 266, 827, 907
MflI RGATCY 3 cut(s) 492, 588, 922
MhlI GDGCHC 1 cut(s) 886
Mly113I GGCGCC 1 cut(s) 806
MlyI GAGTC 1 cut(s) 937
MmeI TCCRAC 3 cut(s) 369, 431, 900
MreI CGCCGGCG 1 cut(s) 808
MroNI GCCGGC 2 cut(s) 682, 808
MspA1I CMGCKG 3 cut(s) 75, 575, 596
MspI CCGG 5 cut(s) 278, 419, 683, 786, 809
MspR9I CCNGG 1 cut(s) 420
MvnI CGCG 5 cut(s) 35, 43, 663, 671, 800
NaeI GCCGGC 2 cut(s) 684, 810
NarI GGCGCC 1 cut(s) 806
NciI CCSGG 1 cut(s) 420
NdeII GATC 7 cut(s) 217, 309, 403, 465, 492, 588, 922
NgoMIV GCCGGC 2 cut(s) 682, 808
NlaIII CATG 1 cut(s) 430
NlaIV GGNNCC 6 cut(s) 550, 681, 807, 883, 884, 940
NmuCI GTSAC 2 cut(s) 280, 484
PaeR7I CTCGAG 1 cut(s) 371
PcsI WCGNNNNNNNCGW 2 cut(s) 537, 683
PdiI GCCGGC 2 cut(s) 684, 810
PfeI GAWTC 2 cut(s) 341, 782
PkrI GCNGC 8 cut(s) 74, 77, 117, 553, 577, 616, 652, 770
PleI GAGTC 1 cut(s) 936
PluTI GGCGCC 1 cut(s) 809
PmaCI CACGTG 1 cut(s) 532
PmlI CACGTG 1 cut(s) 532
PpsI GAGTC 1 cut(s) 936
Ppu21I YACGTR 1 cut(s) 532
PpuMI RGGWCCY 1 cut(s) 939
Psp5II RGGWCCY 1 cut(s) 939
PspCI CACGTG 1 cut(s) 532
PspEI GGTNACC 1 cut(s) 280
PspN4I GGNNCC 6 cut(s) 550, 681, 807, 883, 884, 940
PspOMI GGGCCC 1 cut(s) 882
PspPI GGNCC 3 cut(s) 882, 883, 939
PspPPI RGGWCCY 1 cut(s) 939
PspXI VCTCGAGB 1 cut(s) 371
PsuI RGATCY 3 cut(s) 492, 588, 922
RsaI GTAC 3 cut(s) 387, 634, 859
RsaNI GTAC 3 cut(s) 386, 633, 858
SatI GCNGC 8 cut(s) 73, 76, 116, 552, 576, 615, 651, 769
Sau3AI GATC 7 cut(s) 217, 309, 403, 465, 492, 588, 922
Sau96I GGNCC 3 cut(s) 882, 883, 939
SchI GAGTC 1 cut(s) 937
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 1 cut(s) 886
SfaNI GCATC 1 cut(s) 750
SfcI CTRYAG 1 cut(s) 362
SfoI GGCGCC 1 cut(s) 807
Sfr274I CTCGAG 1 cut(s) 371
SgrAI CRCCGGYG 1 cut(s) 808
SinI GGWCC 1 cut(s) 939
SlaI CTCGAG 1 cut(s) 371
SmlI CTYRAG 2 cut(s) 371, 620
SmoI CTYRAG 2 cut(s) 371, 620
SspDI GGCGCC 1 cut(s) 805
SspMI CTAG 2 cut(s) 584, 902
StyD4I CCNGG 1 cut(s) 418
TaaI ACNGT 2 cut(s) 679, 918
TaiI ACGT 2 cut(s) 486, 534
TaqI TCGA 2 cut(s) 372, 540
TatI WGTACW 1 cut(s) 632
TauI GCSGC 5 cut(s) 75, 554, 578, 653, 771
TfiI GAWTC 2 cut(s) 341, 782
TseFI GTSAC 2 cut(s) 280, 484
TseI GCWGC 3 cut(s) 75, 115, 614
Tsp45I GTSAC 2 cut(s) 280, 484
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 3 cut(s) 76, 322, 739
VpaK11BI GGWCC 1 cut(s) 939
XhoI CTCGAG 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 756
XspI CTAG 2 cut(s) 584, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.