Rw6G039910

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0017188
Physical Location & Seq
Reverse (-)
63762576 .. 63763585
1010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G039910.1

Sequence Viewer

Length: 951 bp
ATGAGAACCCAGCAGCCTAAGCTTAAGACCCAGTTTTTCTCTTGTGGATTCTTCGGCCACTGTACCGGAACAGTCCTCAGCCCCACCACGCCTCATCCTCCAACTCTCCCTTTCTCATCCACCGATCCATTTCCACCTTCGTTGTCAATTCCCGCTCCTTCGACACAATCCGACCCCCTAACCCACCACCAGTCGAAGCCCGACTCCGAATCATCTTCCTCCTCAACCTCACAGAGCTTCACCCAGTGGAAATTCCCTCTCCCTGAGTCACCCATTCTCTCCCACACACAACCTGGATCCGACCAGGATTTTGACGCTGTGGCCATATTTCAGTCCAGCCCAGCACCGCCGCCGCCGCCGCCGCCGCAGCCCATGTCCTCCACCGGCCTCCAAGAGCTCTTCCATGCAGCAGAGCTCCAACTCAGCGTCGGGTCATTTCCGGAGCAGCTCGCAGCACTCCAGCTCCTGGAACGCTCTCTGGTCCCCTACCCACCATCCGACCCGGAGTGCCCGCCCGAATTGATGCGCGGGTTGGTGCGAAATTTGAAAAACAAAGCTGGGGCAAAACCGGCAACGAAAGTGTTGTTGGCGCTCTGTTTGGCGGAGGCTAACCGCCACGTGGCGGTTGAGGCCGGGGCAGCGTCTGCGGTGTTAATGTGCACTGTGGCGGAAGGGGCGGCGGAGGTGAAGTCCCACGCGCTGGCGGTGCCGGTGATGGTGATGATGATGGGCAGGACGTCGGCTCGGGGGAAGGAATACGCAATAGGGGTGTTGGCGGTTATATACGGTGGCGCATCTGAAGATGAGACCGCGGAAGCGGTTTCGGCAGCTCCGGCGGAGGAGGTGGCCCGTGCAGTGGAGTTGGCGTTGAAAGGGGATTGTAGTGGTAGGGGAAGGAGGAAAGGGGCCCAATTATTGAAGGCGCTTCAACCAGAAGAGAAAGAGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

33.35

Weight (kDa)

5.78

Isoelectric Point (pI)

65.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 218 - 312 4.9e-09 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017188)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11550
fragaria_vesca FvH4_2g35860
malus_domestica MD15G1095700.v1.1
prunus_persica Prupe.1G450700_v2.0.a1
pyrus_communis pycom15g08800
rosa_chinensis RchiOBHm_Chr6g0305961
rosa_laevigata RLG00000010842
rosa_multiflora Rmu_sc0001809.1_g000055
rosa_rugosa Rorug06G0345700
rosa_samantha Rh6AG457500 Rh6BG443600 Rh6DG458000
rosa_wichuraiana Rw6G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 740
AccB1I GGYRCC 1 cut(s) 706
AccB7I CCANNNNNTGG 2 cut(s) 466, 700
AccBSI CCGCTC 1 cut(s) 155
AccII CGCG 3 cut(s) 528, 698, 812
AccIII TCCGGA 1 cut(s) 439
AclWI GGATC 3 cut(s) 119, 291, 304
AcoI YGGCCR 2 cut(s) 55, 321
AcsI RAATTY 2 cut(s) 251, 541
AcuI CTGAAG 1 cut(s) 819
AcvI CACGTG 1 cut(s) 619
AcyI GRCGYC 1 cut(s) 737
AdeI CACNNNGTG 1 cut(s) 246
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 5 cut(s) 466, 619, 622, 700, 856
AflII CTTAAG 1 cut(s) 23
AgsI TTSAA 4 cut(s) 547, 871, 919, 929
AjnI CCWGG 3 cut(s) 292, 303, 465
AjuI GAANNNNNNNTTGG 2 cut(s) 569, 601
AluBI AGCT 8 cut(s) 22, 237, 397, 415, 448, 463, 557, 830
AluI AGCT 8 cut(s) 22, 237, 397, 415, 448, 463, 557, 830
Alw21I GWGCWC 3 cut(s) 399, 417, 662
Alw26I GTCTC 2 cut(s) 800, 938
Alw44I GTGCAC 1 cut(s) 658
AlwI GGATC 3 cut(s) 119, 291, 304
AlwNI CAGNNNCTG 2 cut(s) 466, 644
Ama87I CYCGRG 1 cut(s) 744
Aor13HI TCCGGA 1 cut(s) 439
AoxI GGCC 6 cut(s) 55, 321, 385, 630, 846, 906
ApaI GGGCCC 1 cut(s) 910
ApaLI GTGCAC 1 cut(s) 658
ApeKI GCWGC 7 cut(s) 13, 367, 407, 445, 452, 638, 827
ApoI RAATTY 2 cut(s) 251, 541
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
AspLEI GCGC 5 cut(s) 528, 592, 700, 794, 925
AspS9I GGNCC 4 cut(s) 481, 847, 906, 907
AsuC2I CCSGG 2 cut(s) 503, 634
AsuHPI GGTGA 5 cut(s) 232, 261, 697, 724, 730
AvaI CYCGRG 1 cut(s) 744
AvaII GGWCC 1 cut(s) 481
BaeGI GKGCMC 3 cut(s) 512, 662, 910
BalI TGGCCA 1 cut(s) 323
BamHI GGATCC 1 cut(s) 296
BanI GGYRCC 1 cut(s) 706
BanII GRGCYC 3 cut(s) 399, 417, 910
BbrPI CACGTG 1 cut(s) 619
Bbv12I GWGCWC 3 cut(s) 399, 417, 662
BbvCI CCTCAGC 1 cut(s) 77
BbvI GCAGC 7 cut(s) 25, 379, 419, 457, 464, 650, 839
BccI CCATC 3 cut(s) 502, 709, 721
BciT130I CCWGG 3 cut(s) 294, 305, 467
BcnI CCSGG 2 cut(s) 503, 634
BcoDI GTCTC 2 cut(s) 800, 938
BfoI RGCGCY 2 cut(s) 593, 926
BfrI CTTAAG 1 cut(s) 23
Bme1390I CCNGG 5 cut(s) 294, 305, 467, 503, 634
Bme18I GGWCC 1 cut(s) 481
BmeT110I CYCGRG 1 cut(s) 744
BmgT120I GGNCC 4 cut(s) 481, 847, 906, 907
BmiI GGNNCC 5 cut(s) 298, 483, 708, 907, 908
BmrFI CCNGG 5 cut(s) 294, 305, 467, 503, 634
BmrI ACTGGG 2 cut(s) 25, 238
BmsI GCATC 2 cut(s) 513, 803
BmuI ACTGGG 2 cut(s) 25, 238
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 2 cut(s) 18, 77
BpuMI CCSGG 2 cut(s) 503, 634
BsaAI YACGTR 1 cut(s) 619
BsaHI GRCGYC 1 cut(s) 737
BsaI GGTCTC 2 cut(s) 800, 938
BsaJI CCNNGG 2 cut(s) 633, 810
BsaWI WCCGGW 2 cut(s) 65, 439
BsaXI ACNNNNNCTCC 6 cut(s) 447, 477, 674, 704, 851, 881
Bsc4I CCNNNNNNNGG 5 cut(s) 466, 619, 622, 700, 856
Bse118I RCCGGY 3 cut(s) 383, 568, 709
Bse1I ACTGG 3 cut(s) 31, 190, 244
BseAI TCCGGA 1 cut(s) 439
BseBI CCWGG 3 cut(s) 294, 305, 467
BseDI CCNNGG 2 cut(s) 633, 810
BseGI GGATG 3 cut(s) 94, 116, 494
BseLI CCNNNNNNNGG 5 cut(s) 466, 619, 622, 700, 856
BseMII CTCAG 3 cut(s) 91, 255, 436
BseNI ACTGG 3 cut(s) 31, 190, 244
BseRI GAGGAG 2 cut(s) 211, 854
BseSI GKGCMC 3 cut(s) 512, 662, 910
BseXI GCAGC 7 cut(s) 25, 379, 419, 457, 464, 650, 839
BseYI CCCAGC 3 cut(s) 9, 340, 557
BsgI GTGCAG 1 cut(s) 873
Bsh1236I CGCG 3 cut(s) 528, 698, 812
BshFI GGCC 6 cut(s) 57, 323, 387, 632, 848, 908
BshNI GGYRCC 1 cut(s) 706
BsiHKAI GWGCWC 3 cut(s) 399, 417, 662
BsiHKCI CYCGRG 1 cut(s) 744
BsiSI CCGG 8 cut(s) 66, 384, 440, 503, 569, 633, 710, 833
BslFI GGGAC 2 cut(s) 467, 676
BslI CCNNNNNNNGG 5 cut(s) 466, 619, 622, 700, 856
BsmAI GTCTC 2 cut(s) 800, 938
BsmFI GGGAC 2 cut(s) 467, 676
BsnI GGCC 6 cut(s) 57, 323, 387, 632, 848, 908
Bso31I GGTCTC 2 cut(s) 800, 938
BsoBI CYCGRG 1 cut(s) 744
Bsp120I GGGCCC 1 cut(s) 906
Bsp1286I GDGCHC 5 cut(s) 399, 417, 512, 662, 910
Bsp13I TCCGGA 1 cut(s) 439
Bsp143I GATC 2 cut(s) 124, 296
BspANI GGCC 6 cut(s) 57, 323, 387, 632, 848, 908
BspCNI CTCAG 3 cut(s) 90, 256, 435
BspEI TCCGGA 1 cut(s) 439
BspFNI CGCG 3 cut(s) 528, 698, 812
BspLI GGNNCC 5 cut(s) 298, 483, 708, 907, 908
BspPI GGATC 3 cut(s) 119, 291, 304
BspQI GCTCTTC 1 cut(s) 404
BspT107I GGYRCC 1 cut(s) 706
BspTI CTTAAG 1 cut(s) 23
BspTNI GGTCTC 2 cut(s) 800, 938
BsrBI CCGCTC 1 cut(s) 155
BsrFI RCCGGY 3 cut(s) 383, 568, 709
BsrI ACTGG 3 cut(s) 31, 190, 244
BssAI RCCGGY 3 cut(s) 383, 568, 709
BssECI CCNNGG 2 cut(s) 633, 810
BssMI GATC 2 cut(s) 124, 296
BssNI GRCGYC 1 cut(s) 737
Bst2UI CCWGG 3 cut(s) 294, 305, 467
Bst4CI ACNGT 4 cut(s) 62, 73, 664, 788
Bst6I CTCTTC 2 cut(s) 404, 930
BstACI GRCGYC 1 cut(s) 737
BstAFI CTTAAG 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 644
BstBAI YACGTR 1 cut(s) 619
BstC8I GCNNGC 3 cut(s) 450, 512, 702
BstDEI CTNAG 4 cut(s) 18, 77, 264, 422
BstDSI CCRYGG 1 cut(s) 810
BstF5I GGATG 3 cut(s) 94, 116, 494
BstFNI CGCG 3 cut(s) 528, 698, 812
BstH2I RGCGCY 2 cut(s) 593, 926
BstHHI GCGC 5 cut(s) 528, 592, 700, 794, 925
BstKTI GATC 2 cut(s) 127, 299
BstMAI GTCTC 2 cut(s) 800, 938
BstMBI GATC 2 cut(s) 124, 296
BstNI CCWGG 3 cut(s) 294, 305, 467
BstSCI CCNGG 5 cut(s) 292, 303, 465, 501, 632
BstSLI GKGCMC 3 cut(s) 512, 662, 910
BstUI CGCG 3 cut(s) 528, 698, 812
BstV1I GCAGC 7 cut(s) 25, 379, 419, 457, 464, 650, 839
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BsuRI GGCC 6 cut(s) 57, 323, 387, 632, 848, 908
BtgI CCRYGG 1 cut(s) 810
BtsCI GGATG 3 cut(s) 94, 116, 494
BtsI GCAGTG 1 cut(s) 861
BtsIMutI CAGTG 4 cut(s) 58, 251, 660, 861
Cac8I GCNNGC 3 cut(s) 450, 512, 702
CaiI CAGNNNCTG 2 cut(s) 466, 644
CfoI GCGC 5 cut(s) 528, 592, 700, 794, 925
Cfr10I RCCGGY 3 cut(s) 383, 568, 709
Cfr13I GGNCC 4 cut(s) 481, 847, 906, 907
Cfr42I CCGCGG 1 cut(s) 813
CseI GACGC 3 cut(s) 323, 415, 630
Csp6I GTAC 1 cut(s) 63
CspCI CAANNNNNGTGG 2 cut(s) 123, 158
CviAII CATG 2 cut(s) 373, 404
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 4 cut(s) 18, 77, 264, 422
DpnI GATC 2 cut(s) 126, 298
DpnII GATC 2 cut(s) 124, 296
DraIII CACNNNGTG 1 cut(s) 246
EaeI YGGCCR 2 cut(s) 55, 321
Eam1104I CTCTTC 2 cut(s) 404, 930
EarI CTCTTC 2 cut(s) 404, 930
EciI GGCGGA 4 cut(s) 617, 683, 695, 851
Ecl136II GAGCTC 2 cut(s) 397, 415
Eco24I GRGCYC 3 cut(s) 399, 417, 910
Eco31I GGTCTC 2 cut(s) 800, 938
Eco47I GGWCC 1 cut(s) 481
Eco53kI GAGCTC 2 cut(s) 397, 415
Eco57I CTGAAG 1 cut(s) 819
Eco72I CACGTG 1 cut(s) 619
Eco88I CYCGRG 1 cut(s) 744
EcoICRI GAGCTC 2 cut(s) 397, 415
EcoO109I RGGNCCY 1 cut(s) 906
EcoRII CCWGG 3 cut(s) 292, 303, 465
EcoT38I GRGCYC 3 cut(s) 399, 417, 910
FaeI CATG 2 cut(s) 376, 407
FaiI YATR 5 cut(s) 326, 374, 405, 782, 784
FaqI GGGAC 2 cut(s) 467, 676
FatI CATG 2 cut(s) 372, 403
FauI CCCGC 3 cut(s) 160, 519, 521
FokI GGATG 3 cut(s) 81, 103, 481
FriOI GRGCYC 3 cut(s) 399, 417, 910
GlaI GCGC 5 cut(s) 527, 591, 699, 793, 924
GsaI CCCAGC 3 cut(s) 13, 344, 561
GsuI CTGGAG 1 cut(s) 443
HaeII RGCGCY 2 cut(s) 593, 926
HaeIII GGCC 6 cut(s) 57, 323, 387, 632, 848, 908
HapII CCGG 8 cut(s) 66, 384, 440, 503, 569, 633, 710, 833
HgaI GACGC 3 cut(s) 323, 415, 630
HhaI GCGC 5 cut(s) 528, 592, 700, 794, 925
Hin1I GRCGYC 1 cut(s) 737
Hin1II CATG 2 cut(s) 376, 407
Hin6I GCGC 5 cut(s) 526, 590, 698, 792, 923
HinP1I GCGC 5 cut(s) 526, 590, 698, 792, 923
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 4 cut(s) 48, 203, 209, 266
HpaII CCGG 8 cut(s) 66, 384, 440, 503, 569, 633, 710, 833
HphI GGTGA 5 cut(s) 232, 261, 697, 724, 730
Hpy166II GTNNAC 1 cut(s) 660
Hpy188I TCNGA 5 cut(s) 172, 208, 301, 499, 799
Hpy188III TCNNGA 1 cut(s) 440
Hpy8I GTNNAC 1 cut(s) 660
Hpy99I CGWCG 2 cut(s) 431, 742
HpyAV CCTTC 6 cut(s) 147, 168, 665, 745, 888, 913
HpyCH4III ACNGT 4 cut(s) 62, 73, 664, 788
HpyCH4IV ACGT 2 cut(s) 618, 737
HpyCH4V TGCA 3 cut(s) 407, 660, 854
HpyF3I CTNAG 4 cut(s) 18, 77, 264, 422
HpySE526I ACGT 2 cut(s) 618, 737
Hsp92I GRCGYC 1 cut(s) 737
Hsp92II CATG 2 cut(s) 376, 407
HspAI GCGC 5 cut(s) 526, 590, 698, 792, 923
Kpn2I TCCGGA 1 cut(s) 439
KspI CCGCGG 1 cut(s) 813
Kzo9I GATC 2 cut(s) 124, 296
LguI GCTCTTC 1 cut(s) 404
LmnI GCTCC 5 cut(s) 160, 420, 442, 468, 835
Lsp1109I GCAGC 7 cut(s) 25, 379, 419, 457, 464, 650, 839
LweI GCATC 2 cut(s) 513, 803
MaeII ACGT 2 cut(s) 618, 737
MaeIII GTNAC 1 cut(s) 267
MalI GATC 2 cut(s) 126, 298
MbiI CCGCTC 1 cut(s) 155
MboI GATC 2 cut(s) 124, 296
MboII GAAGA 5 cut(s) 43, 207, 391, 812, 947
MflI RGATCY 1 cut(s) 296
MhlI GDGCHC 5 cut(s) 399, 417, 512, 662, 910
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 5 cut(s) 147, 251, 518, 541, 911
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 2 cut(s) 197, 275
MmeI TCCRAC 5 cut(s) 125, 195, 324, 442, 522
Mox20I TGGCCA 1 cut(s) 323
MroI TCCGGA 1 cut(s) 439
MscI TGGCCA 1 cut(s) 323
MseI TTAA 2 cut(s) 24, 653
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 812
MspCI CTTAAG 1 cut(s) 23
MspI CCGG 8 cut(s) 66, 384, 440, 503, 569, 633, 710, 833
MspR9I CCNGG 5 cut(s) 294, 305, 467, 503, 634
MvaI CCWGG 3 cut(s) 294, 305, 467
MvnI CGCG 3 cut(s) 528, 698, 812
NciI CCSGG 2 cut(s) 503, 634
NdeII GATC 2 cut(s) 124, 296
NlaIII CATG 2 cut(s) 376, 407
NlaIV GGNNCC 5 cut(s) 298, 483, 708, 907, 908
NmuCI GTSAC 1 cut(s) 267
PciSI GCTCTTC 1 cut(s) 404
PfeI GAWTC 2 cut(s) 48, 209
PflMI CCANNNNNTGG 2 cut(s) 466, 700
PfoI TCCNGGA 1 cut(s) 465
PleI GAGTC 2 cut(s) 197, 274
PmaCI CACGTG 1 cut(s) 619
PmlI CACGTG 1 cut(s) 619
PpsI GAGTC 2 cut(s) 197, 274
Ppu21I YACGTR 1 cut(s) 619
Psp124BI GAGCTC 2 cut(s) 399, 417
Psp6I CCWGG 3 cut(s) 292, 303, 465
PspCI CACGTG 1 cut(s) 619
PspFI CCCAGC 3 cut(s) 9, 340, 557
PspGI CCWGG 3 cut(s) 292, 303, 465
PspN4I GGNNCC 5 cut(s) 298, 483, 708, 907, 908
PspOMI GGGCCC 1 cut(s) 906
PspPI GGNCC 4 cut(s) 481, 847, 906, 907
PstNI CAGNNNCTG 2 cut(s) 466, 644
PsuI RGATCY 1 cut(s) 296
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SacI GAGCTC 2 cut(s) 399, 417
SacII CCGCGG 1 cut(s) 813
SapI GCTCTTC 1 cut(s) 404
SaqAI TTAA 2 cut(s) 24, 653
Sau3AI GATC 2 cut(s) 124, 296
Sau96I GGNCC 4 cut(s) 481, 847, 906, 907
SchI GAGTC 2 cut(s) 197, 275
ScrFI CCNGG 5 cut(s) 294, 305, 467, 503, 634
SduI GDGCHC 5 cut(s) 399, 417, 512, 662, 910
SfaNI GCATC 2 cut(s) 513, 803
Sfr303I CCGCGG 1 cut(s) 813
SgrBI CCGCGG 1 cut(s) 813
SinI GGWCC 1 cut(s) 481
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 5 cut(s) 147, 251, 518, 541, 911
SstI GAGCTC 2 cut(s) 399, 417
StyD4I CCNGG 5 cut(s) 292, 303, 465, 501, 632
TaaI ACNGT 4 cut(s) 62, 73, 664, 788
TaiI ACGT 2 cut(s) 621, 740
TaqI TCGA 2 cut(s) 161, 194
TasI AATT 5 cut(s) 147, 251, 518, 541, 911
TauI GCSGC 7 cut(s) 352, 355, 358, 361, 364, 367, 680
TfiI GAWTC 2 cut(s) 48, 209
Tru1I TTAA 2 cut(s) 24, 653
Tru9I TTAA 2 cut(s) 24, 653
TscAI CASTG 4 cut(s) 65, 251, 667, 861
TseFI GTSAC 1 cut(s) 267
TseI GCWGC 7 cut(s) 13, 367, 407, 445, 452, 638, 827
Tsp45I GTSAC 1 cut(s) 267
TspRI CASTG 4 cut(s) 65, 251, 667, 861
Van91I CCANNNNNTGG 2 cut(s) 466, 700
Vha464I CTTAAG 1 cut(s) 23
VneI GTGCAC 1 cut(s) 658
VpaK11BI GGWCC 1 cut(s) 481
XapI RAATTY 2 cut(s) 251, 541
XcmI CCANNNNNNNNNTGG 1 cut(s) 290
ZraI GACGTC 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.