MD15G1095700.v1.1

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0017188
Physical Location & Seq
Forward (+)
6666236 .. 6667228
993 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1095700.v1.1.491

Sequence Viewer

Length: 993 bp
ATGAAAACTCAGCACCCAAAGCTCAAAACCCATCTCTTCTCCTGCGGCTTCTTCCGCCACTGCACCCGCACCGTCCTCAGCCCCACAACCCCTCATCCTCCGCCGCTCCCTTTCTCCTCCTCCGACCCACTGCCACCTTCACTCTCATTAGATTCATCACCTCCTACTCCTCAGCCGCCCGACCCGTCAACCCACCACCACTACCCCTCCAAACCCAACTCCGCCTCCTCTTCCTCCTCCACTTCCCAAAGCTTCACCCAGTGGAAATTCGATCTCCCGGACTCCCCCATCCTCCCTTACTCACAACCCGAACCCGACAGAAAGCCCGAACCCACATCAAAACCGCCGCCGCCTCCGCCGCAACCCATTTCCTCCACTAACCTCCAGGAGCTCTTCCATGCAGCGGAGCTCCAGCTCAGCATCGGGTCATACCCGGAGCAGATCGCGGCGCTTCACCTTTTAGAACGCTCACTTGTTCCTTACCCGCCACCAGACCCGGTTTGCCCTCCCGAATTAATGCGCGGGGTAGTAAGAAATTTAAAAAACAAGGCGGCGGCAAAACCGGCAACGAAAATTTTGTTGGCGCTTTGTCTGGCGGAGGGAAACCGTCACGTGGCGGTGGAGTCCGGGGCGGCTGCGGCGGTGGTGGAGACGGCATTGGAGTTGGAGGCTGCTTCGGCGGAGCGGTCCCTTGCGGCGTTGGAGCTGATGTGTACTGTGGCGGAGGGGGCGGCGGCGGTGAGGGCGCATGCAATGGCGGTGCCGGTTATGGTGATGATAATGGGAAGGACGTCAGCACGGGGGAAGGAGTATGCGATTGGTGTGCTGGCCGTGATATATGGTGGTGGGGACGATGAACAGGCGGCGGAGGCTGTGGCGGCGGCACCGCCGGAGGAGGTGGCGCGTGCGGTGGAGCTGGCTTTGCAAGGGGATTGTAGTGGTAGAGGGAGGAGGAAAGGGGCCCAGCTACTGAAGGTGCTTCAAGAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

35.05

Weight (kDa)

6.42

Isoelectric Point (pI)

62.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 171 - 329 7.7e-23 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017188)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11550
fragaria_vesca FvH4_2g35860
malus_domestica MD15G1095700.v1.1
prunus_persica Prupe.1G450700_v2.0.a1
pyrus_communis pycom15g08800
rosa_chinensis RchiOBHm_Chr6g0305961
rosa_laevigata RLG00000010842
rosa_multiflora Rmu_sc0001809.1_g000055
rosa_rugosa Rorug06G0345700
rosa_samantha Rh6AG457500 Rh6BG443600 Rh6DG458000
rosa_wichuraiana Rw6G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 794
AccB1I GGYRCC 2 cut(s) 760, 883
AccBSI CCGCTC 2 cut(s) 106, 685
AccII CGCG 3 cut(s) 446, 522, 904
AcoI YGGCCR 1 cut(s) 828
AcsI RAATTY 3 cut(s) 266, 535, 573
AcuI CTGAAG 1 cut(s) 992
AcvI CACGTG 1 cut(s) 613
AcyI GRCGYC 1 cut(s) 791
AdeI CACNNNGTG 1 cut(s) 261
AfaI GTAC 1 cut(s) 715
AfiI CCNNNNNNNGG 2 cut(s) 403, 613
AgsI TTSAA 1 cut(s) 983
AjnI CCWGG 1 cut(s) 384
AjuI GAANNNNNNNTTGG 2 cut(s) 563, 595
AluBI AGCT 8 cut(s) 22, 252, 391, 409, 415, 706, 916, 967
AluI AGCT 8 cut(s) 22, 252, 391, 409, 415, 706, 916, 967
Alw21I GWGCWC 2 cut(s) 393, 411
Alw26I GTCTC 1 cut(s) 644
AlwNI CAGNNNCTG 1 cut(s) 970
AoxI GGCC 2 cut(s) 828, 960
ApaI GGGCCC 1 cut(s) 964
ApeKI GCWGC 3 cut(s) 401, 635, 671
ApoI RAATTY 3 cut(s) 266, 535, 573
AseI ATTAAT 1 cut(s) 515
AspLEI GCGC 5 cut(s) 451, 522, 586, 748, 904
AspS9I GGNCC 3 cut(s) 687, 960, 961
AsuC2I CCSGG 4 cut(s) 278, 434, 497, 628
AsuHPI GGTGA 5 cut(s) 150, 247, 446, 751, 784
AvaII GGWCC 1 cut(s) 687
BaeGI GKGCMC 1 cut(s) 964
BanI GGYRCC 2 cut(s) 760, 883
BanII GRGCYC 3 cut(s) 393, 411, 964
BbrPI CACGTG 1 cut(s) 613
Bbv12I GWGCWC 2 cut(s) 393, 411
BbvCI CCTCAGC 2 cut(s) 77, 171
BbvI GCAGC 3 cut(s) 413, 622, 658
BccI CCATC 2 cut(s) 39, 296
BceAI ACGGC 2 cut(s) 669, 815
BcgI CGANNNNNNTGC 2 cut(s) 805, 839
BciT130I CCWGG 1 cut(s) 386
BcnI CCSGG 4 cut(s) 278, 434, 497, 628
BcoDI GTCTC 1 cut(s) 644
BfoI RGCGCY 2 cut(s) 452, 587
BlpI GCTNAGC 1 cut(s) 416
Bme1390I CCNGG 5 cut(s) 278, 386, 434, 497, 628
Bme18I GGWCC 1 cut(s) 687
BmgT120I GGNCC 3 cut(s) 687, 960, 961
BmiI GGNNCC 5 cut(s) 689, 762, 885, 961, 962
BmrFI CCNGG 5 cut(s) 278, 386, 434, 497, 628
BmrI ACTGGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 429
BmuI ACTGGG 1 cut(s) 253
BpmI CTGGAG 2 cut(s) 368, 395
Bpu10I CCTNAGC 2 cut(s) 77, 171
Bpu1102I GCTNAGC 1 cut(s) 416
BpuMI CCSGG 4 cut(s) 278, 434, 497, 628
BsaAI YACGTR 1 cut(s) 613
BsaHI GRCGYC 1 cut(s) 791
BsaJI CCNNGG 1 cut(s) 627
BsaXI ACNNNNNCTCC 6 cut(s) 191, 209, 221, 239, 695, 725
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 613
Bse118I RCCGGY 2 cut(s) 562, 763
Bse1I ACTGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 759
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 1 cut(s) 627
BseGI GGATG 2 cut(s) 94, 288
BseLI CCNNNNNNNGG 2 cut(s) 403, 613
BseMI GCAATG 1 cut(s) 759
BseMII CTCAG 4 cut(s) 23, 91, 185, 430
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 7 cut(s) 106, 109, 159, 217, 226, 908, 964
BseSI GKGCMC 1 cut(s) 964
BseXI GCAGC 3 cut(s) 413, 622, 658
BseYI CCCAGC 1 cut(s) 963
BsgI GTGCAG 1 cut(s) 46
Bsh1236I CGCG 3 cut(s) 446, 522, 904
BshFI GGCC 2 cut(s) 830, 962
BshNI GGYRCC 2 cut(s) 760, 883
BsiHKAI GWGCWC 2 cut(s) 393, 411
BsiSI CCGG 7 cut(s) 278, 434, 497, 563, 627, 764, 890
BslFI GGGAC 2 cut(s) 673, 863
BslI CCNNNNNNNGG 2 cut(s) 403, 613
BsmAI GTCTC 1 cut(s) 644
BsmBI CGTCTC 1 cut(s) 644
BsmFI GGGAC 2 cut(s) 673, 863
BsnI GGCC 2 cut(s) 830, 962
Bsp120I GGGCCC 1 cut(s) 960
Bsp1286I GDGCHC 3 cut(s) 393, 411, 964
Bsp143I GATC 2 cut(s) 271, 441
Bsp1720I GCTNAGC 1 cut(s) 416
BspANI GGCC 2 cut(s) 830, 962
BspCNI CTCAG 4 cut(s) 22, 90, 184, 429
BspFNI CGCG 3 cut(s) 446, 522, 904
BspLI GGNNCC 5 cut(s) 689, 762, 885, 961, 962
BspQI GCTCTTC 1 cut(s) 398
BspT107I GGYRCC 2 cut(s) 760, 883
BsrBI CCGCTC 2 cut(s) 106, 685
BsrDI GCAATG 1 cut(s) 759
BsrFI RCCGGY 2 cut(s) 562, 763
BsrI ACTGG 1 cut(s) 259
BssAI RCCGGY 2 cut(s) 562, 763
BssECI CCNNGG 1 cut(s) 627
BssMI GATC 2 cut(s) 271, 441
BssNI GRCGYC 1 cut(s) 791
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 3 cut(s) 73, 608, 718
Bst6I CTCTTC 3 cut(s) 41, 235, 398
BstACI GRCGYC 1 cut(s) 791
BstBAI YACGTR 1 cut(s) 613
BstC8I GCNNGC 4 cut(s) 750, 828, 906, 918
BstDEI CTNAG 4 cut(s) 9, 77, 171, 416
BstF5I GGATG 2 cut(s) 94, 288
BstFNI CGCG 3 cut(s) 446, 522, 904
BstH2I RGCGCY 2 cut(s) 452, 587
BstHHI GCGC 5 cut(s) 451, 522, 586, 748, 904
BstKTI GATC 2 cut(s) 274, 444
BstMAI GTCTC 1 cut(s) 644
BstMBI GATC 2 cut(s) 271, 441
BstNI CCWGG 1 cut(s) 386
BstNSI RCATGY 1 cut(s) 752
BstSCI CCNGG 5 cut(s) 276, 384, 432, 495, 626
BstSLI GKGCMC 1 cut(s) 964
BstUI CGCG 3 cut(s) 446, 522, 904
BstV1I GCAGC 3 cut(s) 413, 622, 658
BsuRI GGCC 2 cut(s) 830, 962
BtsCI GGATG 2 cut(s) 94, 288
BtsI GCAGTG 2 cut(s) 58, 128
BtsIMutI CAGTG 3 cut(s) 58, 128, 266
Cac8I GCNNGC 4 cut(s) 750, 828, 906, 918
CaiI CAGNNNCTG 1 cut(s) 970
CfoI GCGC 5 cut(s) 451, 522, 586, 748, 904
Cfr10I RCCGGY 2 cut(s) 562, 763
Cfr13I GGNCC 3 cut(s) 687, 960, 961
Csp6I GTAC 1 cut(s) 714
CviAII CATG 2 cut(s) 398, 749
CviQI GTAC 1 cut(s) 714
DdeI CTNAG 4 cut(s) 9, 77, 171, 416
DpnI GATC 2 cut(s) 273, 443
DpnII GATC 2 cut(s) 271, 441
DraI TTTAAA 1 cut(s) 540
DraIII CACNNNGTG 1 cut(s) 261
EaeI YGGCCR 1 cut(s) 828
Eam1104I CTCTTC 3 cut(s) 41, 235, 398
EarI CTCTTC 3 cut(s) 41, 235, 398
EciI GGCGGA 8 cut(s) 44, 90, 211, 345, 611, 695, 737, 881
Ecl136II GAGCTC 2 cut(s) 391, 409
Eco24I GRGCYC 3 cut(s) 393, 411, 964
Eco47I GGWCC 1 cut(s) 687
Eco53kI GAGCTC 2 cut(s) 391, 409
Eco57I CTGAAG 1 cut(s) 992
Eco72I CACGTG 1 cut(s) 613
EcoICRI GAGCTC 2 cut(s) 391, 409
EcoO109I RGGNCCY 1 cut(s) 960
EcoRII CCWGG 1 cut(s) 384
EcoT38I GRGCYC 3 cut(s) 393, 411, 964
Esp3I CGTCTC 1 cut(s) 644
FaeI CATG 2 cut(s) 401, 752
FaiI YATR 7 cut(s) 399, 430, 750, 770, 813, 838, 840
FaqI GGGAC 2 cut(s) 673, 863
FatI CATG 2 cut(s) 397, 748
FauI CCCGC 3 cut(s) 74, 492, 515
FokI GGATG 2 cut(s) 81, 275
FriOI GRGCYC 3 cut(s) 393, 411, 964
GlaI GCGC 5 cut(s) 450, 521, 585, 747, 903
GsaI CCCAGC 1 cut(s) 967
GsuI CTGGAG 2 cut(s) 368, 395
HaeII RGCGCY 2 cut(s) 452, 587
HaeIII GGCC 2 cut(s) 830, 962
HapII CCGG 7 cut(s) 278, 434, 497, 563, 627, 764, 890
HhaI GCGC 5 cut(s) 451, 522, 586, 748, 904
Hin1I GRCGYC 1 cut(s) 791
Hin1II CATG 2 cut(s) 401, 752
Hin6I GCGC 5 cut(s) 449, 520, 584, 746, 902
HinP1I GCGC 5 cut(s) 449, 520, 584, 746, 902
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HindIII AAGCTT 1 cut(s) 250
HinfI GANTC 3 cut(s) 152, 281, 623
HpaII CCGG 7 cut(s) 278, 434, 497, 563, 627, 764, 890
HphI GGTGA 5 cut(s) 150, 247, 446, 751, 784
Hpy166II GTNNAC 2 cut(s) 189, 714
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 2 cut(s) 509, 983
Hpy8I GTNNAC 2 cut(s) 189, 714
HpyAV CCTTC 4 cut(s) 147, 780, 799, 967
HpyCH4III ACNGT 3 cut(s) 73, 608, 718
HpyCH4IV ACGT 2 cut(s) 612, 791
HpyCH4V TGCA 4 cut(s) 63, 401, 752, 925
HpyF3I CTNAG 4 cut(s) 9, 77, 171, 416
HpySE526I ACGT 2 cut(s) 612, 791
Hsp92I GRCGYC 1 cut(s) 791
Hsp92II CATG 2 cut(s) 401, 752
HspAI GCGC 5 cut(s) 449, 520, 584, 746, 902
Kzo9I GATC 2 cut(s) 271, 441
LguI GCTCTTC 1 cut(s) 398
LmnI GCTCC 8 cut(s) 111, 388, 406, 414, 436, 682, 703, 913
Lsp1109I GCAGC 3 cut(s) 413, 622, 658
LweI GCATC 1 cut(s) 429
MaeII ACGT 2 cut(s) 612, 791
MaeIII GTNAC 1 cut(s) 608
MalI GATC 2 cut(s) 273, 443
MbiI CCGCTC 2 cut(s) 106, 685
MboI GATC 2 cut(s) 271, 441
MboII GAAGA 4 cut(s) 28, 43, 222, 385
MhlI GDGCHC 3 cut(s) 393, 411, 964
MluCI AATT 4 cut(s) 266, 512, 535, 573
MlyI GAGTC 2 cut(s) 275, 632
MmeI TCCRAC 3 cut(s) 147, 645, 681
MseI TTAA 2 cut(s) 515, 539
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 7 cut(s) 278, 434, 497, 563, 627, 764, 890
MspR9I CCNGG 5 cut(s) 278, 386, 434, 497, 628
MvaI CCWGG 1 cut(s) 386
MvnI CGCG 3 cut(s) 446, 522, 904
NciI CCSGG 4 cut(s) 278, 434, 497, 628
NdeII GATC 2 cut(s) 271, 441
NlaIII CATG 2 cut(s) 401, 752
NlaIV GGNNCC 5 cut(s) 689, 762, 885, 961, 962
NmuCI GTSAC 1 cut(s) 608
NspI RCATGY 1 cut(s) 752
PaeI GCATGC 1 cut(s) 752
PciSI GCTCTTC 1 cut(s) 398
PfeI GAWTC 1 cut(s) 152
PfoI TCCNGGA 2 cut(s) 276, 384
PleI GAGTC 2 cut(s) 275, 631
PmaCI CACGTG 1 cut(s) 613
PmlI CACGTG 1 cut(s) 613
PpsI GAGTC 2 cut(s) 275, 631
Ppu21I YACGTR 1 cut(s) 613
PshBI ATTAAT 1 cut(s) 515
Psp124BI GAGCTC 2 cut(s) 393, 411
Psp6I CCWGG 1 cut(s) 384
PspCI CACGTG 1 cut(s) 613
PspFI CCCAGC 1 cut(s) 963
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 5 cut(s) 689, 762, 885, 961, 962
PspOMI GGGCCC 1 cut(s) 960
PspPI GGNCC 3 cut(s) 687, 960, 961
PstNI CAGNNNCTG 1 cut(s) 970
RsaI GTAC 1 cut(s) 715
RsaNI GTAC 1 cut(s) 714
SacI GAGCTC 2 cut(s) 393, 411
SapI GCTCTTC 1 cut(s) 398
SaqAI TTAA 2 cut(s) 515, 539
Sau3AI GATC 2 cut(s) 271, 441
Sau96I GGNCC 3 cut(s) 687, 960, 961
SchI GAGTC 2 cut(s) 275, 632
ScrFI CCNGG 5 cut(s) 278, 386, 434, 497, 628
SduI GDGCHC 3 cut(s) 393, 411, 964
SfaNI GCATC 1 cut(s) 429
SinI GGWCC 1 cut(s) 687
SphI GCATGC 1 cut(s) 752
Sse9I AATT 4 cut(s) 266, 512, 535, 573
SstI GAGCTC 2 cut(s) 393, 411
StyD4I CCNGG 5 cut(s) 276, 384, 432, 495, 626
TaaI ACNGT 3 cut(s) 73, 608, 718
TaiI ACGT 2 cut(s) 615, 794
TaqI TCGA 1 cut(s) 270
TasI AATT 4 cut(s) 266, 512, 535, 573
TatI WGTACW 1 cut(s) 713
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 2 cut(s) 515, 539
Tru9I TTAA 2 cut(s) 515, 539
TscAI CASTG 3 cut(s) 65, 135, 266
TseFI GTSAC 1 cut(s) 608
TseI GCWGC 3 cut(s) 401, 635, 671
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 3 cut(s) 17, 144, 870
TspRI CASTG 3 cut(s) 65, 135, 266
VpaK11BI GGWCC 1 cut(s) 687
VspI ATTAAT 1 cut(s) 515
XapI RAATTY 3 cut(s) 266, 535, 573
XceI RCATGY 1 cut(s) 752
ZraI GACGTC 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.