FvH4_2g35860

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017188
Physical Location & Seq
Forward (+)
26387955 .. 26389675
1721 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35860.t1

Sequence Viewer

Length: 1026 bp
ATGAAAACCCAGCAGCCAAAGCTTAAGACCCAGCTTTTCTCTTGTGGGTTCTTCGGCCATTGTACCGGAACAGTCCTCAGCCCCACCACCCCTCATCCTCCACCTCTCCCTTTCTCCTCCACCGATCCATCACCCCCTTCATTCTCAGCTCCCACTGCTCCAACACAACCCGACCCGCTAACCCACCACCAGTCTCACCCCGACTCCGGATCATCTTCCTCCTCCACCTCACAGAGCTTCACCCAATGGAAATTCACTCTCCCATCAGAGTCCCCTATTCTCTCCTCCTACCCACAACCCGGATCCGACCCGGATTTTGACCATGTCGCCACTTTTCGGTCCAGCCCAGCTCCACCGCCTCCACCGCCCATGTCCTCCACCGGCCTCCAAGAGCTCTTCCACGCAGCGGAGCTCCAACTCAGCACGGGGTCATTTCCGGAGCAGCTGGCAGCACTCCACCTCCTGGAACGGTCTCTGGTTCCCTACCCGCCATCCGACCCGGAATGCCCGCCCGAACTGATGCGCGGGTTGGTGCGGATTTTGAAAAACAAAGCGGGGGCAAAACCGGCAACCAAAGTGTTGTTGGCGCTCTGTTTGGCGGAGCCTAACCGCCACGTGGCGGTTGAGGCCGGGGCGGCTTCTGCGGTGGTCGAGACGGCGCTGGAGCTGGAGGATGCTGCGGCGGAGCGGGCACTGGCGGCTTTGGAGTTGATGTGCACTGTGGCGGAGGGGGCGGCGGAGGTGAGGTCCCACGCACTGGCGGTGCCGGTGATGGTGATGATGATGGGCCGGACTTCAGCTAGGGGGAAGGAGTATGCGATAGGCGTGTTGGCAGTTATATACGGTGGCGCGTCGGAGGATGAGGCAGCGGAAGCGGTTTCGGCAGCTCCGGCAGAGGAGGTGGCGCGTGCAGTGGAGTTGGCGTTGAAAGGGGATTGTAGTGGTAGGGGAAGGAGGAAAGGGGCCCAACTATTGAAGGCGCTTCGACCAGAAGAAGAAAAAGGAGACTTGAATTTGGACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

342

Amino Acids

35.86

Weight (kDa)

5.4

Isoelectric Point (pI)

62.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 171 - 329 5.6e-24 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017188)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11550
fragaria_vesca FvH4_2g35860
malus_domestica MD15G1095700.v1.1
prunus_persica Prupe.1G450700_v2.0.a1
pyrus_communis pycom15g08800
rosa_chinensis RchiOBHm_Chr6g0305961
rosa_laevigata RLG00000010842
rosa_multiflora Rmu_sc0001809.1_g000055
rosa_rugosa Rorug06G0345700
rosa_samantha Rh6AG457500 Rh6BG443600 Rh6DG458000
rosa_wichuraiana Rw6G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 763
AccB7I CCANNNNNTGG 2 cut(s) 463, 757
AccBSI CCGCTC 1 cut(s) 688
AccII CGCG 3 cut(s) 525, 851, 907
AccIII TCCGGA 2 cut(s) 206, 436
AclWI GGATC 4 cut(s) 119, 217, 297, 310
AcoI YGGCCR 1 cut(s) 55
AcsI RAATTY 2 cut(s) 251, 1012
AcuI CTGAAG 1 cut(s) 780
AcvI CACGTG 1 cut(s) 616
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 8 cut(s) 206, 299, 336, 406, 463, 616, 619, 757
AflII CTTAAG 1 cut(s) 23
AgsI TTSAA 4 cut(s) 544, 928, 976, 1012
AjnI CCWGG 1 cut(s) 462
Alw21I GWGCWC 3 cut(s) 396, 414, 719
Alw26I GTCTC 4 cut(s) 198, 477, 647, 999
Alw44I GTGCAC 1 cut(s) 715
AlwI GGATC 4 cut(s) 119, 217, 297, 310
Aor13HI TCCGGA 2 cut(s) 206, 436
AoxI GGCC 5 cut(s) 55, 382, 627, 787, 963
ApaI GGGCCC 1 cut(s) 967
ApaLI GTGCAC 1 cut(s) 715
ApeKI GCWGC 7 cut(s) 13, 404, 442, 449, 677, 866, 884
ApoI RAATTY 2 cut(s) 251, 1012
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AspLEI GCGC 6 cut(s) 525, 589, 661, 851, 907, 982
AspS9I GGNCC 6 cut(s) 339, 747, 787, 963, 964, 1018
AsuC2I CCSGG 4 cut(s) 300, 311, 500, 631
AsuHPI GGTGA 6 cut(s) 123, 188, 232, 754, 781, 787
AvaII GGWCC 3 cut(s) 339, 747, 1018
BaeGI GKGCMC 3 cut(s) 694, 719, 967
BamHI GGATCC 1 cut(s) 302
BanI GGYRCC 1 cut(s) 763
BanII GRGCYC 3 cut(s) 396, 414, 967
BbrPI CACGTG 1 cut(s) 616
Bbv12I GWGCWC 3 cut(s) 396, 414, 719
BbvCI CCTCAGC 1 cut(s) 77
BbvI GCAGC 7 cut(s) 25, 416, 454, 461, 664, 878, 896
BccI CCATC 5 cut(s) 136, 271, 499, 766, 778
BceAI ACGGC 1 cut(s) 672
BciT130I CCWGG 1 cut(s) 464
BcnI CCSGG 4 cut(s) 300, 311, 500, 631
BcoDI GTCTC 4 cut(s) 198, 477, 647, 999
BfaI CTAG 1 cut(s) 801
BfoI RGCGCY 3 cut(s) 590, 662, 983
BfrI CTTAAG 1 cut(s) 23
BglI GCCNNNNNGGC 1 cut(s) 635
Bme1390I CCNGG 5 cut(s) 300, 311, 464, 500, 631
Bme18I GGWCC 3 cut(s) 339, 747, 1018
BmgT120I GGNCC 6 cut(s) 339, 747, 787, 963, 964, 1018
BmiI GGNNCC 8 cut(s) 304, 480, 603, 749, 765, 964, 965, 1020
BmrFI CCNGG 5 cut(s) 300, 311, 464, 500, 631
BmsI GCATC 2 cut(s) 510, 664
BpmI CTGGAG 2 cut(s) 683, 689
Bpu10I CCTNAGC 1 cut(s) 77
BpuMI CCSGG 4 cut(s) 300, 311, 500, 631
BsaAI YACGTR 1 cut(s) 616
BsaI GGTCTC 1 cut(s) 477
BsaJI CCNNGG 1 cut(s) 630
BsaWI WCCGGW 3 cut(s) 65, 206, 436
Bsc4I CCNNNNNNNGG 8 cut(s) 206, 299, 336, 406, 463, 616, 619, 757
Bse118I RCCGGY 3 cut(s) 380, 565, 766
Bse1I ACTGG 3 cut(s) 190, 699, 762
BseAI TCCGGA 2 cut(s) 206, 436
BseBI CCWGG 1 cut(s) 464
BseDI CCNNGG 1 cut(s) 630
BseGI GGATG 4 cut(s) 94, 491, 679, 865
BseLI CCNNNNNNNGG 8 cut(s) 206, 299, 336, 406, 463, 616, 619, 757
BseMII CTCAG 3 cut(s) 91, 159, 433
BseNI ACTGG 3 cut(s) 190, 699, 762
BseRI GAGGAG 4 cut(s) 106, 211, 274, 911
BseSI GKGCMC 3 cut(s) 694, 719, 967
BseXI GCAGC 7 cut(s) 25, 416, 454, 461, 664, 878, 896
BseYI CCCAGC 3 cut(s) 9, 30, 346
BsgI GTGCAG 1 cut(s) 930
Bsh1236I CGCG 3 cut(s) 525, 851, 907
BshFI GGCC 5 cut(s) 57, 384, 629, 789, 965
BshNI GGYRCC 1 cut(s) 763
BsiHKAI GWGCWC 3 cut(s) 396, 414, 719
BslFI GGGAC 2 cut(s) 256, 733
BslI CCNNNNNNNGG 8 cut(s) 206, 299, 336, 406, 463, 616, 619, 757
BsmAI GTCTC 4 cut(s) 198, 477, 647, 999
BsmBI CGTCTC 1 cut(s) 647
BsmFI GGGAC 2 cut(s) 256, 733
BsmI GAATGC 1 cut(s) 509
BsnI GGCC 5 cut(s) 57, 384, 629, 789, 965
Bso31I GGTCTC 1 cut(s) 477
Bsp120I GGGCCC 1 cut(s) 963
Bsp1286I GDGCHC 5 cut(s) 396, 414, 694, 719, 967
Bsp13I TCCGGA 2 cut(s) 206, 436
Bsp143I GATC 3 cut(s) 124, 209, 302
BspANI GGCC 5 cut(s) 57, 384, 629, 789, 965
BspCNI CTCAG 3 cut(s) 90, 158, 432
BspEI TCCGGA 2 cut(s) 206, 436
BspFNI CGCG 3 cut(s) 525, 851, 907
BspLI GGNNCC 8 cut(s) 304, 480, 603, 749, 765, 964, 965, 1020
BspPI GGATC 4 cut(s) 119, 217, 297, 310
BspQI GCTCTTC 1 cut(s) 401
BspT107I GGYRCC 1 cut(s) 763
BspTI CTTAAG 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 477
BsrBI CCGCTC 1 cut(s) 688
BsrFI RCCGGY 3 cut(s) 380, 565, 766
BsrI ACTGG 3 cut(s) 190, 699, 762
BssAI RCCGGY 3 cut(s) 380, 565, 766
BssECI CCNNGG 1 cut(s) 630
BssMI GATC 3 cut(s) 124, 209, 302
Bst2UI CCWGG 1 cut(s) 464
Bst4CI ACNGT 4 cut(s) 73, 471, 721, 845
Bst6I CTCTTC 1 cut(s) 401
BstAFI CTTAAG 1 cut(s) 23
BstBAI YACGTR 1 cut(s) 616
BstC8I GCNNGC 4 cut(s) 447, 509, 690, 909
BstDEI CTNAG 3 cut(s) 77, 145, 419
BstF5I GGATG 4 cut(s) 94, 491, 679, 865
BstFNI CGCG 3 cut(s) 525, 851, 907
BstH2I RGCGCY 3 cut(s) 590, 662, 983
BstHHI GCGC 6 cut(s) 525, 589, 661, 851, 907, 982
BstKTI GATC 3 cut(s) 127, 212, 305
BstMAI GTCTC 4 cut(s) 198, 477, 647, 999
BstMBI GATC 3 cut(s) 124, 209, 302
BstNI CCWGG 1 cut(s) 464
BstSCI CCNGG 5 cut(s) 298, 309, 462, 498, 629
BstSLI GKGCMC 3 cut(s) 694, 719, 967
BstUI CGCG 3 cut(s) 525, 851, 907
BstV1I GCAGC 7 cut(s) 25, 416, 454, 461, 664, 878, 896
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BsuRI GGCC 5 cut(s) 57, 384, 629, 789, 965
BtsCI GGATG 4 cut(s) 94, 491, 679, 865
BtsI GCAGTG 2 cut(s) 153, 918
BtsIMutI CAGTG 5 cut(s) 153, 692, 717, 755, 918
Cac8I GCNNGC 4 cut(s) 447, 509, 690, 909
CfoI GCGC 6 cut(s) 525, 589, 661, 851, 907, 982
Cfr10I RCCGGY 3 cut(s) 380, 565, 766
Cfr13I GGNCC 6 cut(s) 339, 747, 787, 963, 964, 1018
CseI GACGC 1 cut(s) 840
Csp6I GTAC 1 cut(s) 63
CviAII CATG 2 cut(s) 323, 370
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 3 cut(s) 77, 145, 419
DpnI GATC 3 cut(s) 126, 211, 304
DpnII GATC 3 cut(s) 124, 209, 302
EaeI YGGCCR 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
EciI GGCGGA 4 cut(s) 614, 698, 740, 752
Ecl136II GAGCTC 2 cut(s) 394, 412
Eco24I GRGCYC 3 cut(s) 396, 414, 967
Eco31I GGTCTC 1 cut(s) 477
Eco47I GGWCC 3 cut(s) 339, 747, 1018
Eco53kI GAGCTC 2 cut(s) 394, 412
Eco57I CTGAAG 1 cut(s) 780
Eco72I CACGTG 1 cut(s) 616
EcoICRI GAGCTC 2 cut(s) 394, 412
EcoO109I RGGNCCY 2 cut(s) 747, 963
EcoRII CCWGG 1 cut(s) 462
EcoT38I GRGCYC 3 cut(s) 396, 414, 967
Esp3I CGTCTC 1 cut(s) 647
FaeI CATG 2 cut(s) 326, 373
FaiI YATR 5 cut(s) 324, 371, 816, 839, 841
FaqI GGGAC 2 cut(s) 256, 733
FatI CATG 2 cut(s) 322, 369
FauI CCCGC 6 cut(s) 183, 495, 516, 518, 547, 681
FokI GGATG 4 cut(s) 81, 478, 686, 872
FriOI GRGCYC 3 cut(s) 396, 414, 967
FspBI CTAG 1 cut(s) 801
GlaI GCGC 6 cut(s) 524, 588, 660, 850, 906, 981
GsaI CCCAGC 3 cut(s) 13, 34, 350
GsuI CTGGAG 2 cut(s) 683, 689
HaeII RGCGCY 3 cut(s) 590, 662, 983
HaeIII GGCC 5 cut(s) 57, 384, 629, 789, 965
HgaI GACGC 1 cut(s) 840
HhaI GCGC 6 cut(s) 525, 589, 661, 851, 907, 982
Hin1II CATG 2 cut(s) 326, 373
Hin6I GCGC 6 cut(s) 523, 587, 659, 849, 905, 980
HinP1I GCGC 6 cut(s) 523, 587, 659, 849, 905, 980
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 2 cut(s) 203, 269
HphI GGTGA 6 cut(s) 123, 188, 232, 754, 781, 787
Hpy166II GTNNAC 1 cut(s) 717
Hpy188I TCNGA 4 cut(s) 268, 307, 496, 856
Hpy188III TCNNGA 3 cut(s) 207, 437, 652
Hpy8I GTNNAC 1 cut(s) 717
Hpy99I CGWCG 1 cut(s) 856
HpyAV CCTTC 4 cut(s) 147, 802, 945, 970
HpyCH4III ACNGT 4 cut(s) 73, 471, 721, 845
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 2 cut(s) 717, 911
HpyF3I CTNAG 3 cut(s) 77, 145, 419
HpySE526I ACGT 1 cut(s) 615
Hsp92II CATG 2 cut(s) 326, 373
HspAI GCGC 6 cut(s) 523, 587, 659, 849, 905, 980
Kpn2I TCCGGA 2 cut(s) 206, 436
Kzo9I GATC 3 cut(s) 124, 209, 302
LguI GCTCTTC 1 cut(s) 401
Lsp1109I GCAGC 7 cut(s) 25, 416, 454, 461, 664, 878, 896
LweI GCATC 2 cut(s) 510, 664
MaeI CTAG 1 cut(s) 801
MaeII ACGT 1 cut(s) 615
MalI GATC 3 cut(s) 126, 211, 304
MbiI CCGCTC 1 cut(s) 688
MboI GATC 3 cut(s) 124, 209, 302
MboII GAAGA 5 cut(s) 43, 207, 388, 1004, 1007
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 5 cut(s) 396, 414, 694, 719, 967
MluCI AATT 2 cut(s) 251, 1012
MlyI GAGTC 2 cut(s) 197, 278
MmeI TCCRAC 5 cut(s) 185, 330, 439, 519, 834
MroI TCCGGA 2 cut(s) 206, 436
MseI TTAA 1 cut(s) 24
MspA1I CMGCKG 3 cut(s) 407, 445, 869
MspCI CTTAAG 1 cut(s) 23
MspR9I CCNGG 5 cut(s) 300, 311, 464, 500, 631
Mva1269I GAATGC 1 cut(s) 509
MvaI CCWGG 1 cut(s) 464
MvnI CGCG 3 cut(s) 525, 851, 907
NciI CCSGG 4 cut(s) 300, 311, 500, 631
NdeII GATC 3 cut(s) 124, 209, 302
NlaIII CATG 2 cut(s) 326, 373
NlaIV GGNNCC 8 cut(s) 304, 480, 603, 749, 765, 964, 965, 1020
PciSI GCTCTTC 1 cut(s) 401
PctI GAATGC 1 cut(s) 509
PflFI GACNNNGTC 1 cut(s) 323
PflMI CCANNNNNTGG 2 cut(s) 463, 757
PfoI TCCNGGA 1 cut(s) 462
PleI GAGTC 2 cut(s) 197, 277
PmaCI CACGTG 1 cut(s) 616
PmlI CACGTG 1 cut(s) 616
PpsI GAGTC 2 cut(s) 197, 277
Ppu21I YACGTR 1 cut(s) 616
PpuMI RGGWCCY 1 cut(s) 747
Psp124BI GAGCTC 2 cut(s) 396, 414
Psp5II RGGWCCY 1 cut(s) 747
Psp6I CCWGG 1 cut(s) 462
PspCI CACGTG 1 cut(s) 616
PspFI CCCAGC 3 cut(s) 9, 30, 346
PspGI CCWGG 1 cut(s) 462
PspN4I GGNNCC 8 cut(s) 304, 480, 603, 749, 765, 964, 965, 1020
PspOMI GGGCCC 1 cut(s) 963
PspPI GGNCC 6 cut(s) 339, 747, 787, 963, 964, 1018
PspPPI RGGWCCY 1 cut(s) 747
PsuI RGATCY 1 cut(s) 302
PsyI GACNNNGTC 1 cut(s) 323
PvuII CAGCTG 1 cut(s) 445
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SacI GAGCTC 2 cut(s) 396, 414
SapI GCTCTTC 1 cut(s) 401
SaqAI TTAA 1 cut(s) 24
Sau3AI GATC 3 cut(s) 124, 209, 302
Sau96I GGNCC 6 cut(s) 339, 747, 787, 963, 964, 1018
SchI GAGTC 2 cut(s) 197, 278
ScrFI CCNGG 5 cut(s) 300, 311, 464, 500, 631
SduI GDGCHC 5 cut(s) 396, 414, 694, 719, 967
SfaNI GCATC 2 cut(s) 510, 664
SinI GGWCC 3 cut(s) 339, 747, 1018
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 2 cut(s) 251, 1012
SspMI CTAG 1 cut(s) 801
SstI GAGCTC 2 cut(s) 396, 414
StyD4I CCNGG 5 cut(s) 298, 309, 462, 498, 629
TaaI ACNGT 4 cut(s) 73, 471, 721, 845
TaiI ACGT 1 cut(s) 618
TaqI TCGA 2 cut(s) 651, 985
TaqII GACCGA 1 cut(s) 327
TasI AATT 2 cut(s) 251, 1012
TauI GCSGC 4 cut(s) 638, 683, 701, 737
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 5 cut(s) 160, 699, 724, 762, 918
TseI GCWGC 7 cut(s) 13, 404, 442, 449, 677, 866, 884
TspDTI ATGAA 2 cut(s) 17, 129
TspRI CASTG 5 cut(s) 160, 699, 724, 762, 918
Tth111I GACNNNGTC 1 cut(s) 323
Van91I CCANNNNNTGG 2 cut(s) 463, 757
Vha464I CTTAAG 1 cut(s) 23
VneI GTGCAC 1 cut(s) 715
VpaK11BI GGWCC 3 cut(s) 339, 747, 1018
XapI RAATTY 2 cut(s) 251, 1012
XcmI CCANNNNNNNNNTGG 1 cut(s) 580
XspI CTAG 1 cut(s) 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.