Rmu_sc0001809.1_g000055

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001809.1
OG0017188
Physical Location & Seq
Reverse (-)
289876 .. 290883
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001809.1_g000055.1.cds

Sequence Viewer

Length: 1008 bp
atgagaacccagcagcctaagcttaagacccagtttttctcttgtggattcttcggccactgtaccggaacagtcctcagccccaccacgcctcatcctccaactctccctttctcatccaccgatccatttccaccttcgctgtcaattcccgctccttcgacacaatccgaccccctaacccaccaccagtcgaagcccgactccgaatcatcttcctcctcaacctcacagagcttcacccagtggaaattccctctccctgagtcacccattctctcccacacacaacctggatccgaccaggattttgacgctgtggccatatttcagtccagcccagcaccgccgccgccgccgcagcccatgtcctccaccggcctccaagagctcttccatgcagcagagctccaactcagcgtcgggtcatttccggagcagctcgcagcactccagctcctggaacgctctctggtcccctacccaccatccgacccggagtgcccgcccgaattgatgcgcgggttggtgcgaaatttgaaaaacaaagctggggcaaaaccggcaacgaaagtgttgttggcgctctgtttggcggaggctaaccgccacgtggcggttgaggccggggcagcgtctgcggtggtcgagacggcgctggagctggaggatacggcggcggagcgggccctggcggctctggagttaatgtgcactgtggcggaaggggcggcggaggtgaagtcccacgcgctggcggtgccggtgatggtgatgatgatgggcaggacgtcggctcgggggaaggaatacgcaataggggtgttggcggttatatacggtggcgcatctgaagatgagaccgcggaagcggtttcggcagctccggcggaggaggtggcccgtgcagtggagttggcgttgaaaggggattgtagtggtaggggaaggaggaaaggggcccaattattgaaggcgctccaaccagaagaagagaaagagacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

335

Amino Acids

35.38

Weight (kDa)

5.18

Isoelectric Point (pI)

62.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017188)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11550
fragaria_vesca FvH4_2g35860
malus_domestica MD15G1095700.v1.1
prunus_persica Prupe.1G450700_v2.0.a1
pyrus_communis pycom15g08800
rosa_chinensis RchiOBHm_Chr6g0305961
rosa_laevigata RLG00000010842
rosa_multiflora Rmu_sc0001809.1_g000055
rosa_rugosa Rorug06G0345700
rosa_samantha Rh6AG457500 Rh6BG443600 Rh6DG458000
rosa_wichuraiana Rw6G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 794
AccB1I GGYRCC 1 cut(s) 760
AccB7I CCANNNNNTGG 2 cut(s) 460, 754
AccBSI CCGCTC 2 cut(s) 155, 685
AccII CGCG 3 cut(s) 522, 752, 866
AccIII TCCGGA 1 cut(s) 433
AclWI GGATC 3 cut(s) 119, 291, 304
AcoI YGGCCR 2 cut(s) 55, 321
AcsI RAATTY 2 cut(s) 251, 535
AcuI CTGAAG 1 cut(s) 873
AcvI CACGTG 1 cut(s) 613
AcyI GRCGYC 1 cut(s) 791
AdeI CACNNNGTG 1 cut(s) 246
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 5 cut(s) 460, 613, 616, 754, 910
AflII CTTAAG 1 cut(s) 23
AgsI TTSAA 3 cut(s) 541, 925, 973
AjnI CCWGG 4 cut(s) 292, 303, 459, 690
AjuI GAANNNNNNNTTGG 2 cut(s) 563, 595
AluBI AGCT 9 cut(s) 22, 237, 391, 409, 442, 457, 551, 664, 884
AluI AGCT 9 cut(s) 22, 237, 391, 409, 442, 457, 551, 664, 884
Alw21I GWGCWC 3 cut(s) 393, 411, 716
Alw26I GTCTC 3 cut(s) 644, 854, 995
Alw44I GTGCAC 1 cut(s) 712
AlwI GGATC 3 cut(s) 119, 291, 304
AlwNI CAGNNNCTG 2 cut(s) 460, 638
Ama87I CYCGRG 1 cut(s) 798
Aor13HI TCCGGA 1 cut(s) 433
AoxI GGCC 7 cut(s) 55, 321, 379, 624, 687, 900, 960
ApaI GGGCCC 2 cut(s) 691, 964
ApaLI GTGCAC 1 cut(s) 712
ApeKI GCWGC 7 cut(s) 13, 361, 401, 439, 446, 632, 881
ApoI RAATTY 2 cut(s) 251, 535
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
AspLEI GCGC 6 cut(s) 522, 586, 658, 754, 848, 979
AspS9I GGNCC 6 cut(s) 475, 687, 688, 901, 960, 961
AsuC2I CCSGG 2 cut(s) 497, 628
AsuHPI GGTGA 5 cut(s) 232, 261, 751, 778, 784
AvaI CYCGRG 1 cut(s) 798
AvaII GGWCC 1 cut(s) 475
BaeGI GKGCMC 4 cut(s) 506, 691, 716, 964
BalI TGGCCA 1 cut(s) 323
BamHI GGATCC 1 cut(s) 296
BanI GGYRCC 1 cut(s) 760
BanII GRGCYC 4 cut(s) 393, 411, 691, 964
BbrPI CACGTG 1 cut(s) 613
Bbv12I GWGCWC 3 cut(s) 393, 411, 716
BbvCI CCTCAGC 1 cut(s) 77
BbvI GCAGC 7 cut(s) 25, 373, 413, 451, 458, 644, 893
BccI CCATC 3 cut(s) 496, 763, 775
BceAI ACGGC 2 cut(s) 669, 690
BciT130I CCWGG 4 cut(s) 294, 305, 461, 692
BciVI GTATCC 1 cut(s) 664
BcnI CCSGG 2 cut(s) 497, 628
BcoDI GTCTC 3 cut(s) 644, 854, 995
BfoI RGCGCY 3 cut(s) 587, 659, 980
BfrI CTTAAG 1 cut(s) 23
BfuI GTATCC 1 cut(s) 664
BglI GCCNNNNNGGC 1 cut(s) 695
Bme1390I CCNGG 6 cut(s) 294, 305, 461, 497, 628, 692
Bme18I GGWCC 1 cut(s) 475
BmeT110I CYCGRG 1 cut(s) 798
BmgT120I GGNCC 6 cut(s) 475, 687, 688, 901, 960, 961
BmiI GGNNCC 6 cut(s) 298, 477, 689, 762, 961, 962
BmrFI CCNGG 6 cut(s) 294, 305, 461, 497, 628, 692
BmrI ACTGGG 2 cut(s) 25, 238
BmsI GCATC 2 cut(s) 507, 857
BmuI ACTGGG 2 cut(s) 25, 238
BpmI CTGGAG 4 cut(s) 437, 680, 686, 722
Bpu10I CCTNAGC 2 cut(s) 18, 77
BpuMI CCSGG 2 cut(s) 497, 628
BsaAI YACGTR 1 cut(s) 613
BsaHI GRCGYC 1 cut(s) 791
BsaI GGTCTC 2 cut(s) 854, 995
BsaJI CCNNGG 3 cut(s) 627, 690, 864
BsaWI WCCGGW 2 cut(s) 65, 433
BsaXI ACNNNNNCTCC 8 cut(s) 441, 471, 695, 725, 728, 758, 905, 935
Bsc4I CCNNNNNNNGG 5 cut(s) 460, 613, 616, 754, 910
Bse118I RCCGGY 3 cut(s) 377, 562, 763
Bse1I ACTGG 3 cut(s) 31, 190, 244
BseAI TCCGGA 1 cut(s) 433
BseBI CCWGG 4 cut(s) 294, 305, 461, 692
BseDI CCNNGG 3 cut(s) 627, 690, 864
BseGI GGATG 3 cut(s) 94, 116, 488
BseLI CCNNNNNNNGG 5 cut(s) 460, 613, 616, 754, 910
BseMII CTCAG 3 cut(s) 91, 255, 430
BseNI ACTGG 3 cut(s) 31, 190, 244
BseRI GAGGAG 2 cut(s) 211, 908
BseSI GKGCMC 4 cut(s) 506, 691, 716, 964
BseXI GCAGC 7 cut(s) 25, 373, 413, 451, 458, 644, 893
BseYI CCCAGC 3 cut(s) 9, 340, 551
BsgI GTGCAG 1 cut(s) 927
Bsh1236I CGCG 3 cut(s) 522, 752, 866
BshFI GGCC 7 cut(s) 57, 323, 381, 626, 689, 902, 962
BshNI GGYRCC 1 cut(s) 760
BsiHKAI GWGCWC 3 cut(s) 393, 411, 716
BsiHKCI CYCGRG 1 cut(s) 798
BsiSI CCGG 8 cut(s) 66, 378, 434, 497, 563, 627, 764, 887
BslFI GGGAC 2 cut(s) 461, 730
BslI CCNNNNNNNGG 5 cut(s) 460, 613, 616, 754, 910
BsmAI GTCTC 3 cut(s) 644, 854, 995
BsmBI CGTCTC 1 cut(s) 644
BsmFI GGGAC 2 cut(s) 461, 730
BsnI GGCC 7 cut(s) 57, 323, 381, 626, 689, 902, 962
Bso31I GGTCTC 2 cut(s) 854, 995
BsoBI CYCGRG 1 cut(s) 798
Bsp120I GGGCCC 2 cut(s) 687, 960
Bsp1286I GDGCHC 6 cut(s) 393, 411, 506, 691, 716, 964
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 2 cut(s) 124, 296
BspANI GGCC 7 cut(s) 57, 323, 381, 626, 689, 902, 962
BspCNI CTCAG 3 cut(s) 90, 256, 429
BspEI TCCGGA 1 cut(s) 433
BspFNI CGCG 3 cut(s) 522, 752, 866
BspLI GGNNCC 6 cut(s) 298, 477, 689, 762, 961, 962
BspPI GGATC 3 cut(s) 119, 291, 304
BspQI GCTCTTC 1 cut(s) 398
BspT107I GGYRCC 1 cut(s) 760
BspTI CTTAAG 1 cut(s) 23
BspTNI GGTCTC 2 cut(s) 854, 995
BsrBI CCGCTC 2 cut(s) 155, 685
BsrFI RCCGGY 3 cut(s) 377, 562, 763
BsrI ACTGG 3 cut(s) 31, 190, 244
BssAI RCCGGY 3 cut(s) 377, 562, 763
BssECI CCNNGG 3 cut(s) 627, 690, 864
BssMI GATC 2 cut(s) 124, 296
BssNI GRCGYC 1 cut(s) 791
Bst2UI CCWGG 4 cut(s) 294, 305, 461, 692
Bst4CI ACNGT 4 cut(s) 62, 73, 718, 842
Bst6I CTCTTC 2 cut(s) 398, 987
BstACI GRCGYC 1 cut(s) 791
BstAFI CTTAAG 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 638
BstBAI YACGTR 1 cut(s) 613
BstC8I GCNNGC 4 cut(s) 444, 506, 687, 756
BstDEI CTNAG 4 cut(s) 18, 77, 264, 416
BstDSI CCRYGG 1 cut(s) 864
BstF5I GGATG 3 cut(s) 94, 116, 488
BstFNI CGCG 3 cut(s) 522, 752, 866
BstH2I RGCGCY 3 cut(s) 587, 659, 980
BstHHI GCGC 6 cut(s) 522, 586, 658, 754, 848, 979
BstKTI GATC 2 cut(s) 127, 299
BstMAI GTCTC 3 cut(s) 644, 854, 995
BstMBI GATC 2 cut(s) 124, 296
BstNI CCWGG 4 cut(s) 294, 305, 461, 692
BstSCI CCNGG 6 cut(s) 292, 303, 459, 495, 626, 690
BstSLI GKGCMC 4 cut(s) 506, 691, 716, 964
BstUI CGCG 3 cut(s) 522, 752, 866
BstV1I GCAGC 7 cut(s) 25, 373, 413, 451, 458, 644, 893
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BsuI GTATCC 1 cut(s) 664
BsuRI GGCC 7 cut(s) 57, 323, 381, 626, 689, 902, 962
BtgI CCRYGG 1 cut(s) 864
BtsCI GGATG 3 cut(s) 94, 116, 488
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 4 cut(s) 58, 251, 714, 915
Cac8I GCNNGC 4 cut(s) 444, 506, 687, 756
CaiI CAGNNNCTG 2 cut(s) 460, 638
CfoI GCGC 6 cut(s) 522, 586, 658, 754, 848, 979
Cfr10I RCCGGY 3 cut(s) 377, 562, 763
Cfr13I GGNCC 6 cut(s) 475, 687, 688, 901, 960, 961
Cfr42I CCGCGG 1 cut(s) 867
CseI GACGC 3 cut(s) 323, 409, 624
Csp6I GTAC 1 cut(s) 63
CviAII CATG 2 cut(s) 367, 398
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 4 cut(s) 18, 77, 264, 416
DpnI GATC 2 cut(s) 126, 298
DpnII GATC 2 cut(s) 124, 296
DraIII CACNNNGTG 1 cut(s) 246
EaeI YGGCCR 2 cut(s) 55, 321
Eam1104I CTCTTC 2 cut(s) 398, 987
EarI CTCTTC 2 cut(s) 398, 987
EciI GGCGGA 5 cut(s) 611, 695, 737, 749, 905
Ecl136II GAGCTC 2 cut(s) 391, 409
Eco24I GRGCYC 4 cut(s) 393, 411, 691, 964
Eco31I GGTCTC 2 cut(s) 854, 995
Eco47I GGWCC 1 cut(s) 475
Eco53kI GAGCTC 2 cut(s) 391, 409
Eco57I CTGAAG 1 cut(s) 873
Eco72I CACGTG 1 cut(s) 613
Eco88I CYCGRG 1 cut(s) 798
EcoICRI GAGCTC 2 cut(s) 391, 409
EcoO109I RGGNCCY 2 cut(s) 688, 960
EcoRII CCWGG 4 cut(s) 292, 303, 459, 690
EcoT38I GRGCYC 4 cut(s) 393, 411, 691, 964
Esp3I CGTCTC 1 cut(s) 644
FaeI CATG 2 cut(s) 370, 401
FaiI YATR 5 cut(s) 326, 368, 399, 836, 838
FaqI GGGAC 2 cut(s) 461, 730
FatI CATG 2 cut(s) 366, 397
FauI CCCGC 4 cut(s) 160, 513, 515, 678
FokI GGATG 3 cut(s) 81, 103, 475
FriOI GRGCYC 4 cut(s) 393, 411, 691, 964
GlaI GCGC 6 cut(s) 521, 585, 657, 753, 847, 978
GsaI CCCAGC 3 cut(s) 13, 344, 555
GsuI CTGGAG 4 cut(s) 437, 680, 686, 722
HaeII RGCGCY 3 cut(s) 587, 659, 980
HaeIII GGCC 7 cut(s) 57, 323, 381, 626, 689, 902, 962
HapII CCGG 8 cut(s) 66, 378, 434, 497, 563, 627, 764, 887
HgaI GACGC 3 cut(s) 323, 409, 624
HhaI GCGC 6 cut(s) 522, 586, 658, 754, 848, 979
Hin1I GRCGYC 1 cut(s) 791
Hin1II CATG 2 cut(s) 370, 401
Hin6I GCGC 6 cut(s) 520, 584, 656, 752, 846, 977
HinP1I GCGC 6 cut(s) 520, 584, 656, 752, 846, 977
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 4 cut(s) 48, 203, 209, 266
HpaII CCGG 8 cut(s) 66, 378, 434, 497, 563, 627, 764, 887
HphI GGTGA 5 cut(s) 232, 261, 751, 778, 784
Hpy166II GTNNAC 1 cut(s) 714
Hpy188I TCNGA 5 cut(s) 172, 208, 301, 493, 853
Hpy188III TCNNGA 3 cut(s) 434, 649, 701
Hpy8I GTNNAC 1 cut(s) 714
Hpy99I CGWCG 2 cut(s) 425, 796
HpyAV CCTTC 6 cut(s) 147, 168, 719, 799, 942, 967
HpyCH4III ACNGT 4 cut(s) 62, 73, 718, 842
HpyCH4IV ACGT 2 cut(s) 612, 791
HpyCH4V TGCA 3 cut(s) 401, 714, 908
HpyF3I CTNAG 4 cut(s) 18, 77, 264, 416
HpySE526I ACGT 2 cut(s) 612, 791
Hsp92I GRCGYC 1 cut(s) 791
Hsp92II CATG 2 cut(s) 370, 401
HspAI GCGC 6 cut(s) 520, 584, 656, 752, 846, 977
Kpn2I TCCGGA 1 cut(s) 433
KspI CCGCGG 1 cut(s) 867
Kzo9I GATC 2 cut(s) 124, 296
LguI GCTCTTC 1 cut(s) 398
LmnI GCTCC 8 cut(s) 160, 414, 436, 462, 661, 682, 889, 984
Lsp1109I GCAGC 7 cut(s) 25, 373, 413, 451, 458, 644, 893
LweI GCATC 2 cut(s) 507, 857
MaeII ACGT 2 cut(s) 612, 791
MaeIII GTNAC 1 cut(s) 267
MalI GATC 2 cut(s) 126, 298
MbiI CCGCTC 2 cut(s) 155, 685
MboI GATC 2 cut(s) 124, 296
MboII GAAGA 6 cut(s) 43, 207, 385, 866, 1001, 1004
MflI RGATCY 1 cut(s) 296
MhlI GDGCHC 6 cut(s) 393, 411, 506, 691, 716, 964
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 5 cut(s) 147, 251, 512, 535, 965
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 2 cut(s) 197, 275
MmeI TCCRAC 6 cut(s) 125, 195, 324, 436, 516, 1006
Mox20I TGGCCA 1 cut(s) 323
MroI TCCGGA 1 cut(s) 433
MscI TGGCCA 1 cut(s) 323
MseI TTAA 2 cut(s) 24, 707
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 866
MspCI CTTAAG 1 cut(s) 23
MspI CCGG 8 cut(s) 66, 378, 434, 497, 563, 627, 764, 887
MspR9I CCNGG 6 cut(s) 294, 305, 461, 497, 628, 692
MvaI CCWGG 4 cut(s) 294, 305, 461, 692
MvnI CGCG 3 cut(s) 522, 752, 866
NciI CCSGG 2 cut(s) 497, 628
NdeII GATC 2 cut(s) 124, 296
NlaIII CATG 2 cut(s) 370, 401
NlaIV GGNNCC 6 cut(s) 298, 477, 689, 762, 961, 962
NmuCI GTSAC 1 cut(s) 267
PciSI GCTCTTC 1 cut(s) 398
PfeI GAWTC 2 cut(s) 48, 209
PflMI CCANNNNNTGG 2 cut(s) 460, 754
PfoI TCCNGGA 1 cut(s) 459
PleI GAGTC 2 cut(s) 197, 274
PmaCI CACGTG 1 cut(s) 613
PmlI CACGTG 1 cut(s) 613
PpsI GAGTC 2 cut(s) 197, 274
Ppu21I YACGTR 1 cut(s) 613
Psp124BI GAGCTC 2 cut(s) 393, 411
Psp6I CCWGG 4 cut(s) 292, 303, 459, 690
PspCI CACGTG 1 cut(s) 613
PspFI CCCAGC 3 cut(s) 9, 340, 551
PspGI CCWGG 4 cut(s) 292, 303, 459, 690
PspN4I GGNNCC 6 cut(s) 298, 477, 689, 762, 961, 962
PspOMI GGGCCC 2 cut(s) 687, 960
PspPI GGNCC 6 cut(s) 475, 687, 688, 901, 960, 961
PstNI CAGNNNCTG 2 cut(s) 460, 638
PsuI RGATCY 1 cut(s) 296
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SacI GAGCTC 2 cut(s) 393, 411
SacII CCGCGG 1 cut(s) 867
SapI GCTCTTC 1 cut(s) 398
SaqAI TTAA 2 cut(s) 24, 707
Sau3AI GATC 2 cut(s) 124, 296
Sau96I GGNCC 6 cut(s) 475, 687, 688, 901, 960, 961
SchI GAGTC 2 cut(s) 197, 275
ScrFI CCNGG 6 cut(s) 294, 305, 461, 497, 628, 692
SduI GDGCHC 6 cut(s) 393, 411, 506, 691, 716, 964
SfaNI GCATC 2 cut(s) 507, 857
Sfr303I CCGCGG 1 cut(s) 867
SgrBI CCGCGG 1 cut(s) 867
SinI GGWCC 1 cut(s) 475
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 5 cut(s) 147, 251, 512, 535, 965
SstI GAGCTC 2 cut(s) 393, 411
StyD4I CCNGG 6 cut(s) 292, 303, 459, 495, 626, 690
TaaI ACNGT 4 cut(s) 62, 73, 718, 842
TaiI ACGT 2 cut(s) 615, 794
TaqI TCGA 3 cut(s) 161, 194, 648
TasI AATT 5 cut(s) 147, 251, 512, 535, 965
TauI GCSGC 7 cut(s) 352, 355, 358, 361, 680, 698, 734
TfiI GAWTC 2 cut(s) 48, 209
Tru1I TTAA 2 cut(s) 24, 707
Tru9I TTAA 2 cut(s) 24, 707
TscAI CASTG 4 cut(s) 65, 251, 721, 915
TseFI GTSAC 1 cut(s) 267
TseI GCWGC 7 cut(s) 13, 361, 401, 439, 446, 632, 881
Tsp45I GTSAC 1 cut(s) 267
TspRI CASTG 4 cut(s) 65, 251, 721, 915
Van91I CCANNNNNTGG 2 cut(s) 460, 754
Vha464I CTTAAG 1 cut(s) 23
VneI GTGCAC 1 cut(s) 712
VpaK11BI GGWCC 1 cut(s) 475
XapI RAATTY 2 cut(s) 251, 535
XcmI CCANNNNNNNNNTGG 1 cut(s) 290
ZraI GACGTC 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.