Rh6DG458000

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0017188
Physical Location & Seq
Reverse (-)
62810343 .. 62811344
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG458000.1

Sequence Viewer

Length: 924 bp
ATGAGAACCCAGCAGCCTAAGCTTAAGACCCAGTTTTTCTCTTGTGGATTCTTCGGCCACTGTACCGGAACAGTCCTCAGCCCCACCACGCCTCATCCTCCAACTCTCCCTTTCTCATCCACCGATCCATTACCACCTTCGTTGTCAATTGCCGCTCCTTCAACACAATCCGACCCCCTAACCCACCACCAGTCGAAGCCCGACTCCGAATCATCTTCCTCCTCAACCTCACAGAGCTTCACCCAGTGGAAATTCCCTCTCCCTGAGTCACCCATTCTCTCCCACACACAACCTGGATCCGACCAGGATTTTGACGCTGTGGCCATATTTCAGTCCAGCCCAGCGCCGCCGCCGCCGCCCATGTCCTCCACCGGCCTCCAAGAGCTCTTCCATGCAGCAGAGCTCCAACTCAGCATCGGGTCATTTCCGGAGCAGCTCGCAGCACTCCAGCTCCTGGAACGCTCTCTGGTCCCCTACCCGCCATCCGACCCGGAGTGCCCGCCCGAATTGATGCGCGGGTTGGTGCGAAATTTGAAAAACAAAGCGGGGGCAAAACCGGCAACGAAAGTGTTGTTGGCGCTCTGTTTGGCGGAGGCTAACCGCCACGTGGCGGTTGAGGCCGGGGCAGCGTCTGCGGTGGTCGAGACGGCGCTGGAGCTGGAGGATACGGCGGCGGAGCGGGCCCTGGCGGCTCTGGAGTTAATGACGTCGGCTCGGGGGAAGGAATACGCAATAGGGGTGTTGGCGGTTATATACGGTGGCGCATCTGAAGATGAGTCCGCGGAAGCGGTTTCGGCAGCTCCGGCGGAGGAGGTGGCCCGTGCAGTGGAGTTGGCGTTGAAAGGGGATTGTAGTGGTAGGGGAAGGAGGAAAGGGGCCCAATTATTGAAGGCGCTTCAACCAGAAGAAGAGAAAGAGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

32.43

Weight (kDa)

5.08

Isoelectric Point (pI)

64.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 170 - 237 1.5e-06 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017188)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11550
fragaria_vesca FvH4_2g35860
malus_domestica MD15G1095700.v1.1
prunus_persica Prupe.1G450700_v2.0.a1
pyrus_communis pycom15g08800
rosa_chinensis RchiOBHm_Chr6g0305961
rosa_laevigata RLG00000010842
rosa_multiflora Rmu_sc0001809.1_g000055
rosa_rugosa Rorug06G0345700
rosa_samantha Rh6AG457500 Rh6BG443600 Rh6DG458000
rosa_wichuraiana Rw6G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 710
AccB7I CCANNNNNTGG 1 cut(s) 454
AccBSI CCGCTC 2 cut(s) 155, 679
AccII CGCG 2 cut(s) 516, 782
AccIII TCCGGA 1 cut(s) 427
AclWI GGATC 3 cut(s) 119, 291, 304
AcoI YGGCCR 2 cut(s) 55, 321
AcsI RAATTY 2 cut(s) 251, 529
AcuI CTGAAG 1 cut(s) 789
AcvI CACGTG 1 cut(s) 607
AcyI GRCGYC 1 cut(s) 707
AdeI CACNNNGTG 1 cut(s) 246
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 4 cut(s) 454, 607, 610, 826
AflII CTTAAG 1 cut(s) 23
AgsI TTSAA 5 cut(s) 162, 535, 841, 889, 899
AjnI CCWGG 4 cut(s) 292, 303, 453, 684
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AluBI AGCT 8 cut(s) 22, 237, 385, 403, 436, 451, 658, 800
AluI AGCT 8 cut(s) 22, 237, 385, 403, 436, 451, 658, 800
Alw21I GWGCWC 2 cut(s) 387, 405
Alw26I GTCTC 2 cut(s) 638, 911
AlwI GGATC 3 cut(s) 119, 291, 304
AlwNI CAGNNNCTG 2 cut(s) 454, 632
Ama87I CYCGRG 1 cut(s) 714
Aor13HI TCCGGA 1 cut(s) 427
AoxI GGCC 7 cut(s) 55, 321, 373, 618, 681, 816, 876
ApaI GGGCCC 2 cut(s) 685, 880
ApeKI GCWGC 6 cut(s) 13, 395, 433, 440, 626, 797
ApoI RAATTY 2 cut(s) 251, 529
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
AspLEI GCGC 6 cut(s) 346, 516, 580, 652, 764, 895
AspS9I GGNCC 6 cut(s) 469, 681, 682, 817, 876, 877
AsuC2I CCSGG 2 cut(s) 491, 622
AsuHPI GGTGA 2 cut(s) 232, 261
AvaI CYCGRG 1 cut(s) 714
AvaII GGWCC 1 cut(s) 469
BaeGI GKGCMC 3 cut(s) 500, 685, 880
BalI TGGCCA 1 cut(s) 323
BamHI GGATCC 1 cut(s) 296
BanII GRGCYC 4 cut(s) 387, 405, 685, 880
BbrPI CACGTG 1 cut(s) 607
Bbv12I GWGCWC 2 cut(s) 387, 405
BbvCI CCTCAGC 1 cut(s) 77
BbvI GCAGC 6 cut(s) 25, 407, 445, 452, 638, 809
BccI CCATC 1 cut(s) 490
BceAI ACGGC 2 cut(s) 663, 684
BciT130I CCWGG 4 cut(s) 294, 305, 455, 686
BciVI GTATCC 1 cut(s) 658
BcnI CCSGG 2 cut(s) 491, 622
BcoDI GTCTC 2 cut(s) 638, 911
BfoI RGCGCY 4 cut(s) 347, 581, 653, 896
BfrI CTTAAG 1 cut(s) 23
BfuI GTATCC 1 cut(s) 658
BglI GCCNNNNNGGC 1 cut(s) 689
Bme1390I CCNGG 6 cut(s) 294, 305, 455, 491, 622, 686
Bme18I GGWCC 1 cut(s) 469
BmeT110I CYCGRG 1 cut(s) 714
BmgT120I GGNCC 6 cut(s) 469, 681, 682, 817, 876, 877
BmiI GGNNCC 5 cut(s) 298, 471, 683, 877, 878
BmrFI CCNGG 6 cut(s) 294, 305, 455, 491, 622, 686
BmrI ACTGGG 2 cut(s) 25, 238
BmsI GCATC 3 cut(s) 423, 501, 773
BmuI ACTGGG 2 cut(s) 25, 238
BpmI CTGGAG 4 cut(s) 431, 674, 680, 716
Bpu10I CCTNAGC 2 cut(s) 18, 77
BpuMI CCSGG 2 cut(s) 491, 622
BsaAI YACGTR 1 cut(s) 607
BsaHI GRCGYC 1 cut(s) 707
BsaI GGTCTC 1 cut(s) 911
BsaJI CCNNGG 3 cut(s) 621, 684, 780
BsaWI WCCGGW 2 cut(s) 65, 427
BsaXI ACNNNNNCTCC 4 cut(s) 435, 465, 821, 851
Bsc4I CCNNNNNNNGG 4 cut(s) 454, 607, 610, 826
Bse118I RCCGGY 2 cut(s) 371, 556
Bse1I ACTGG 3 cut(s) 31, 190, 244
BseAI TCCGGA 1 cut(s) 427
BseBI CCWGG 4 cut(s) 294, 305, 455, 686
BseDI CCNNGG 3 cut(s) 621, 684, 780
BseGI GGATG 3 cut(s) 94, 116, 482
BseLI CCNNNNNNNGG 4 cut(s) 454, 607, 610, 826
BseMII CTCAG 3 cut(s) 91, 255, 424
BseNI ACTGG 3 cut(s) 31, 190, 244
BseRI GAGGAG 2 cut(s) 211, 824
BseSI GKGCMC 3 cut(s) 500, 685, 880
BseXI GCAGC 6 cut(s) 25, 407, 445, 452, 638, 809
BseYI CCCAGC 2 cut(s) 9, 340
BsgI GTGCAG 1 cut(s) 843
Bsh1236I CGCG 2 cut(s) 516, 782
BshFI GGCC 7 cut(s) 57, 323, 375, 620, 683, 818, 878
BsiHKAI GWGCWC 2 cut(s) 387, 405
BsiHKCI CYCGRG 1 cut(s) 714
BsiSI CCGG 7 cut(s) 66, 372, 428, 491, 557, 621, 803
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 4 cut(s) 454, 607, 610, 826
BsmAI GTCTC 2 cut(s) 638, 911
BsmBI CGTCTC 1 cut(s) 638
BsmFI GGGAC 1 cut(s) 455
BsnI GGCC 7 cut(s) 57, 323, 375, 620, 683, 818, 878
Bso31I GGTCTC 1 cut(s) 911
BsoBI CYCGRG 1 cut(s) 714
Bsp120I GGGCCC 2 cut(s) 681, 876
Bsp1286I GDGCHC 5 cut(s) 387, 405, 500, 685, 880
Bsp13I TCCGGA 1 cut(s) 427
Bsp143I GATC 2 cut(s) 124, 296
BspANI GGCC 7 cut(s) 57, 323, 375, 620, 683, 818, 878
BspCNI CTCAG 3 cut(s) 90, 256, 423
BspEI TCCGGA 1 cut(s) 427
BspFNI CGCG 2 cut(s) 516, 782
BspLI GGNNCC 5 cut(s) 298, 471, 683, 877, 878
BspPI GGATC 3 cut(s) 119, 291, 304
BspQI GCTCTTC 1 cut(s) 392
BspTI CTTAAG 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 911
BsrBI CCGCTC 2 cut(s) 155, 679
BsrFI RCCGGY 2 cut(s) 371, 556
BsrI ACTGG 3 cut(s) 31, 190, 244
BssAI RCCGGY 2 cut(s) 371, 556
BssECI CCNNGG 3 cut(s) 621, 684, 780
BssMI GATC 2 cut(s) 124, 296
BssNI GRCGYC 1 cut(s) 707
Bst2UI CCWGG 4 cut(s) 294, 305, 455, 686
Bst4CI ACNGT 3 cut(s) 62, 73, 758
Bst6I CTCTTC 2 cut(s) 392, 903
BstACI GRCGYC 1 cut(s) 707
BstAFI CTTAAG 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 632
BstBAI YACGTR 1 cut(s) 607
BstC8I GCNNGC 3 cut(s) 438, 500, 681
BstDEI CTNAG 4 cut(s) 18, 77, 264, 410
BstDSI CCRYGG 1 cut(s) 780
BstF5I GGATG 3 cut(s) 94, 116, 482
BstFNI CGCG 2 cut(s) 516, 782
BstH2I RGCGCY 4 cut(s) 347, 581, 653, 896
BstHHI GCGC 6 cut(s) 346, 516, 580, 652, 764, 895
BstKTI GATC 2 cut(s) 127, 299
BstMAI GTCTC 2 cut(s) 638, 911
BstMBI GATC 2 cut(s) 124, 296
BstNI CCWGG 4 cut(s) 294, 305, 455, 686
BstSCI CCNGG 6 cut(s) 292, 303, 453, 489, 620, 684
BstSLI GKGCMC 3 cut(s) 500, 685, 880
BstUI CGCG 2 cut(s) 516, 782
BstV1I GCAGC 6 cut(s) 25, 407, 445, 452, 638, 809
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BsuI GTATCC 1 cut(s) 658
BsuRI GGCC 7 cut(s) 57, 323, 375, 620, 683, 818, 878
BtgI CCRYGG 1 cut(s) 780
BtsCI GGATG 3 cut(s) 94, 116, 482
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 3 cut(s) 58, 251, 831
Cac8I GCNNGC 3 cut(s) 438, 500, 681
CaiI CAGNNNCTG 2 cut(s) 454, 632
CfoI GCGC 6 cut(s) 346, 516, 580, 652, 764, 895
Cfr10I RCCGGY 2 cut(s) 371, 556
Cfr13I GGNCC 6 cut(s) 469, 681, 682, 817, 876, 877
Cfr42I CCGCGG 1 cut(s) 783
CseI GACGC 2 cut(s) 323, 618
Csp6I GTAC 1 cut(s) 63
CspCI CAANNNNNGTGG 2 cut(s) 123, 158
CviAII CATG 2 cut(s) 361, 392
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 4 cut(s) 18, 77, 264, 410
DpnI GATC 2 cut(s) 126, 298
DpnII GATC 2 cut(s) 124, 296
DraIII CACNNNGTG 1 cut(s) 246
EaeI YGGCCR 2 cut(s) 55, 321
Eam1104I CTCTTC 2 cut(s) 392, 903
EarI CTCTTC 2 cut(s) 392, 903
EciI GGCGGA 3 cut(s) 605, 689, 821
Ecl136II GAGCTC 2 cut(s) 385, 403
Eco24I GRGCYC 4 cut(s) 387, 405, 685, 880
Eco31I GGTCTC 1 cut(s) 911
Eco47I GGWCC 1 cut(s) 469
Eco53kI GAGCTC 2 cut(s) 385, 403
Eco57I CTGAAG 1 cut(s) 789
Eco72I CACGTG 1 cut(s) 607
Eco88I CYCGRG 1 cut(s) 714
EcoICRI GAGCTC 2 cut(s) 385, 403
EcoO109I RGGNCCY 2 cut(s) 682, 876
EcoRII CCWGG 4 cut(s) 292, 303, 453, 684
EcoT38I GRGCYC 4 cut(s) 387, 405, 685, 880
Esp3I CGTCTC 1 cut(s) 638
FaeI CATG 2 cut(s) 364, 395
FaiI YATR 5 cut(s) 326, 362, 393, 752, 754
FaqI GGGAC 1 cut(s) 455
FatI CATG 2 cut(s) 360, 391
FauI CCCGC 5 cut(s) 486, 507, 509, 538, 672
FokI GGATG 3 cut(s) 81, 103, 469
FriOI GRGCYC 4 cut(s) 387, 405, 685, 880
GlaI GCGC 6 cut(s) 345, 515, 579, 651, 763, 894
GsaI CCCAGC 2 cut(s) 13, 344
GsuI CTGGAG 4 cut(s) 431, 674, 680, 716
HaeII RGCGCY 4 cut(s) 347, 581, 653, 896
HaeIII GGCC 7 cut(s) 57, 323, 375, 620, 683, 818, 878
HapII CCGG 7 cut(s) 66, 372, 428, 491, 557, 621, 803
HgaI GACGC 2 cut(s) 323, 618
HhaI GCGC 6 cut(s) 346, 516, 580, 652, 764, 895
Hin1I GRCGYC 1 cut(s) 707
Hin1II CATG 2 cut(s) 364, 395
Hin6I GCGC 6 cut(s) 344, 514, 578, 650, 762, 893
HinP1I GCGC 6 cut(s) 344, 514, 578, 650, 762, 893
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 5 cut(s) 48, 203, 209, 266, 776
HpaII CCGG 7 cut(s) 66, 372, 428, 491, 557, 621, 803
HphI GGTGA 2 cut(s) 232, 261
Hpy188I TCNGA 5 cut(s) 172, 208, 301, 487, 769
Hpy188III TCNNGA 3 cut(s) 428, 643, 695
Hpy99I CGWCG 1 cut(s) 712
HpyAV CCTTC 5 cut(s) 147, 168, 715, 858, 883
HpyCH4III ACNGT 3 cut(s) 62, 73, 758
HpyCH4IV ACGT 2 cut(s) 606, 707
HpyCH4V TGCA 2 cut(s) 395, 824
HpyF3I CTNAG 4 cut(s) 18, 77, 264, 410
HpySE526I ACGT 2 cut(s) 606, 707
Hsp92I GRCGYC 1 cut(s) 707
Hsp92II CATG 2 cut(s) 364, 395
HspAI GCGC 6 cut(s) 344, 514, 578, 650, 762, 893
Kpn2I TCCGGA 1 cut(s) 427
KspI CCGCGG 1 cut(s) 783
Kzo9I GATC 2 cut(s) 124, 296
LguI GCTCTTC 1 cut(s) 392
LmnI GCTCC 7 cut(s) 160, 408, 430, 456, 655, 676, 805
Lsp1109I GCAGC 6 cut(s) 25, 407, 445, 452, 638, 809
LweI GCATC 3 cut(s) 423, 501, 773
MaeII ACGT 2 cut(s) 606, 707
MaeIII GTNAC 1 cut(s) 267
MalI GATC 2 cut(s) 126, 298
MbiI CCGCTC 2 cut(s) 155, 679
MboI GATC 2 cut(s) 124, 296
MboII GAAGA 6 cut(s) 43, 207, 379, 782, 917, 920
MfeI CAATTG 1 cut(s) 147
MflI RGATCY 1 cut(s) 296
MhlI GDGCHC 5 cut(s) 387, 405, 500, 685, 880
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 5 cut(s) 147, 251, 506, 529, 881
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 3 cut(s) 197, 275, 785
MmeI TCCRAC 5 cut(s) 125, 195, 324, 430, 510
Mox20I TGGCCA 1 cut(s) 323
MroI TCCGGA 1 cut(s) 427
MscI TGGCCA 1 cut(s) 323
MseI TTAA 2 cut(s) 24, 701
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 782
MspCI CTTAAG 1 cut(s) 23
MspI CCGG 7 cut(s) 66, 372, 428, 491, 557, 621, 803
MspR9I CCNGG 6 cut(s) 294, 305, 455, 491, 622, 686
MunI CAATTG 1 cut(s) 147
MvaI CCWGG 4 cut(s) 294, 305, 455, 686
MvnI CGCG 2 cut(s) 516, 782
NciI CCSGG 2 cut(s) 491, 622
NdeII GATC 2 cut(s) 124, 296
NlaIII CATG 2 cut(s) 364, 395
NlaIV GGNNCC 5 cut(s) 298, 471, 683, 877, 878
NmuCI GTSAC 1 cut(s) 267
PciSI GCTCTTC 1 cut(s) 392
PfeI GAWTC 2 cut(s) 48, 209
PflMI CCANNNNNTGG 1 cut(s) 454
PfoI TCCNGGA 1 cut(s) 453
PleI GAGTC 3 cut(s) 197, 274, 784
PmaCI CACGTG 1 cut(s) 607
PmlI CACGTG 1 cut(s) 607
PpsI GAGTC 3 cut(s) 197, 274, 784
Ppu21I YACGTR 1 cut(s) 607
Psp124BI GAGCTC 2 cut(s) 387, 405
Psp6I CCWGG 4 cut(s) 292, 303, 453, 684
PspCI CACGTG 1 cut(s) 607
PspFI CCCAGC 2 cut(s) 9, 340
PspGI CCWGG 4 cut(s) 292, 303, 453, 684
PspN4I GGNNCC 5 cut(s) 298, 471, 683, 877, 878
PspOMI GGGCCC 2 cut(s) 681, 876
PspPI GGNCC 6 cut(s) 469, 681, 682, 817, 876, 877
PstNI CAGNNNCTG 2 cut(s) 454, 632
PsuI RGATCY 1 cut(s) 296
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SacI GAGCTC 2 cut(s) 387, 405
SacII CCGCGG 1 cut(s) 783
SapI GCTCTTC 1 cut(s) 392
SaqAI TTAA 2 cut(s) 24, 701
Sau3AI GATC 2 cut(s) 124, 296
Sau96I GGNCC 6 cut(s) 469, 681, 682, 817, 876, 877
SchI GAGTC 3 cut(s) 197, 275, 785
ScrFI CCNGG 6 cut(s) 294, 305, 455, 491, 622, 686
SduI GDGCHC 5 cut(s) 387, 405, 500, 685, 880
SfaNI GCATC 3 cut(s) 423, 501, 773
Sfr303I CCGCGG 1 cut(s) 783
SgrBI CCGCGG 1 cut(s) 783
SinI GGWCC 1 cut(s) 469
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 5 cut(s) 147, 251, 506, 529, 881
SstI GAGCTC 2 cut(s) 387, 405
StyD4I CCNGG 6 cut(s) 292, 303, 453, 489, 620, 684
TaaI ACNGT 3 cut(s) 62, 73, 758
TaiI ACGT 2 cut(s) 609, 710
TaqI TCGA 2 cut(s) 194, 642
TasI AATT 5 cut(s) 147, 251, 506, 529, 881
TauI GCSGC 7 cut(s) 155, 349, 352, 355, 358, 674, 692
TfiI GAWTC 2 cut(s) 48, 209
Tru1I TTAA 2 cut(s) 24, 701
Tru9I TTAA 2 cut(s) 24, 701
TscAI CASTG 3 cut(s) 65, 251, 831
TseFI GTSAC 1 cut(s) 267
TseI GCWGC 6 cut(s) 13, 395, 433, 440, 626, 797
Tsp45I GTSAC 1 cut(s) 267
TspRI CASTG 3 cut(s) 65, 251, 831
Van91I CCANNNNNTGG 1 cut(s) 454
Vha464I CTTAAG 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 2 cut(s) 251, 529
XcmI CCANNNNNNNNNTGG 1 cut(s) 290
ZraI GACGTC 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.