Prupe.1G450700_v2.0.a1

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017188
Physical Location & Seq
Forward (+)
37969121 .. 37970134
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G450700.1

Sequence Viewer

Length: 861 bp
ATGAAAGCCCAGCATCCCAAGATCAAAACCCAGCTCTTCTCTTGCGGGTTCTTCCGCCATTGCACCCGGACCGTCCTCAGCCCCACAACCCCTCACCCTCCACCTCTCCCCTTCTCATCCACCGACCCATTACCACCTTCACTGTCATTAGATTCATCACCTCCCGCTCCAACACAACCCGACCCGCCAACCCACCATCCCTCCAAGCCTGAATCCGAGTCCTCTTCCTCCTCAACTTCCCAAAGCTTCACCCACGTCGGGTCACACCCGGAGCAGCTGGCGGCTCTCCAACTCTTAGAACGCTCCCTCGTCCCCTACCCACCACCTGACCCGGTTTGCCCACCCGAATTGATGCGCGGGTTGGTGCGAAATTTGAAAAACAAAGCGGGGGCTAAAGCGGCAACGAAAATTCTGTTAGCCCTCTGCCTGGCGGAGGGCAACCGCCACGTGGCGGTGGACGAGGGTGCGGCGGCCGCCGTGGTAGAGACGGCGCTGGAGCTGGAGGCTGCGTCGGCAGAGCGGGCACTCGCGGCGCTGGAGCTCATGTGTACTGTGGCGGAGGGGGCCGCGGCGGTGAGGTCCCACGCACTGGCGGTGCCGATTATGGTGATGATGATGGGGCGGACATCGGCGCGGGGGAAGGAGTATGCTATCGGCGTGTTGGCGGTGATTTATAGCGGTGCGTACGGGGAAGAAGAGGCTGCGGAGGCTGTGGCGGCGGCACCGGCTGAGGAGGTGGCGCGTGCGGTGGAGCTGGCGTTGAAAGGGGATTGTAGTGGCAGGGGGAGGAGGAAAGGAGCCCAGCTATTGAAGGCGCTTCAAGACCCCCTTCAAGAGAGGGAGAGTTTAGACCCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

30.09

Weight (kDa)

6.32

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017188)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11550
fragaria_vesca FvH4_2g35860
malus_domestica MD15G1095700.v1.1
prunus_persica Prupe.1G450700_v2.0.a1
pyrus_communis pycom15g08800
rosa_chinensis RchiOBHm_Chr6g0305961
rosa_laevigata RLG00000010842
rosa_multiflora Rmu_sc0001809.1_g000055
rosa_rugosa Rorug06G0345700
rosa_samantha Rh6AG457500 Rh6BG443600 Rh6DG458000
rosa_wichuraiana Rw6G039910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 595, 721
AccB7I CCANNNNNTGG 1 cut(s) 589
AccBSI CCGCTC 2 cut(s) 167, 520
AccII CGCG 5 cut(s) 357, 530, 569, 634, 742
AcoI YGGCCR 1 cut(s) 471
AcsI RAATTY 2 cut(s) 370, 408
AcvI CACGTG 1 cut(s) 448
AfaI GTAC 2 cut(s) 550, 686
AfiI CCNNNNNNNGG 6 cut(s) 258, 427, 433, 448, 451, 589
AgsI TTSAA 5 cut(s) 376, 763, 811, 821, 833
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 7 cut(s) 34, 246, 277, 499, 541, 754, 805
AluI AGCT 7 cut(s) 34, 246, 277, 499, 541, 754, 805
Alw21I GWGCWC 1 cut(s) 543
Alw26I GTCTC 1 cut(s) 479
AoxI GGCC 2 cut(s) 471, 564
ApeKI GCWGC 3 cut(s) 274, 506, 701
ApoI RAATTY 2 cut(s) 370, 408
AspLEI GCGC 6 cut(s) 357, 493, 535, 634, 742, 817
AspS9I GGNCC 3 cut(s) 69, 564, 579
AsuC2I CCSGG 3 cut(s) 67, 269, 332
AsuHPI GGTGA 6 cut(s) 86, 150, 241, 586, 619, 679
AvaII GGWCC 2 cut(s) 69, 579
BaeGI GKGCMC 1 cut(s) 526
BanI GGYRCC 2 cut(s) 595, 721
BanII GRGCYC 2 cut(s) 543, 802
BbrPI CACGTG 1 cut(s) 448
Bbv12I GWGCWC 1 cut(s) 543
BbvCI CCTCAGC 2 cut(s) 77, 729
BbvI GCAGC 3 cut(s) 286, 493, 688
BccI CCATC 2 cut(s) 204, 610
BceAI ACGGC 2 cut(s) 461, 504
BciT130I CCWGG 1 cut(s) 428
BcnI CCSGG 3 cut(s) 67, 269, 332
BcoDI GTCTC 1 cut(s) 479
BfoI RGCGCY 3 cut(s) 494, 536, 818
Bme1390I CCNGG 4 cut(s) 67, 269, 332, 428
Bme18I GGWCC 2 cut(s) 69, 579
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 3 cut(s) 69, 564, 579
BmiI GGNNCC 5 cut(s) 565, 581, 597, 723, 799
BmrFI CCNGG 4 cut(s) 67, 269, 332, 428
BmsI GCATC 2 cut(s) 22, 342
BpmI CTGGAG 3 cut(s) 515, 521, 557
Bpu10I CCTNAGC 2 cut(s) 77, 729
BpuMI CCSGG 3 cut(s) 67, 269, 332
BsaAI YACGTR 1 cut(s) 448
BsaJI CCNNGG 2 cut(s) 477, 567
BsaXI ACNNNNNCTCC 8 cut(s) 185, 215, 494, 524, 530, 560, 743, 773
Bsc4I CCNNNNNNNGG 6 cut(s) 258, 427, 433, 448, 451, 589
Bse118I RCCGGY 1 cut(s) 724
Bse1I ACTGG 1 cut(s) 594
Bse3DI GCAATG 1 cut(s) 58
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 2 cut(s) 477, 567
BseGI GGATG 3 cut(s) 13, 116, 196
BseLI CCNNNNNNNGG 6 cut(s) 258, 427, 433, 448, 451, 589
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 2 cut(s) 91, 720
BseNI ACTGG 1 cut(s) 594
BseRI GAGGAG 3 cut(s) 220, 746, 802
BseSI GKGCMC 1 cut(s) 526
BseX3I CGGCCG 1 cut(s) 471
BseXI GCAGC 3 cut(s) 286, 493, 688
BseYI CCCAGC 3 cut(s) 9, 30, 801
Bsh1236I CGCG 5 cut(s) 357, 530, 569, 634, 742
Bsh1285I CGRYCG 1 cut(s) 474
BshFI GGCC 2 cut(s) 473, 566
BshNI GGYRCC 2 cut(s) 595, 721
BsiEI CGRYCG 1 cut(s) 474
BsiHKAI GWGCWC 1 cut(s) 543
BsiSI CCGG 4 cut(s) 67, 269, 332, 725
BsiWI CGTACG 1 cut(s) 684
BslFI GGGAC 2 cut(s) 296, 565
BslI CCNNNNNNNGG 6 cut(s) 258, 427, 433, 448, 451, 589
BsmAI GTCTC 1 cut(s) 479
BsmBI CGTCTC 1 cut(s) 479
BsmFI GGGAC 2 cut(s) 296, 565
BsnI GGCC 2 cut(s) 473, 566
Bsp1286I GDGCHC 3 cut(s) 526, 543, 802
Bsp143I GATC 1 cut(s) 21
BspANI GGCC 2 cut(s) 473, 566
BspCNI CTCAG 2 cut(s) 90, 721
BspFNI CGCG 5 cut(s) 357, 530, 569, 634, 742
BspLI GGNNCC 5 cut(s) 565, 581, 597, 723, 799
BspQI GCTCTTC 1 cut(s) 41
BspT107I GGYRCC 2 cut(s) 595, 721
BsrBI CCGCTC 2 cut(s) 167, 520
BsrDI GCAATG 1 cut(s) 58
BsrFI RCCGGY 1 cut(s) 724
BsrI ACTGG 1 cut(s) 594
BssAI RCCGGY 1 cut(s) 724
BssECI CCNNGG 2 cut(s) 477, 567
BssMI GATC 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 3 cut(s) 73, 144, 553
Bst6I CTCTTC 3 cut(s) 41, 229, 690
BstBAI YACGTR 1 cut(s) 448
BstC8I GCNNGC 4 cut(s) 279, 522, 744, 756
BstDEI CTNAG 3 cut(s) 77, 295, 729
BstDSI CCRYGG 2 cut(s) 477, 567
BstENI CCTNNNNNAGG 1 cut(s) 431
BstF5I GGATG 3 cut(s) 13, 116, 196
BstFNI CGCG 5 cut(s) 357, 530, 569, 634, 742
BstH2I RGCGCY 3 cut(s) 494, 536, 818
BstHHI GCGC 6 cut(s) 357, 493, 535, 634, 742, 817
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 479
BstMBI GATC 1 cut(s) 21
BstMCI CGRYCG 1 cut(s) 474
BstMWI GCNNNNNNNGC 9 cut(s) 398, 473, 512, 521, 530, 563, 707, 716, 725
BstNI CCWGG 1 cut(s) 428
BstSCI CCNGG 4 cut(s) 65, 267, 330, 426
BstSLI GKGCMC 1 cut(s) 526
BstUI CGCG 5 cut(s) 357, 530, 569, 634, 742
BstV1I GCAGC 3 cut(s) 286, 493, 688
BstZI CGGCCG 1 cut(s) 471
BsuRI GGCC 2 cut(s) 473, 566
BtgI CCRYGG 2 cut(s) 477, 567
BtrI CACGTC 1 cut(s) 256
BtsCI GGATG 3 cut(s) 13, 116, 196
BtsIMutI CAGTG 2 cut(s) 140, 587
Cac8I GCNNGC 4 cut(s) 279, 522, 744, 756
CciNI GCGGCCGC 1 cut(s) 471
CfoI GCGC 6 cut(s) 357, 493, 535, 634, 742, 817
Cfr10I RCCGGY 1 cut(s) 724
Cfr13I GGNCC 3 cut(s) 69, 564, 579
Cfr42I CCGCGG 1 cut(s) 570
CpoI CGGWCCG 1 cut(s) 69
CseI GACGC 1 cut(s) 498
Csp6I GTAC 2 cut(s) 549, 685
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CspI CGGWCCG 1 cut(s) 69
CviAII CATG 1 cut(s) 544
CviQI GTAC 2 cut(s) 549, 685
DdeI CTNAG 3 cut(s) 77, 295, 729
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 471
EagI CGGCCG 1 cut(s) 471
Eam1104I CTCTTC 3 cut(s) 41, 229, 690
EarI CTCTTC 3 cut(s) 41, 229, 690
EciI GGCGGA 4 cut(s) 44, 446, 572, 637
Ecl136II GAGCTC 1 cut(s) 541
EclXI CGGCCG 1 cut(s) 471
Eco24I GRGCYC 2 cut(s) 543, 802
Eco47I GGWCC 2 cut(s) 69, 579
Eco52I CGGCCG 1 cut(s) 471
Eco53kI GAGCTC 1 cut(s) 541
Eco72I CACGTG 1 cut(s) 448
EcoICRI GAGCTC 1 cut(s) 541
EcoNI CCTNNNNNAGG 1 cut(s) 431
EcoO109I RGGNCCY 1 cut(s) 579
EcoRII CCWGG 1 cut(s) 426
EcoT38I GRGCYC 2 cut(s) 543, 802
Esp3I CGTCTC 1 cut(s) 479
FaeI CATG 1 cut(s) 547
FaiI YATR 4 cut(s) 545, 605, 648, 675
FalI AAGNNNNNCTT 2 cut(s) 813, 845
FaqI GGGAC 2 cut(s) 296, 565
FatI CATG 1 cut(s) 543
FauI CCCGC 7 cut(s) 38, 172, 192, 350, 379, 513, 627
FokI GGATG 2 cut(s) 103, 183
FriOI GRGCYC 2 cut(s) 543, 802
GlaI GCGC 6 cut(s) 356, 492, 534, 633, 741, 816
GsaI CCCAGC 3 cut(s) 13, 34, 805
GsuI CTGGAG 3 cut(s) 515, 521, 557
HaeII RGCGCY 3 cut(s) 494, 536, 818
HaeIII GGCC 2 cut(s) 473, 566
HapII CCGG 4 cut(s) 67, 269, 332, 725
HgaI GACGC 1 cut(s) 498
HhaI GCGC 6 cut(s) 357, 493, 535, 634, 742, 817
Hin1II CATG 1 cut(s) 547
Hin6I GCGC 6 cut(s) 355, 491, 533, 632, 740, 815
HinP1I GCGC 6 cut(s) 355, 491, 533, 632, 740, 815
HindIII AAGCTT 1 cut(s) 244
HinfI GANTC 3 cut(s) 152, 212, 218
HpaII CCGG 4 cut(s) 67, 269, 332, 725
HphI GGTGA 6 cut(s) 86, 150, 241, 586, 619, 679
Hpy166II GTNNAC 2 cut(s) 457, 549
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 2 cut(s) 821, 833
Hpy8I GTNNAC 2 cut(s) 457, 549
Hpy99I CGWCG 2 cut(s) 260, 514
HpyAV CCTTC 5 cut(s) 121, 147, 634, 805, 839
HpyCH4III ACNGT 3 cut(s) 73, 144, 553
HpyCH4IV ACGT 2 cut(s) 255, 447
HpyCH4V TGCA 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 9 cut(s) 398, 473, 512, 521, 530, 563, 707, 716, 725
HpyF3I CTNAG 3 cut(s) 77, 295, 729
HpySE526I ACGT 2 cut(s) 255, 447
Hsp92II CATG 1 cut(s) 547
HspAI GCGC 6 cut(s) 355, 491, 533, 632, 740, 815
KspI CCGCGG 1 cut(s) 570
Kzo9I GATC 1 cut(s) 21
LguI GCTCTTC 1 cut(s) 41
LmnI GCTCC 7 cut(s) 172, 271, 308, 496, 538, 751, 797
Lsp1109I GCAGC 3 cut(s) 286, 493, 688
LweI GCATC 2 cut(s) 22, 342
MaeII ACGT 2 cut(s) 255, 447
MaeIII GTNAC 1 cut(s) 261
MalI GATC 1 cut(s) 23
MbiI CCGCTC 2 cut(s) 167, 520
MboI GATC 1 cut(s) 21
MboII GAAGA 5 cut(s) 28, 43, 216, 704, 707
MhlI GDGCHC 3 cut(s) 526, 543, 802
MluCI AATT 3 cut(s) 347, 370, 408
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 2 cut(s) 194, 313
MspA1I CMGCKG 2 cut(s) 277, 569
MspI CCGG 4 cut(s) 67, 269, 332, 725
MspR9I CCNGG 4 cut(s) 67, 269, 332, 428
MvaI CCWGG 1 cut(s) 428
MvnI CGCG 5 cut(s) 357, 530, 569, 634, 742
MwoI GCNNNNNNNGC 9 cut(s) 398, 473, 512, 521, 530, 563, 707, 716, 725
NciI CCSGG 3 cut(s) 67, 269, 332
NdeII GATC 1 cut(s) 21
NlaIII CATG 1 cut(s) 547
NlaIV GGNNCC 5 cut(s) 565, 581, 597, 723, 799
NmuCI GTSAC 1 cut(s) 261
NotI GCGGCCGC 1 cut(s) 471
PciSI GCTCTTC 1 cut(s) 41
PfeI GAWTC 2 cut(s) 152, 212
Pfl23II CGTACG 1 cut(s) 684
PflMI CCANNNNNTGG 1 cut(s) 589
PleI GAGTC 1 cut(s) 226
PmaCI CACGTG 1 cut(s) 448
PmlI CACGTG 1 cut(s) 448
PpsI GAGTC 1 cut(s) 226
Ppu21I YACGTR 1 cut(s) 448
PpuMI RGGWCCY 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 543
Psp5II RGGWCCY 1 cut(s) 579
Psp6I CCWGG 1 cut(s) 426
PspCI CACGTG 1 cut(s) 448
PspFI CCCAGC 3 cut(s) 9, 30, 801
PspGI CCWGG 1 cut(s) 426
PspLI CGTACG 1 cut(s) 684
PspN4I GGNNCC 5 cut(s) 565, 581, 597, 723, 799
PspPI GGNCC 3 cut(s) 69, 564, 579
PspPPI RGGWCCY 1 cut(s) 579
PvuII CAGCTG 1 cut(s) 277
RsaI GTAC 2 cut(s) 550, 686
RsaNI GTAC 2 cut(s) 549, 685
Rsr2I CGGWCCG 1 cut(s) 69
RsrII CGGWCCG 1 cut(s) 69
SacI GAGCTC 1 cut(s) 543
SacII CCGCGG 1 cut(s) 570
SapI GCTCTTC 1 cut(s) 41
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 3 cut(s) 69, 564, 579
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 4 cut(s) 67, 269, 332, 428
SduI GDGCHC 3 cut(s) 526, 543, 802
SfaNI GCATC 2 cut(s) 22, 342
Sfr303I CCGCGG 1 cut(s) 570
SgrBI CCGCGG 1 cut(s) 570
SinI GGWCC 2 cut(s) 69, 579
Sse9I AATT 3 cut(s) 347, 370, 408
SstI GAGCTC 1 cut(s) 543
StyD4I CCNGG 4 cut(s) 65, 267, 330, 426
TaaI ACNGT 3 cut(s) 73, 144, 553
TaiI ACGT 2 cut(s) 258, 450
TasI AATT 3 cut(s) 347, 370, 408
TatI WGTACW 1 cut(s) 548
TfiI GAWTC 2 cut(s) 152, 212
TscAI CASTG 2 cut(s) 147, 594
TseFI GTSAC 1 cut(s) 261
TseI GCWGC 3 cut(s) 274, 506, 701
Tsp45I GTSAC 1 cut(s) 261
TspDTI ATGAA 2 cut(s) 17, 144
TspRI CASTG 2 cut(s) 147, 594
Van91I CCANNNNNTGG 1 cut(s) 589
VpaK11BI GGWCC 2 cut(s) 69, 579
XagI CCTNNNNNAGG 1 cut(s) 431
XapI RAATTY 2 cut(s) 370, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.