AT5G11960

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016033
Physical Location & Seq
Reverse (-)
3858428 .. 3861528
3101 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11960.1

Sequence Viewer

Length: 1035 bp
ATGTGGGAATCGATTTGCCTAACGCTTGCGGCCACCGCCGGAAACAATATCGGCAAGGTTCTCCAGAAGAAGGGCACTATTATCCTCCCTCCTCTCTCCCTTAAGCTTAAGGTGTTAAGAGCATATGCTGAAAACAAACCATGGGCGTTAGGTTTTCTTATGGACATTGTTGGTGCTTTGTTGATGCTGAGAGCACTATCACTTGCTCCTGTGTCAGTTGTTCAGCCAGTCTCGGGATGTGGCCTTGCCATTCTTTCCGTCTTTTCGCATTTTTATTTGAAGGAAGTCATGAATGTTTTTGACTGGATTGGGATTACTGTTGCCGGCATTGGGACCATAGGAGTTGGGGCTGGTGGTGAGGAGCAAGAAGCATCATTAATATCTGTCTTCCAGTTGCTGTGGCTAGCATTGGTTGTTGCCATCTTGTTTGTACTACTAAATGCGTGGCTTCATATCTTCAAACGCCAGCGCAGGGAGCAGGAGCTGGGGGAATATGAAGTGGTGGAAGAAATCATATATGGCTTGGAATCTGGCATTTTATTCGGAATGGCATCTGTAGTATCAAAGATGGGTTTTGTATTCGTGGAGCAGGGATTTTCTACAATGTTCATTCCCATGTGCATTTCGATTAGTATATGCTGTAGTGGAACTGGATTTTTCTACCAGACTCGGGGACTAAAACATGGGAGAGCAATCGTAGTATCCACTTGCGCTGCTGTGGCATCAATTGTAACAGGTGTGGTTGCAGGAATGTTTGCTCTGGGTGAGAAATTACCCACTTCACCATCTGGACGGCTTTTACTTCTCCTGGGATGGTTACTTATCATGCTAGGTGTTGTATTACTAGTGACTTCATCACGGCTTATCAGACATCTTCCACGGTCATTCCGGCGTTCAAGGCAAACCAGTTTAGAAAGAGGTTTCAACATAAGGCGGACAACTTCTCACACACCAAAGGATACAAACCCAAGTGCGGTTATCCAGGCAGCAACATTACACCATCTCTTATCATCCCCATCAAAAGACAAAGACTAA

Protein Analysis

344

Amino Acids

37.39

Weight (kDa)

9.48

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 49 - 115 2.7e-06 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016033)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11960
fragaria_vesca FvH4_2g31600
malus_domestica MD08G1064900.v1.1 MD15G1056700.v1.1
prunus_persica Prupe.1G409300_v2.0.a1
pyrus_communis pycom08g05320 pycom15g05310
rosa_chinensis RchiOBHm_Chr6g0311221
rosa_laevigata RLG00000010426
rosa_roxburghii Rroxscaffold_7G00157890
rosa_rugosa Rorug06G0386600.1
rosa_samantha Rh6AG500700 Rh6BG511300 Rh6DG503600
rosa_wichuraiana Rw6G043600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 29, 36, 934, 974
AcoI YGGCCR 1 cut(s) 30
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 6 cut(s) 70, 233, 330, 472, 670, 973
AflII CTTAAG 2 cut(s) 101, 107
AgsI TTSAA 4 cut(s) 280, 460, 897, 925
AhlI ACTAGT 1 cut(s) 844
AjnI CCWGG 2 cut(s) 807, 981
AluBI AGCT 2 cut(s) 106, 484
AluI AGCT 2 cut(s) 106, 484
Alw21I GWGCWC 1 cut(s) 196
Alw26I GTCTC 1 cut(s) 235
AlwNI CAGNNNCTG 2 cut(s) 397, 484
Ama87I CYCGRG 2 cut(s) 232, 669
AoxI GGCC 2 cut(s) 30, 241
ApeKI GCWGC 2 cut(s) 713, 986
AseI ATTAAT 1 cut(s) 377
AspLEI GCGC 2 cut(s) 471, 713
AspS9I GGNCC 1 cut(s) 333
AsuHPI GGTGA 3 cut(s) 368, 774, 776
AsuNHI GCTAGC 1 cut(s) 403
AvaI CYCGRG 2 cut(s) 232, 669
AvaII GGWCC 1 cut(s) 333
BaeGI GKGCMC 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 379
Bbv12I GWGCWC 1 cut(s) 196
BbvI GCAGC 2 cut(s) 700, 998
BccI CCATC 6 cut(s) 428, 562, 793, 807, 1008, 1024
BceAI ACGGC 2 cut(s) 809, 875
BcgI CGANNNNNNTGC 2 cut(s) 523, 557
BciT130I CCWGG 2 cut(s) 809, 983
BciVI GTATCC 2 cut(s) 712, 952
BcoDI GTCTC 1 cut(s) 235
BcuI ACTAGT 1 cut(s) 844
BfaI CTAG 3 cut(s) 404, 830, 845
BfmI CTRYAG 2 cut(s) 555, 640
BfrI CTTAAG 2 cut(s) 101, 107
BfuI GTATCC 2 cut(s) 712, 952
BisI GCNGC 3 cut(s) 30, 714, 987
BlsI GCNGC 3 cut(s) 31, 715, 988
Bme1390I CCNGG 2 cut(s) 809, 983
Bme18I GGWCC 1 cut(s) 333
BmeT110I CYCGRG 2 cut(s) 232, 669
BmgT120I GGNCC 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 2 cut(s) 809, 983
BmsI GCATC 4 cut(s) 174, 380, 560, 731
BmtI GCTAGC 1 cut(s) 407
BpiI GAAGAC 1 cut(s) 379
BpmI CTGGAG 1 cut(s) 47
Bsa29I ATCGAT 1 cut(s) 11
BsaJI CCNNGG 3 cut(s) 140, 808, 878
Bsc4I CCNNNNNNNGG 6 cut(s) 70, 233, 330, 472, 670, 973
Bse118I RCCGGY 1 cut(s) 323
Bse1I ACTGG 5 cut(s) 227, 308, 391, 655, 906
BseBI CCWGG 2 cut(s) 809, 983
BseCI ATCGAT 1 cut(s) 11
BseDI CCNNGG 3 cut(s) 140, 808, 878
BseGI GGATG 3 cut(s) 242, 818, 1010
BseLI CCNNNNNNNGG 6 cut(s) 70, 233, 330, 472, 670, 973
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 5 cut(s) 227, 308, 391, 655, 906
BseRI GAGGAG 2 cut(s) 81, 374
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 2 cut(s) 700, 998
BseYI CCCAGC 1 cut(s) 484
BshFI GGCC 2 cut(s) 32, 243
BshVI ATCGAT 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 196
BsiHKCI CYCGRG 2 cut(s) 232, 669
BsiSI CCGG 3 cut(s) 39, 324, 889
BslFI GGGAC 2 cut(s) 346, 687
BslI CCNNNNNNNGG 6 cut(s) 70, 233, 330, 472, 670, 973
BsmAI GTCTC 1 cut(s) 235
BsmFI GGGAC 2 cut(s) 346, 687
BsnI GGCC 2 cut(s) 32, 243
BsoBI CYCGRG 2 cut(s) 232, 669
Bsp1286I GDGCHC 2 cut(s) 77, 196
Bsp19I CCATGG 1 cut(s) 140
BspACI CCGC 4 cut(s) 29, 36, 934, 974
BspANI GGCC 2 cut(s) 32, 243
BspCNI CTCAG 1 cut(s) 180
BspDI ATCGAT 1 cut(s) 11
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 334
BspOI GCTAGC 1 cut(s) 407
BspTI CTTAAG 2 cut(s) 101, 107
BsrFI RCCGGY 1 cut(s) 323
BsrI ACTGG 5 cut(s) 227, 308, 391, 655, 906
BssAI RCCGGY 1 cut(s) 323
BssECI CCNNGG 3 cut(s) 140, 808, 878
BssT1I CCWWGG 1 cut(s) 140
Bst2UI CCWGG 2 cut(s) 809, 983
Bst4CI ACNGT 2 cut(s) 319, 882
BstAFI CTTAAG 2 cut(s) 101, 107
BstC8I GCNNGC 4 cut(s) 27, 325, 405, 467
BstDEI CTNAG 1 cut(s) 188
BstDSI CCRYGG 2 cut(s) 140, 878
BstF5I GGATG 3 cut(s) 242, 818, 1010
BstHHI GCGC 2 cut(s) 471, 713
BstMAI GTCTC 1 cut(s) 235
BstMWI GCNNNNNNNGC 4 cut(s) 35, 475, 719, 898
BstNI CCWGG 2 cut(s) 809, 983
BstSCI CCNGG 2 cut(s) 807, 981
BstSFI CTRYAG 2 cut(s) 555, 640
BstSLI GKGCMC 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 700, 998
BstV2I GAAGAC 1 cut(s) 379
Bsu15I ATCGAT 1 cut(s) 11
BsuI GTATCC 2 cut(s) 712, 952
BsuRI GGCC 2 cut(s) 32, 243
BsuTUI ATCGAT 1 cut(s) 11
BtgI CCRYGG 2 cut(s) 140, 878
BtsCI GGATG 3 cut(s) 242, 818, 1010
Cac8I GCNNGC 4 cut(s) 27, 325, 405, 467
CaiI CAGNNNCTG 2 cut(s) 397, 484
CciI TCATGA 1 cut(s) 288
CfoI GCGC 2 cut(s) 471, 713
Cfr10I RCCGGY 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 333
ClaI ATCGAT 1 cut(s) 11
Csp6I GTAC 1 cut(s) 431
CviAII CATG 5 cut(s) 141, 289, 616, 683, 826
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 30
EciI GGCGGA 1 cut(s) 949
Eco130I CCWWGG 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 333
Eco88I CYCGRG 2 cut(s) 232, 669
EcoRII CCWGG 2 cut(s) 807, 981
EcoT14I CCWWGG 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 5 cut(s) 144, 292, 619, 686, 829
FaqI GGGAC 2 cut(s) 346, 687
FatI CATG 5 cut(s) 140, 288, 615, 682, 825
FauNDI CATATG 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 30, 714, 987
FokI GGATG 3 cut(s) 249, 825, 997
Fsp4HI GCNGC 3 cut(s) 30, 714, 987
FspBI CTAG 3 cut(s) 404, 830, 845
GlaI GCGC 2 cut(s) 470, 712
GluI GCNGC 3 cut(s) 30, 714, 987
GsaI CCCAGC 1 cut(s) 488
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 2 cut(s) 32, 243
HapII CCGG 3 cut(s) 39, 324, 889
HhaI GCGC 2 cut(s) 471, 713
Hin1II CATG 5 cut(s) 144, 292, 619, 686, 829
Hin6I GCGC 2 cut(s) 469, 711
HinP1I GCGC 2 cut(s) 469, 711
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 3 cut(s) 8, 527, 667
HpaII CCGG 3 cut(s) 39, 324, 889
HphI GGTGA 3 cut(s) 368, 774, 776
Hpy188I TCNGA 2 cut(s) 545, 869
Hpy188III TCNNGA 4 cut(s) 64, 234, 289, 789
HpyAV CCTTC 2 cut(s) 64, 274
HpyCH4III ACNGT 2 cut(s) 319, 882
HpyCH4V TGCA 2 cut(s) 621, 746
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 475, 719, 898
HpyF3I CTNAG 1 cut(s) 188
Hsp92II CATG 5 cut(s) 144, 292, 619, 686, 829
HspAI GCGC 2 cut(s) 469, 711
KroI GCCGGC 1 cut(s) 323
KroNI GCCGGC 1 cut(s) 325
LmnI GCTCC 5 cut(s) 211, 361, 475, 481, 586
Lsp1109I GCAGC 2 cut(s) 700, 998
LweI GCATC 4 cut(s) 174, 380, 560, 731
MaeI CTAG 3 cut(s) 404, 830, 845
MaeIII GTNAC 3 cut(s) 730, 816, 847
MboII GAAGA 5 cut(s) 79, 379, 448, 518, 866
MfeI CAATTG 1 cut(s) 726
MhlI GDGCHC 2 cut(s) 77, 196
MluCI AATT 2 cut(s) 726, 770
MlyI GAGTC 1 cut(s) 661
MnlI CCTC 5 cut(s) 95, 99, 102, 352, 911
MroNI GCCGGC 1 cut(s) 323
MseI TTAA 4 cut(s) 102, 108, 116, 377
MslI CAYNNNNRTG 1 cut(s) 614
MspCI CTTAAG 2 cut(s) 101, 107
MspI CCGG 3 cut(s) 39, 324, 889
MspR9I CCNGG 2 cut(s) 809, 983
MunI CAATTG 1 cut(s) 726
MvaI CCWGG 2 cut(s) 809, 983
MwoI GCNNNNNNNGC 4 cut(s) 35, 475, 719, 898
NaeI GCCGGC 1 cut(s) 325
NcoI CCATGG 1 cut(s) 140
NdeI CATATG 1 cut(s) 124
NgoMIV GCCGGC 1 cut(s) 323
NheI GCTAGC 1 cut(s) 403
NlaIII CATG 5 cut(s) 144, 292, 619, 686, 829
NlaIV GGNNCC 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 847
PagI TCATGA 1 cut(s) 288
PdiI GCCGGC 1 cut(s) 325
PfeI GAWTC 2 cut(s) 8, 527
PkrI GCNGC 3 cut(s) 31, 715, 988
PleI GAGTC 1 cut(s) 661
PpsI GAGTC 1 cut(s) 661
PshBI ATTAAT 1 cut(s) 377
Psp6I CCWGG 2 cut(s) 807, 981
PspFI CCCAGC 1 cut(s) 484
PspGI CCWGG 2 cut(s) 807, 981
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 1 cut(s) 333
PstNI CAGNNNCTG 2 cut(s) 397, 484
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
RseI CAYNNNNRTG 1 cut(s) 614
SaqAI TTAA 4 cut(s) 102, 108, 116, 377
SatI GCNGC 3 cut(s) 30, 714, 987
Sau96I GGNCC 1 cut(s) 333
SchI GAGTC 1 cut(s) 661
ScrFI CCNGG 2 cut(s) 809, 983
SduI GDGCHC 2 cut(s) 77, 196
SetI ASST 8 cut(s) 60, 108, 114, 154, 486, 739, 835, 922
SfaNI GCATC 4 cut(s) 174, 380, 560, 731
SfcI CTRYAG 2 cut(s) 555, 640
SinI GGWCC 1 cut(s) 333
SmiMI CAYNNNNRTG 1 cut(s) 614
SmlI CTYRAG 2 cut(s) 101, 107
SmoI CTYRAG 2 cut(s) 101, 107
SpeI ACTAGT 1 cut(s) 844
Sse9I AATT 2 cut(s) 726, 770
SsiI CCGC 4 cut(s) 29, 36, 934, 974
SspMI CTAG 3 cut(s) 404, 830, 845
StyD4I CCNGG 2 cut(s) 807, 981
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 2 cut(s) 319, 882
TaqI TCGA 2 cut(s) 11, 626
TasI AATT 2 cut(s) 726, 770
TatI WGTACW 1 cut(s) 430
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 2 cut(s) 8, 527
Tru1I TTAA 4 cut(s) 102, 108, 116, 377
Tru9I TTAA 4 cut(s) 102, 108, 116, 377
TseFI GTSAC 1 cut(s) 847
TseI GCWGC 2 cut(s) 713, 986
Tsp45I GTSAC 1 cut(s) 847
TspDTI ATGAA 5 cut(s) 305, 440, 510, 598, 843
TspGWI ACGGA 1 cut(s) 247
Vha464I CTTAAG 2 cut(s) 101, 107
VpaK11BI GGWCC 1 cut(s) 333
VspI ATTAAT 1 cut(s) 377
XspI CTAG 3 cut(s) 404, 830, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.