Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016033

Physical Location & Seq

Genomic Coordinates Forward (+)

1571661 .. 1575189

Gene Structure 3529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00157890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTGGGAGTCGATCCTTCTGACGTTGGCGGCGACCGCCGGAAACAACATCGGCAAAATTCTTCAGAAGAAGGGCACCGTCATTCTTCCGCCTCTCTCTTTGAAGCTCAAGGCACTGTTCTTCTCCTTCTACTCTTACCCATTTGCTTTTTCTTCATTTCCTTTATTGCATGTGTTCATCTTTATGATTGGTATTGATTGCAAGCCCTTCACTTTTGTGATAAGGGCATATGCCTTGAACAGAGCTTGGTTGATAGGTTTTCTGATGGATATATTTGGAGCCTTGCTCATGTTGAGAGCACTGTCTCTTGCTCCTGTATCTGTCATCCAACCGGTTTCTGGGTGTGGACTTGCTATCCTTTCGATATTTTCCCATTTTTATCTGAAGGAAATCATGAATGCTGTTGACTGGCTGGGGATTACTTTAGCAGGCATTGGCACTATAGGAGTTGGTGCTGGAGGTGAGGAGCAAAAGGCTTCTGCTATATCTATCTTCCATCTACCATGGTTGGCAATTGTGGTCGCCATCTTGTTTGTGCTCCTTAATGCTTGGCTACGAATCTACAGACGTCAACGAAAAGAACAGGAGTTGATGGAATATGAAGTTGTAGAAGAGATTATATATGGCTTGGAATCTGGCATTTTGTTTGGAATGGCATCTGTAATATCAAAGATGGGCTTTGTGTTCTTGGAGCAGGGTTTCCCCAGCATACTAGTTCCTATATGCTTGATAGTCAGCATATGTTGTAGCGGTACAGGGTTTTACTACCAGACTTGGGGTTTAAAGCATGGGAGGGCAATTGTAGTCTCTACATGTGCTGCTGTGGCATCAATTGTTACTGGTGTTGTTGCTGGAATGCTTGCATTGGGTGAAAGATTGCCTTCAGCGCCAACAGCTCGTATTACACTTATGCTTGGATGGCCTCACTTTAGGGTATTTATAATTGGTGGGGTGATTTTACTTGTGAGCTCAACACGGCTGGTGCGTCACCTTCCTCGGTCTTTACGACATGTTGATAAGAGCTTCAACGTTAGAAAATCCGGGTCTACCCGTGTTAGGGAGTCCAACCCTAGCACTGTTATCCAGGCATCAACTCTGCATCATTTGATGCCTACTTCTTCCAAAGAGAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0071944 GO:0072511 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

378

Amino Acids

41.5

Weight (kDa)

9.69

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11960
fragaria_vesca	FvH4_2g31600
malus_domestica	MD08G1064900.v1.1 MD15G1056700.v1.1
prunus_persica	Prupe.1G409300_v2.0.a1
pyrus_communis	pycom08g05320 pycom15g05310
rosa_chinensis	RchiOBHm_Chr6g0311221
rosa_laevigata	RLG00000010426
rosa_roxburghii	Rroxscaffold_7G00157890
rosa_rugosa	Rorug06G0386600.1
rosa_samantha	Rh6AG500700 Rh6BG511300 Rh6DG503600
rosa_wichuraiana	Rw6G043600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	941
AatII	GACGTC	1 cut(s)	571
AccB1I	GGYRCC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	1046
AciI	CCGC	4 cut(s)	29, 36, 89, 750
AclI	AACGTT	1 cut(s)	1029
AclWI	GGATC	1 cut(s)	7
AcsI	RAATTY	1 cut(s)	57
AcuI	CTGAAG	3 cut(s)	47, 404, 867
AcyI	GRCGYC	1 cut(s)	568
AfaI	GTAC	1 cut(s)	754
AfiI	CCNNNNNNNGG	4 cut(s)	338, 775, 1056, 1057
AflIII	ACRYGT	2 cut(s)	812, 1009
AgeI	ACCGGT	1 cut(s)	331
AgsI	TTSAA	3 cut(s)	103, 238, 1027
AhlI	ACTAGT	1 cut(s)	712
AjnI	CCWGG	1 cut(s)	1083
AleI	CACNNNNGTG	1 cut(s)	215
AluBI	AGCT	5 cut(s)	106, 245, 896, 969, 1023
AluI	AGCT	5 cut(s)	106, 245, 896, 969, 1023
Alw21I	GWGCWC	3 cut(s)	301, 540, 971
Alw26I	GTCTC	2 cut(s)	309, 811
AlwI	GGATC	1 cut(s)	7
AoxI	GGCC	1 cut(s)	920
ApeKI	GCWGC	1 cut(s)	818
ApoI	RAATTY	1 cut(s)	57
AsiGI	ACCGGT	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	889
AsuC2I	CCSGG	1 cut(s)	1042
AsuHPI	GGTGA	4 cut(s)	473, 881, 964, 980
BaeGI	GKGCMC	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	971
Bbv12I	GWGCWC	3 cut(s)	301, 540, 971
BbvI	GCAGC	1 cut(s)	805
BccI	CCATC	6 cut(s)	259, 504, 533, 586, 667, 912
BceAI	ACGGC	1 cut(s)	992
BciT130I	CCWGG	1 cut(s)	1085
BcnI	CCSGG	1 cut(s)	1042
BcoDI	GTCTC	2 cut(s)	309, 811
BcuI	ACTAGT	1 cut(s)	712
BfaI	CTAG	2 cut(s)	713, 1071
BfmI	CTRYAG	2 cut(s)	441, 562
BfoI	RGCGCY	1 cut(s)	890
BisI	GCNGC	2 cut(s)	30, 819
BlsI	GCNGC	2 cut(s)	31, 820
Bme1390I	CCNGG	2 cut(s)	1042, 1085
BmiI	GGNNCC	2 cut(s)	76, 280
BmrFI	CCNGG	2 cut(s)	1042, 1085
BmsI	GCATC	5 cut(s)	665, 836, 1097, 1098, 1108
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
BpmI	CTGGAG	1 cut(s)	477
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	1042
BsaHI	GRCGYC	1 cut(s)	568
BsaJI	CCNNGG	2 cut(s)	503, 995
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	4 cut(s)	338, 775, 1056, 1057
Bse118I	RCCGGY	1 cut(s)	331
Bse1I	ACTGG	2 cut(s)	413, 844
BseBI	CCWGG	1 cut(s)	1085
BseDI	CCNNGG	2 cut(s)	503, 995
BseGI	GGATG	2 cut(s)	324, 923
BseLI	CCNNNNNNNGG	4 cut(s)	338, 775, 1056, 1057
BseNI	ACTGG	2 cut(s)	413, 844
BseRI	GAGGAG	1 cut(s)	479
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	805
BseYI	CCCAGC	2 cut(s)	412, 704
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	922
BshNI	GGYRCC	1 cut(s)	74
BshTI	ACCGGT	1 cut(s)	331
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	3 cut(s)	301, 540, 971
BsiSI	CCGG	3 cut(s)	39, 332, 1041
BslI	CCNNNNNNNGG	4 cut(s)	338, 775, 1056, 1057
BsmAI	GTCTC	2 cut(s)	309, 811
BsmI	GAATGC	2 cut(s)	403, 861
BsnI	GGCC	1 cut(s)	922
Bsp1286I	GDGCHC	4 cut(s)	77, 301, 540, 971
Bsp143I	GATC	1 cut(s)	12
Bsp19I	CCATGG	1 cut(s)	503
BspACI	CCGC	4 cut(s)	29, 36, 89, 750
BspANI	GGCC	1 cut(s)	922
BspHI	TCATGA	1 cut(s)	393
BspLI	GGNNCC	2 cut(s)	76, 280
BspPI	GGATC	1 cut(s)	7
BspT107I	GGYRCC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	331
BsrI	ACTGG	2 cut(s)	413, 844
BssAI	RCCGGY	1 cut(s)	331
BssECI	CCNNGG	2 cut(s)	503, 995
BssMI	GATC	1 cut(s)	12
BssNI	GRCGYC	1 cut(s)	568
BssT1I	CCWWGG	1 cut(s)	503
Bst2UI	CCWGG	1 cut(s)	1085
Bst4CI	ACNGT	4 cut(s)	79, 117, 303, 1078
Bst6I	CTCTTC	1 cut(s)	606
BstACI	GRCGYC	1 cut(s)	568
BstC8I	GCNNGC	3 cut(s)	203, 430, 861
BstDSI	CCRYGG	1 cut(s)	503
BstF5I	GGATG	2 cut(s)	324, 923
BstH2I	RGCGCY	1 cut(s)	890
BstHHI	GCGC	1 cut(s)	889
BstKTI	GATC	1 cut(s)	15
BstMAI	GTCTC	2 cut(s)	309, 811
BstMBI	GATC	1 cut(s)	12
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 824, 886, 893, 919
BstNI	CCWGG	1 cut(s)	1085
BstNSI	RCATGY	3 cut(s)	173, 816, 1013
BstSCI	CCNGG	2 cut(s)	1040, 1083
BstSFI	CTRYAG	2 cut(s)	441, 562
BstSLI	GKGCMC	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	805
BsuRI	GGCC	1 cut(s)	922
BtgI	CCRYGG	1 cut(s)	503
BtsCI	GGATG	2 cut(s)	324, 923
BtsIMutI	CAGTG	3 cut(s)	113, 299, 1074
Cac8I	GCNNGC	3 cut(s)	203, 430, 861
CciI	TCATGA	1 cut(s)	393
CfoI	GCGC	1 cut(s)	889
Cfr10I	RCCGGY	1 cut(s)	331
CseI	GACGC	1 cut(s)	974
Csp6I	GTAC	1 cut(s)	753
CspAI	ACCGGT	1 cut(s)	331
CviAII	CATG	7 cut(s)	170, 289, 394, 504, 788, 813, 1010
CviQI	GTAC	1 cut(s)	753
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
DraI	TTTAAA	1 cut(s)	783
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
EciI	GGCGGA	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	969
Eco130I	CCWWGG	1 cut(s)	503
Eco24I	GRGCYC	1 cut(s)	971
Eco53kI	GAGCTC	1 cut(s)	969
Eco57I	CTGAAG	3 cut(s)	47, 404, 867
EcoICRI	GAGCTC	1 cut(s)	969
EcoRII	CCWGG	1 cut(s)	1083
EcoT14I	CCWWGG	1 cut(s)	503
EcoT38I	GRGCYC	1 cut(s)	971
ErhI	CCWWGG	1 cut(s)	503
FaeI	CATG	7 cut(s)	173, 292, 397, 507, 791, 816, 1013
FalI	AAGNNNNNCTT	4 cut(s)	662, 694, 865, 897
FatI	CATG	7 cut(s)	169, 288, 393, 503, 787, 812, 1009
FauNDI	CATATG	2 cut(s)	229, 740
FblI	GTMKAC	1 cut(s)	1046
Fnu4HI	GCNGC	2 cut(s)	30, 819
FokI	GGATG	2 cut(s)	311, 930
FriOI	GRGCYC	1 cut(s)	971
Fsp4HI	GCNGC	2 cut(s)	30, 819
FspBI	CTAG	2 cut(s)	713, 1071
GlaI	GCGC	1 cut(s)	888
GluI	GCNGC	2 cut(s)	30, 819
GsaI	CCCAGC	2 cut(s)	416, 708
GsuI	CTGGAG	1 cut(s)	477
HaeII	RGCGCY	1 cut(s)	890
HaeIII	GGCC	1 cut(s)	922
HapII	CCGG	3 cut(s)	39, 332, 1041
HgaI	GACGC	1 cut(s)	974
HhaI	GCGC	1 cut(s)	889
Hin1I	GRCGYC	1 cut(s)	568
Hin1II	CATG	7 cut(s)	173, 292, 397, 507, 791, 816, 1013
Hin6I	GCGC	1 cut(s)	887
HinP1I	GCGC	1 cut(s)	887
HincII	GTYRAC	2 cut(s)	406, 572
HindII	GTYRAC	2 cut(s)	406, 572
HinfI	GANTC	4 cut(s)	8, 558, 632, 1061
HpaII	CCGG	3 cut(s)	39, 332, 1041
HphI	GGTGA	4 cut(s)	473, 881, 964, 980
Hpy166II	GTNNAC	4 cut(s)	347, 406, 572, 1047
Hpy188I	TCNGA	4 cut(s)	21, 66, 264, 384
Hpy188III	TCNNGA	1 cut(s)	394
Hpy8I	GTNNAC	4 cut(s)	347, 406, 572, 1047
HpyAV	CCTTC	8 cut(s)	26, 64, 136, 217, 379, 891, 1001, 1123
HpyCH4III	ACNGT	4 cut(s)	79, 117, 303, 1078
HpyCH4IV	ACGT	3 cut(s)	23, 568, 1029
HpyCH4V	TGCA	4 cut(s)	169, 201, 863, 1099
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 824, 886, 893, 919
HpySE526I	ACGT	3 cut(s)	23, 568, 1029
Hsp92I	GRCGYC	1 cut(s)	568
Hsp92II	CATG	7 cut(s)	173, 292, 397, 507, 791, 816, 1013
HspAI	GCGC	1 cut(s)	887
Kzo9I	GATC	1 cut(s)	12
LmnI	GCTCC	5 cut(s)	278, 316, 466, 543, 691
Lsp1109I	GCAGC	1 cut(s)	805
LweI	GCATC	5 cut(s)	665, 836, 1097, 1098, 1108
MaeI	CTAG	2 cut(s)	713, 1071
MaeII	ACGT	3 cut(s)	23, 568, 1029
MaeIII	GTNAC	2 cut(s)	835, 986
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	8 cut(s)	53, 77, 79, 112, 144, 484, 623, 1110
MfeI	CAATTG	3 cut(s)	513, 798, 831
MhlI	GDGCHC	4 cut(s)	77, 301, 540, 971
MluCI	AATT	5 cut(s)	57, 513, 798, 831, 942
MlyI	GAGTC	2 cut(s)	17, 1070
MmeI	TCCRAC	2 cut(s)	352, 1089
MnlI	CCTC	6 cut(s)	102, 452, 457, 786, 933, 1005
MseI	TTAA	2 cut(s)	543, 782
MslI	CAYNNNNRTG	2 cut(s)	182, 215
MspI	CCGG	3 cut(s)	39, 332, 1041
MspR9I	CCNGG	2 cut(s)	1042, 1085
MunI	CAATTG	3 cut(s)	513, 798, 831
Mva1269I	GAATGC	2 cut(s)	403, 861
MvaI	CCWGG	1 cut(s)	1085
MwoI	GCNNNNNNNGC	5 cut(s)	35, 824, 886, 893, 919
NciI	CCSGG	1 cut(s)	1042
NcoI	CCATGG	1 cut(s)	503
NdeI	CATATG	2 cut(s)	229, 740
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	7 cut(s)	173, 292, 397, 507, 791, 816, 1013
NlaIV	GGNNCC	2 cut(s)	76, 280
NmuCI	GTSAC	1 cut(s)	986
NspI	RCATGY	3 cut(s)	173, 816, 1013
OliI	CACNNNNGTG	1 cut(s)	215
PagI	TCATGA	1 cut(s)	393
PciI	ACATGT	2 cut(s)	812, 1009
PcsI	WCGNNNNNNNCGW	3 cut(s)	29, 982, 1003
PctI	GAATGC	2 cut(s)	403, 861
PfeI	GAWTC	2 cut(s)	558, 632
PinAI	ACCGGT	1 cut(s)	331
PkrI	GCNGC	2 cut(s)	31, 820
PleI	GAGTC	2 cut(s)	16, 1069
PpsI	GAGTC	2 cut(s)	16, 1069
PscI	ACATGT	2 cut(s)	812, 1009
PsiI	TTATAA	1 cut(s)	941
Psp124BI	GAGCTC	1 cut(s)	971
Psp1406I	AACGTT	1 cut(s)	1029
Psp6I	CCWGG	1 cut(s)	1083
PspFI	CCCAGC	2 cut(s)	412, 704
PspGI	CCWGG	1 cut(s)	1083
PspN4I	GGNNCC	2 cut(s)	76, 280
RsaI	GTAC	1 cut(s)	754
RsaNI	GTAC	1 cut(s)	753
RseI	CAYNNNNRTG	2 cut(s)	182, 215
SacI	GAGCTC	1 cut(s)	971
SaqAI	TTAA	2 cut(s)	543, 782
SatI	GCNGC	2 cut(s)	30, 819
Sau3AI	GATC	1 cut(s)	12
SchI	GAGTC	2 cut(s)	17, 1070
ScrFI	CCNGG	2 cut(s)	1042, 1085
SduI	GDGCHC	4 cut(s)	77, 301, 540, 971
SfaNI	GCATC	5 cut(s)	665, 836, 1097, 1098, 1108
SfcI	CTRYAG	2 cut(s)	441, 562
SmiMI	CAYNNNNRTG	2 cut(s)	182, 215
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SpeI	ACTAGT	1 cut(s)	712
Sse9I	AATT	5 cut(s)	57, 513, 798, 831, 942
SsiI	CCGC	4 cut(s)	29, 36, 89, 750
SspMI	CTAG	2 cut(s)	713, 1071
SstI	GAGCTC	1 cut(s)	971
StyD4I	CCNGG	2 cut(s)	1040, 1083
StyI	CCWWGG	1 cut(s)	503
TaaI	ACNGT	4 cut(s)	79, 117, 303, 1078
TaiI	ACGT	3 cut(s)	26, 571, 1032
TaqI	TCGA	2 cut(s)	11, 362
TaqII	GACCGA	1 cut(s)	987
TasI	AATT	5 cut(s)	57, 513, 798, 831, 942
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	558, 632
Tru1I	TTAA	2 cut(s)	543, 782
Tru9I	TTAA	2 cut(s)	543, 782
TscAI	CASTG	3 cut(s)	120, 306, 1081
TseFI	GTSAC	1 cut(s)	986
TseI	GCWGC	1 cut(s)	818
Tsp45I	GTSAC	1 cut(s)	986
TspDTI	ATGAA	4 cut(s)	144, 166, 410, 615
TspRI	CASTG	3 cut(s)	120, 306, 1081
XapI	RAATTY	1 cut(s)	57
XceI	RCATGY	3 cut(s)	173, 816, 1013
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	1046
XspI	CTAG	2 cut(s)	713, 1071
ZraI	GACGTC	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.