FvH4_2g31600

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016033
Physical Location & Seq
Forward (+)
24189068 .. 24192560
3493 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31600.t2

Sequence Viewer

Length: 1020 bp
ATGTGGGAGTCGATCTTTCTGACGTTGGCGGCGACGGCCGGAAACAACATCGGCAAAATTCTTCAGAAGAAGGGCACCGTCATTCTTCCCCCTCTCTCTTTGAAGCTCAAGGTGATAAGGGCGTATGCCTTGAACAAAGCTTGGTTGATAGGATTTCTGATGGATATATTTGGAGCCTTGCTCATGTTGAGAGCATTGTCTCTTGCTCCTGTATCTGTCATCCAACCAGTTTCTGGGTGTGGACTTGCTATCCTTTCGATATTTTCCCATTTTTATCTGAAGGAAATCATGAATGCTGTTGACTGGATGGGGATTACCTTAGCAGGCATTGGCACTATAGGAGTTGGTGCTGGAGGTGAAGAGCAAAAGGCTTCTGCTATATCTGTCTTCCATCTACCATGGTTGGCAATTGTGGTCGCCATCTTGTTTGTACTCCTTAATGGTTGGTTACGAATCTACAGACGTCAACGAAAAGAACAGGAGCTGATGGAATATGAAGTTGTTGAAGAAATTATATATGGCTTGGAATCTGGCATTTTGTTCGGAATGGCATCTGTAATATCAAAGATGGGCTTTGTGTTCTTGGAGCAGGGTTTCCCCAGCATATTAGTTCCTATATGCTTGATAATCAGCATATGTTGTAGCGGTACTGGGTTCTATTACCAGACTTGGGGTTTAAAGCATGGGAGGGCGATTGTAGTCTCTACATGTGCTGCTGTGGCATCAATTGTTACTGGTGTTCTTGCTGGTATGCTTGCTTTGGGTGAAAGATTGCCTTCAGCGCCCACAGCTCGTCTTACACTACTGCTTGGATGGGCATTTATAATTGTTGGGGTGATTCTACTTGTGAGCTCAACACGGTTGGTGCCTTACCTTCCTCGGTCTATACGACATGTTGACAAGAGCTTCAACGTTAGAAAATCTGGATCCACCCGTGGTAGGGACTCCAACCCTAGCACTATTATCCAGGCATCAACTTTGCATCATTTGATGCCTGCGTCTTCTAAAGAGAAGGCTTGA

Protein Analysis

340

Amino Acids

36.74

Weight (kDa)

9.63

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016033)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11960
fragaria_vesca FvH4_2g31600
malus_domestica MD08G1064900.v1.1 MD15G1056700.v1.1
prunus_persica Prupe.1G409300_v2.0.a1
pyrus_communis pycom08g05320 pycom15g05310
rosa_chinensis RchiOBHm_Chr6g0311221
rosa_laevigata RLG00000010426
rosa_roxburghii Rroxscaffold_7G00157890
rosa_rugosa Rorug06G0386600.1
rosa_samantha Rh6AG500700 Rh6BG511300 Rh6DG503600
rosa_wichuraiana Rw6G043600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 824
AatII GACGTC 1 cut(s) 466
AccB1I GGYRCC 2 cut(s) 74, 865
AccB7I CCANNNNNTGG 1 cut(s) 233
AciI CCGC 2 cut(s) 29, 645
AclI AACGTT 1 cut(s) 912
AclWI GGATC 2 cut(s) 921, 934
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 1 cut(s) 57
AcuI CTGAAG 3 cut(s) 47, 299, 762
AcyI GRCGYC 1 cut(s) 463
AfaI GTAC 2 cut(s) 432, 649
AfiI CCNNNNNNNGG 4 cut(s) 233, 670, 939, 940
AflIII ACRYGT 2 cut(s) 707, 892
AgsI TTSAA 4 cut(s) 103, 133, 506, 910
AjnI CCWGG 1 cut(s) 966
AluBI AGCT 6 cut(s) 106, 140, 484, 791, 852, 906
AluI AGCT 6 cut(s) 106, 140, 484, 791, 852, 906
Alw21I GWGCWC 1 cut(s) 854
Alw26I GTCTC 2 cut(s) 204, 706
AlwI GGATC 2 cut(s) 921, 934
AlwNI CAGNNNCTG 2 cut(s) 233, 484
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 713
ApoI RAATTY 1 cut(s) 57
AspLEI GCGC 1 cut(s) 784
AsuHPI GGTGA 4 cut(s) 124, 368, 776, 847
BaeGI GKGCMC 1 cut(s) 77
BamHI GGATCC 1 cut(s) 926
BanI GGYRCC 2 cut(s) 74, 865
BanII GRGCYC 1 cut(s) 854
BbsI GAAGAC 2 cut(s) 379, 993
Bbv12I GWGCWC 1 cut(s) 854
BbvI GCAGC 1 cut(s) 700
BccI CCATC 7 cut(s) 154, 301, 399, 428, 481, 562, 807
BceAI ACGGC 1 cut(s) 51
BcgI CGANNNNNNTGC 2 cut(s) 523, 557
BciT130I CCWGG 1 cut(s) 968
BcoDI GTCTC 2 cut(s) 204, 706
BfaI CTAG 1 cut(s) 954
BfmI CTRYAG 2 cut(s) 336, 457
BfoI RGCGCY 1 cut(s) 785
BisI GCNGC 2 cut(s) 30, 714
BlsI GCNGC 2 cut(s) 31, 715
Bme1390I CCNGG 1 cut(s) 968
BmiI GGNNCC 4 cut(s) 76, 175, 867, 928
BmrFI CCNGG 1 cut(s) 968
BmrI ACTGGG 1 cut(s) 660
BmsI GCATC 5 cut(s) 560, 731, 980, 981, 991
BmuI ACTGGG 1 cut(s) 660
BpiI GAAGAC 2 cut(s) 379, 993
BplI GAGNNNNNCTC 2 cut(s) 165, 197
BpmI CTGGAG 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 319
BpuEI CTTGAG 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 463
BsaJI CCNNGG 3 cut(s) 398, 878, 934
Bsc4I CCNNNNNNNGG 4 cut(s) 233, 670, 939, 940
Bse1I ACTGG 4 cut(s) 227, 308, 655, 739
BseBI CCWGG 1 cut(s) 968
BseDI CCNNGG 3 cut(s) 398, 878, 934
BseGI GGATG 3 cut(s) 219, 312, 818
BseLI CCNNNNNNNGG 4 cut(s) 233, 670, 939, 940
BseNI ACTGG 4 cut(s) 227, 308, 655, 739
BseSI GKGCMC 1 cut(s) 77
BseX3I CGGCCG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 700
BseYI CCCAGC 1 cut(s) 599
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 1 cut(s) 38
BshNI GGYRCC 2 cut(s) 74, 865
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 854
BsiSI CCGG 1 cut(s) 39
BslFI GGGAC 1 cut(s) 956
BslI CCNNNNNNNGG 4 cut(s) 233, 670, 939, 940
BsmAI GTCTC 2 cut(s) 204, 706
BsmFI GGGAC 1 cut(s) 956
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 1 cut(s) 38
Bsp1286I GDGCHC 2 cut(s) 77, 854
Bsp143I GATC 2 cut(s) 12, 926
Bsp19I CCATGG 1 cut(s) 398
BspACI CCGC 2 cut(s) 29, 645
BspANI GGCC 1 cut(s) 38
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 4 cut(s) 76, 175, 867, 928
BspPI GGATC 2 cut(s) 921, 934
BspQI GCTCTTC 1 cut(s) 354
BspT107I GGYRCC 2 cut(s) 74, 865
BsrI ACTGG 4 cut(s) 227, 308, 655, 739
BssECI CCNNGG 3 cut(s) 398, 878, 934
BssMI GATC 2 cut(s) 12, 926
BssNI GRCGYC 1 cut(s) 463
BssT1I CCWWGG 1 cut(s) 398
Bst2UI CCWGG 1 cut(s) 968
Bst4CI ACNGT 2 cut(s) 79, 861
Bst6I CTCTTC 1 cut(s) 354
BstACI GRCGYC 1 cut(s) 463
BstC8I GCNNGC 3 cut(s) 325, 756, 996
BstDEI CTNAG 1 cut(s) 319
BstDSI CCRYGG 2 cut(s) 398, 934
BstF5I GGATG 3 cut(s) 219, 312, 818
BstH2I RGCGCY 1 cut(s) 785
BstHHI GCGC 1 cut(s) 784
BstKTI GATC 2 cut(s) 15, 929
BstMAI GTCTC 2 cut(s) 204, 706
BstMBI GATC 2 cut(s) 12, 926
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 4 cut(s) 35, 719, 781, 788
BstNI CCWGG 1 cut(s) 968
BstNSI RCATGY 2 cut(s) 711, 896
BstSCI CCNGG 1 cut(s) 966
BstSFI CTRYAG 2 cut(s) 336, 457
BstSLI GKGCMC 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 700
BstV2I GAAGAC 2 cut(s) 379, 993
BstX2I RGATCY 1 cut(s) 926
BstYI RGATCY 1 cut(s) 926
BstZI CGGCCG 1 cut(s) 36
BsuRI GGCC 1 cut(s) 38
BtgI CCRYGG 2 cut(s) 398, 934
BtsCI GGATG 3 cut(s) 219, 312, 818
Cac8I GCNNGC 3 cut(s) 325, 756, 996
CaiI CAGNNNCTG 2 cut(s) 233, 484
CciI TCATGA 1 cut(s) 288
CfoI GCGC 1 cut(s) 784
CseI GACGC 1 cut(s) 987
Csp6I GTAC 2 cut(s) 431, 648
CviAII CATG 6 cut(s) 184, 289, 399, 683, 708, 893
CviQI GTAC 2 cut(s) 431, 648
DdeI CTNAG 1 cut(s) 319
DpnI GATC 2 cut(s) 14, 928
DpnII GATC 2 cut(s) 12, 926
DraI TTTAAA 1 cut(s) 678
EaeI YGGCCR 1 cut(s) 36
EagI CGGCCG 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Ecl136II GAGCTC 1 cut(s) 852
EclXI CGGCCG 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 398
Eco24I GRGCYC 1 cut(s) 854
Eco52I CGGCCG 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 852
Eco57I CTGAAG 3 cut(s) 47, 299, 762
EcoICRI GAGCTC 1 cut(s) 852
EcoRII CCWGG 1 cut(s) 966
EcoT14I CCWWGG 1 cut(s) 398
EcoT38I GRGCYC 1 cut(s) 854
ErhI CCWWGG 1 cut(s) 398
FaeI CATG 6 cut(s) 187, 292, 402, 686, 711, 896
FalI AAGNNNNNCTT 4 cut(s) 557, 589, 760, 792
FaqI GGGAC 1 cut(s) 956
FatI CATG 6 cut(s) 183, 288, 398, 682, 707, 892
FauNDI CATATG 1 cut(s) 635
Fnu4HI GCNGC 2 cut(s) 30, 714
FokI GGATG 3 cut(s) 206, 319, 825
FriOI GRGCYC 1 cut(s) 854
Fsp4HI GCNGC 2 cut(s) 30, 714
FspBI CTAG 1 cut(s) 954
GlaI GCGC 1 cut(s) 783
GluI GCNGC 2 cut(s) 30, 714
GsaI CCCAGC 1 cut(s) 603
GsuI CTGGAG 1 cut(s) 372
HaeII RGCGCY 1 cut(s) 785
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 39
HgaI GACGC 1 cut(s) 987
HhaI GCGC 1 cut(s) 784
Hin1I GRCGYC 1 cut(s) 463
Hin1II CATG 6 cut(s) 187, 292, 402, 686, 711, 896
Hin6I GCGC 1 cut(s) 782
HinP1I GCGC 1 cut(s) 782
HincII GTYRAC 3 cut(s) 301, 467, 898
HindII GTYRAC 3 cut(s) 301, 467, 898
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 5 cut(s) 8, 453, 527, 838, 944
HpaII CCGG 1 cut(s) 39
HphI GGTGA 4 cut(s) 124, 368, 776, 847
Hpy166II GTNNAC 4 cut(s) 242, 301, 467, 898
Hpy188I TCNGA 5 cut(s) 21, 66, 159, 279, 545
Hpy188III TCNNGA 2 cut(s) 289, 924
Hpy8I GTNNAC 4 cut(s) 242, 301, 467, 898
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 5 cut(s) 64, 274, 786, 884, 1006
HpyCH4III ACNGT 2 cut(s) 79, 861
HpyCH4IV ACGT 3 cut(s) 23, 463, 912
HpyCH4V TGCA 1 cut(s) 982
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 719, 781, 788
HpyF3I CTNAG 1 cut(s) 319
HpySE526I ACGT 3 cut(s) 23, 463, 912
Hsp92I GRCGYC 1 cut(s) 463
Hsp92II CATG 6 cut(s) 187, 292, 402, 686, 711, 896
HspAI GCGC 1 cut(s) 782
Kzo9I GATC 2 cut(s) 12, 926
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 4 cut(s) 173, 211, 481, 586
Lsp1109I GCAGC 1 cut(s) 700
LweI GCATC 5 cut(s) 560, 731, 980, 981, 991
MaeI CTAG 1 cut(s) 954
MaeII ACGT 3 cut(s) 23, 463, 912
MaeIII GTNAC 2 cut(s) 447, 730
MalI GATC 2 cut(s) 14, 928
MboI GATC 2 cut(s) 12, 926
MboII GAAGA 7 cut(s) 53, 77, 79, 371, 379, 518, 993
MfeI CAATTG 2 cut(s) 408, 726
MflI RGATCY 1 cut(s) 926
MhlI GDGCHC 2 cut(s) 77, 854
MluCI AATT 5 cut(s) 57, 408, 510, 726, 825
MlyI GAGTC 2 cut(s) 17, 938
MmeI TCCRAC 2 cut(s) 247, 972
MnlI CCTC 4 cut(s) 102, 347, 681, 888
MseI TTAA 2 cut(s) 438, 677
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 968
MunI CAATTG 2 cut(s) 408, 726
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 1 cut(s) 968
MwoI GCNNNNNNNGC 4 cut(s) 35, 719, 781, 788
NcoI CCATGG 1 cut(s) 398
NdeI CATATG 1 cut(s) 635
NdeII GATC 2 cut(s) 12, 926
NlaIII CATG 6 cut(s) 187, 292, 402, 686, 711, 896
NlaIV GGNNCC 4 cut(s) 76, 175, 867, 928
NspI RCATGY 2 cut(s) 711, 896
PagI TCATGA 1 cut(s) 288
PciI ACATGT 2 cut(s) 707, 892
PciSI GCTCTTC 1 cut(s) 354
PcsI WCGNNNNNNNCGW 2 cut(s) 29, 886
PctI GAATGC 1 cut(s) 298
PfeI GAWTC 3 cut(s) 453, 527, 838
PflMI CCANNNNNTGG 1 cut(s) 233
PkrI GCNGC 2 cut(s) 31, 715
PleI GAGTC 2 cut(s) 16, 938
PpsI GAGTC 2 cut(s) 16, 938
PscI ACATGT 2 cut(s) 707, 892
PsiI TTATAA 1 cut(s) 824
Psp124BI GAGCTC 1 cut(s) 854
Psp1406I AACGTT 1 cut(s) 912
Psp6I CCWGG 1 cut(s) 966
PspFI CCCAGC 1 cut(s) 599
PspGI CCWGG 1 cut(s) 966
PspN4I GGNNCC 4 cut(s) 76, 175, 867, 928
PstNI CAGNNNCTG 2 cut(s) 233, 484
PsuI RGATCY 1 cut(s) 926
RsaI GTAC 2 cut(s) 432, 649
RsaNI GTAC 2 cut(s) 431, 648
SacI GAGCTC 1 cut(s) 854
SapI GCTCTTC 1 cut(s) 354
SaqAI TTAA 2 cut(s) 438, 677
SatI GCNGC 2 cut(s) 30, 714
Sau3AI GATC 2 cut(s) 12, 926
SchI GAGTC 2 cut(s) 17, 938
ScrFI CCNGG 1 cut(s) 968
SduI GDGCHC 2 cut(s) 77, 854
SfaNI GCATC 5 cut(s) 560, 731, 980, 981, 991
SfcI CTRYAG 2 cut(s) 336, 457
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 5 cut(s) 57, 408, 510, 726, 825
SsiI CCGC 2 cut(s) 29, 645
SspMI CTAG 1 cut(s) 954
SstI GAGCTC 1 cut(s) 854
StyD4I CCNGG 1 cut(s) 966
StyI CCWWGG 1 cut(s) 398
TaaI ACNGT 2 cut(s) 79, 861
TaiI ACGT 3 cut(s) 26, 466, 915
TaqI TCGA 2 cut(s) 11, 257
TaqII GACCGA 1 cut(s) 870
TasI AATT 5 cut(s) 57, 408, 510, 726, 825
TatI WGTACW 1 cut(s) 430
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 3 cut(s) 453, 527, 838
Tru1I TTAA 2 cut(s) 438, 677
Tru9I TTAA 2 cut(s) 438, 677
TseI GCWGC 1 cut(s) 713
TspDTI ATGAA 2 cut(s) 305, 510
Van91I CCANNNNNTGG 1 cut(s) 233
XapI RAATTY 1 cut(s) 57
XceI RCATGY 2 cut(s) 711, 896
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
XspI CTAG 1 cut(s) 954
ZraI GACGTC 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.