Rh6AG500700

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0016033
Physical Location & Seq
Reverse (-)
67519507 .. 67523041
3535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG500700.1

Sequence Viewer

Length: 1005 bp
ATGTGGGAGTCGATCCTTCTGACGTTGGCGGCGACCGCCGGAAACAACATCGGAAAAATTCTTCAGAAGAAGGGCACCGTCATTCTTCCGCCTCTCTCTTTGAAGCTCAAGGTGATAAGGGCATATGCCTTGAACAGAGCTTGGTTGATAGGTTTTCTGATGGATATATTTGGAGCCTTGCTCATGTTGAGAGCACTGTCTCTTGCTCCTGTATCTGTCATCCAACCGGTTTCTGGGTGTGGACTTGCTATCCTTTCGATATTTTCCCATTTTTATCTGAAGGAAATCATGAATGCTGTTGACTGGCTGGGGATTACTTTAGCAGGCATTGGCACTATAGGAGTTGGTGCTGGAGGTGAGGAGCAAAAGGCTTCTGCTATATCTATCTTCCATCTACCATGGTTGGCAATTGTGGTCGCCATCTTGTTTGTGCTCCTTAATGCTTGGCTACGAATCTACAGACGTCAACGAAAAGAACAGGAGTTGATGGAATATGAAGTTGTAGAAGAGATTATATATGGCTTGGAATCTGGCATTTTGTTTGGAATGGCATCTGTAATATCAAAGATGGGCTTTGTGTTCTTGGAGCAGGGTTTCCCCAGCATACTAGTTCCTATATGCTTGATAATCAGCATATGTTGTAGCGGTACAGGGTTTTACTACCAGCATGGGAGGGCAATTGTAGTCTCTACATGTGCTGCTGTGGCATCAATTGTTACTGGTGTTCTTGCTGGTATGCTTGCTTTGGGTGAAAGATTGCCTTCAGCGCCAACCGCTCGTCTTACACTTATGCTTGGATGGGTATTTATAATTGGTGGGGTGATTTTACTTGTGAGCTCAACACGGCTGGTGCGTCACCTTCCTCGGTCTTTACGACATGTTGATAAGAGCTTCAATGTTAGAAAATCCGGGTCTACCCGTGTTAGGGAGTCCAACCCTAGCACTGTTATCCAGGCATCAACTCTGCATCATTTGATGCCTACTTCTTCCAAAGAGAAGGCTTGA

Protein Analysis

334

Amino Acids

36.27

Weight (kDa)

9.71

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016033)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11960
fragaria_vesca FvH4_2g31600
malus_domestica MD08G1064900.v1.1 MD15G1056700.v1.1
prunus_persica Prupe.1G409300_v2.0.a1
pyrus_communis pycom08g05320 pycom15g05310
rosa_chinensis RchiOBHm_Chr6g0311221
rosa_laevigata RLG00000010426
rosa_roxburghii Rroxscaffold_7G00157890
rosa_rugosa Rorug06G0386600.1
rosa_samantha Rh6AG500700 Rh6BG511300 Rh6DG503600
rosa_wichuraiana Rw6G043600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 809
AatII GACGTC 1 cut(s) 466
AccB1I GGYRCC 1 cut(s) 74
AccBSI CCGCTC 1 cut(s) 776
AccI GTMKAC 1 cut(s) 914
AciI CCGC 5 cut(s) 29, 36, 89, 645, 774
AclWI GGATC 1 cut(s) 7
AcsI RAATTY 1 cut(s) 57
AcuI CTGAAG 3 cut(s) 47, 299, 747
AcyI GRCGYC 1 cut(s) 463
AfaI GTAC 1 cut(s) 649
AfiI CCNNNNNNNGG 3 cut(s) 233, 924, 925
AflIII ACRYGT 2 cut(s) 692, 877
AgeI ACCGGT 1 cut(s) 226
AgsI TTSAA 3 cut(s) 103, 133, 895
AhlI ACTAGT 1 cut(s) 607
AjnI CCWGG 1 cut(s) 951
AluBI AGCT 4 cut(s) 106, 140, 837, 891
AluI AGCT 4 cut(s) 106, 140, 837, 891
Alw21I GWGCWC 3 cut(s) 196, 435, 839
Alw26I GTCTC 2 cut(s) 204, 691
AlwI GGATC 1 cut(s) 7
ApeKI GCWGC 1 cut(s) 698
ApoI RAATTY 1 cut(s) 57
AsiGI ACCGGT 1 cut(s) 226
AspLEI GCGC 1 cut(s) 769
AsuC2I CCSGG 1 cut(s) 910
AsuHPI GGTGA 5 cut(s) 124, 368, 761, 832, 848
BaeGI GKGCMC 1 cut(s) 77
BanI GGYRCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 839
Bbv12I GWGCWC 3 cut(s) 196, 435, 839
BbvI GCAGC 1 cut(s) 685
BccI CCATC 6 cut(s) 154, 399, 428, 481, 562, 792
BceAI ACGGC 1 cut(s) 860
BciT130I CCWGG 1 cut(s) 953
BcnI CCSGG 1 cut(s) 910
BcoDI GTCTC 2 cut(s) 204, 691
BcuI ACTAGT 1 cut(s) 607
BfaI CTAG 2 cut(s) 608, 939
BfmI CTRYAG 2 cut(s) 336, 457
BfoI RGCGCY 1 cut(s) 770
BisI GCNGC 2 cut(s) 30, 699
BlsI GCNGC 2 cut(s) 31, 700
Bme1390I CCNGG 2 cut(s) 910, 953
BmiI GGNNCC 2 cut(s) 76, 175
BmrFI CCNGG 2 cut(s) 910, 953
BmsI GCATC 5 cut(s) 560, 716, 965, 966, 976
BplI GAGNNNNNCTC 2 cut(s) 165, 197
BpmI CTGGAG 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 910
BsaHI GRCGYC 1 cut(s) 463
BsaJI CCNNGG 2 cut(s) 398, 863
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 3 cut(s) 233, 924, 925
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 2 cut(s) 308, 724
BseBI CCWGG 1 cut(s) 953
BseDI CCNNGG 2 cut(s) 398, 863
BseGI GGATG 2 cut(s) 219, 803
BseLI CCNNNNNNNGG 3 cut(s) 233, 924, 925
BseNI ACTGG 2 cut(s) 308, 724
BseRI GAGGAG 1 cut(s) 374
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 1 cut(s) 685
BseYI CCCAGC 2 cut(s) 307, 599
Bsh1285I CGRYCG 1 cut(s) 36
BshNI GGYRCC 1 cut(s) 74
BshTI ACCGGT 1 cut(s) 226
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 3 cut(s) 196, 435, 839
BsiSI CCGG 3 cut(s) 39, 227, 909
BslI CCNNNNNNNGG 3 cut(s) 233, 924, 925
BsmAI GTCTC 2 cut(s) 204, 691
BsmI GAATGC 1 cut(s) 298
Bsp1286I GDGCHC 4 cut(s) 77, 196, 435, 839
Bsp143I GATC 1 cut(s) 12
Bsp19I CCATGG 1 cut(s) 398
BspACI CCGC 5 cut(s) 29, 36, 89, 645, 774
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 76, 175
BspPI GGATC 1 cut(s) 7
BspT107I GGYRCC 1 cut(s) 74
BsrBI CCGCTC 1 cut(s) 776
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 2 cut(s) 308, 724
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 398, 863
BssMI GATC 1 cut(s) 12
BssNI GRCGYC 1 cut(s) 463
BssT1I CCWWGG 1 cut(s) 398
Bst2UI CCWGG 1 cut(s) 953
Bst4CI ACNGT 3 cut(s) 79, 198, 946
Bst6I CTCTTC 1 cut(s) 501
BstACI GRCGYC 1 cut(s) 463
BstC8I GCNNGC 2 cut(s) 325, 741
BstDSI CCRYGG 1 cut(s) 398
BstF5I GGATG 2 cut(s) 219, 803
BstH2I RGCGCY 1 cut(s) 770
BstHHI GCGC 1 cut(s) 769
BstKTI GATC 1 cut(s) 15
BstMAI GTCTC 2 cut(s) 204, 691
BstMBI GATC 1 cut(s) 12
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 4 cut(s) 35, 704, 766, 773
BstNI CCWGG 1 cut(s) 953
BstNSI RCATGY 2 cut(s) 696, 881
BstSCI CCNGG 2 cut(s) 908, 951
BstSFI CTRYAG 2 cut(s) 336, 457
BstSLI GKGCMC 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 685
BtgI CCRYGG 1 cut(s) 398
BtsCI GGATG 2 cut(s) 219, 803
BtsIMutI CAGTG 2 cut(s) 194, 942
Cac8I GCNNGC 2 cut(s) 325, 741
CciI TCATGA 1 cut(s) 288
CfoI GCGC 1 cut(s) 769
Cfr10I RCCGGY 1 cut(s) 226
CseI GACGC 1 cut(s) 842
Csp6I GTAC 1 cut(s) 648
CspAI ACCGGT 1 cut(s) 226
CviAII CATG 6 cut(s) 184, 289, 399, 668, 693, 878
CviQI GTAC 1 cut(s) 648
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
EciI GGCGGA 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 837
Eco130I CCWWGG 1 cut(s) 398
Eco24I GRGCYC 1 cut(s) 839
Eco53kI GAGCTC 1 cut(s) 837
Eco57I CTGAAG 3 cut(s) 47, 299, 747
EcoICRI GAGCTC 1 cut(s) 837
EcoRII CCWGG 1 cut(s) 951
EcoT14I CCWWGG 1 cut(s) 398
EcoT38I GRGCYC 1 cut(s) 839
ErhI CCWWGG 1 cut(s) 398
FaeI CATG 6 cut(s) 187, 292, 402, 671, 696, 881
FalI AAGNNNNNCTT 4 cut(s) 557, 589, 745, 777
FatI CATG 6 cut(s) 183, 288, 398, 667, 692, 877
FauNDI CATATG 2 cut(s) 124, 635
FblI GTMKAC 1 cut(s) 914
Fnu4HI GCNGC 2 cut(s) 30, 699
FokI GGATG 2 cut(s) 206, 810
FriOI GRGCYC 1 cut(s) 839
Fsp4HI GCNGC 2 cut(s) 30, 699
FspBI CTAG 2 cut(s) 608, 939
GlaI GCGC 1 cut(s) 768
GluI GCNGC 2 cut(s) 30, 699
GsaI CCCAGC 2 cut(s) 311, 603
GsuI CTGGAG 1 cut(s) 372
HaeII RGCGCY 1 cut(s) 770
HapII CCGG 3 cut(s) 39, 227, 909
HgaI GACGC 1 cut(s) 842
HhaI GCGC 1 cut(s) 769
Hin1I GRCGYC 1 cut(s) 463
Hin1II CATG 6 cut(s) 187, 292, 402, 671, 696, 881
Hin6I GCGC 1 cut(s) 767
HinP1I GCGC 1 cut(s) 767
HincII GTYRAC 2 cut(s) 301, 467
HindII GTYRAC 2 cut(s) 301, 467
HinfI GANTC 4 cut(s) 8, 453, 527, 929
HpaII CCGG 3 cut(s) 39, 227, 909
HphI GGTGA 5 cut(s) 124, 368, 761, 832, 848
Hpy166II GTNNAC 4 cut(s) 242, 301, 467, 915
Hpy188I TCNGA 5 cut(s) 21, 53, 66, 159, 279
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 4 cut(s) 242, 301, 467, 915
HpyAV CCTTC 6 cut(s) 26, 64, 274, 771, 869, 991
HpyCH4III ACNGT 3 cut(s) 79, 198, 946
HpyCH4IV ACGT 2 cut(s) 23, 463
HpyCH4V TGCA 1 cut(s) 967
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 704, 766, 773
HpySE526I ACGT 2 cut(s) 23, 463
Hsp92I GRCGYC 1 cut(s) 463
Hsp92II CATG 6 cut(s) 187, 292, 402, 671, 696, 881
HspAI GCGC 1 cut(s) 767
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 5 cut(s) 173, 211, 361, 438, 586
Lsp1109I GCAGC 1 cut(s) 685
LweI GCATC 5 cut(s) 560, 716, 965, 966, 976
MaeI CTAG 2 cut(s) 608, 939
MaeII ACGT 2 cut(s) 23, 463
MaeIII GTNAC 2 cut(s) 715, 854
MalI GATC 1 cut(s) 14
MbiI CCGCTC 1 cut(s) 776
MboI GATC 1 cut(s) 12
MboII GAAGA 6 cut(s) 53, 77, 79, 379, 518, 978
MfeI CAATTG 3 cut(s) 408, 678, 711
MhlI GDGCHC 4 cut(s) 77, 196, 435, 839
MluCI AATT 5 cut(s) 57, 408, 678, 711, 810
MlyI GAGTC 2 cut(s) 17, 938
MmeI TCCRAC 2 cut(s) 247, 957
MnlI CCTC 5 cut(s) 102, 347, 352, 666, 873
MseI TTAA 1 cut(s) 438
MspI CCGG 3 cut(s) 39, 227, 909
MspR9I CCNGG 2 cut(s) 910, 953
MunI CAATTG 3 cut(s) 408, 678, 711
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 1 cut(s) 953
MwoI GCNNNNNNNGC 4 cut(s) 35, 704, 766, 773
NciI CCSGG 1 cut(s) 910
NcoI CCATGG 1 cut(s) 398
NdeI CATATG 2 cut(s) 124, 635
NdeII GATC 1 cut(s) 12
NlaIII CATG 6 cut(s) 187, 292, 402, 671, 696, 881
NlaIV GGNNCC 2 cut(s) 76, 175
NmuCI GTSAC 1 cut(s) 854
NspI RCATGY 2 cut(s) 696, 881
PagI TCATGA 1 cut(s) 288
PciI ACATGT 2 cut(s) 692, 877
PcsI WCGNNNNNNNCGW 3 cut(s) 29, 850, 871
PctI GAATGC 1 cut(s) 298
PfeI GAWTC 2 cut(s) 453, 527
PinAI ACCGGT 1 cut(s) 226
PkrI GCNGC 2 cut(s) 31, 700
PleI GAGTC 2 cut(s) 16, 937
PpsI GAGTC 2 cut(s) 16, 937
PscI ACATGT 2 cut(s) 692, 877
PsiI TTATAA 1 cut(s) 809
Psp124BI GAGCTC 1 cut(s) 839
Psp6I CCWGG 1 cut(s) 951
PspFI CCCAGC 2 cut(s) 307, 599
PspGI CCWGG 1 cut(s) 951
PspN4I GGNNCC 2 cut(s) 76, 175
RsaI GTAC 1 cut(s) 649
RsaNI GTAC 1 cut(s) 648
SacI GAGCTC 1 cut(s) 839
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 2 cut(s) 30, 699
Sau3AI GATC 1 cut(s) 12
SchI GAGTC 2 cut(s) 17, 938
ScrFI CCNGG 2 cut(s) 910, 953
SduI GDGCHC 4 cut(s) 77, 196, 435, 839
SfaNI GCATC 5 cut(s) 560, 716, 965, 966, 976
SfcI CTRYAG 2 cut(s) 336, 457
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SpeI ACTAGT 1 cut(s) 607
Sse9I AATT 5 cut(s) 57, 408, 678, 711, 810
SsiI CCGC 5 cut(s) 29, 36, 89, 645, 774
SspMI CTAG 2 cut(s) 608, 939
SstI GAGCTC 1 cut(s) 839
StyD4I CCNGG 2 cut(s) 908, 951
StyI CCWWGG 1 cut(s) 398
TaaI ACNGT 3 cut(s) 79, 198, 946
TaiI ACGT 2 cut(s) 26, 466
TaqI TCGA 2 cut(s) 11, 257
TaqII GACCGA 1 cut(s) 855
TasI AATT 5 cut(s) 57, 408, 678, 711, 810
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 2 cut(s) 453, 527
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 2 cut(s) 201, 949
TseFI GTSAC 1 cut(s) 854
TseI GCWGC 1 cut(s) 698
Tsp45I GTSAC 1 cut(s) 854
TspDTI ATGAA 2 cut(s) 305, 510
TspRI CASTG 2 cut(s) 201, 949
XapI RAATTY 1 cut(s) 57
XceI RCATGY 2 cut(s) 696, 881
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
XmiI GTMKAC 1 cut(s) 914
XspI CTAG 2 cut(s) 608, 939
ZraI GACGTC 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.