Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015090

Physical Location & Seq

Genomic Coordinates Reverse (-)

4136556 .. 4138792

Gene Structure 2237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGATTGGAGCTCGCGTCTTTTGTATCACCACGACAGCACTACGAAGATCACCAATCTTCTTCTTCCCCAAGATCCCGACCCGACCCGTTTTCAGATTATCACCAGCTACTAGACCCATCGTCGCCATGAGCACCACCAGCAAAAACCAAGAGGAACTCGATTCCATTTTCAAGCAGAAGCGGGTCGTGCGCTCCACTGTCCGCAAATCCCTAAAAGCCATGGACCCTTCTCTCCGAACCCAACAAGATGAGGCAATTCAGAAGACTGTTCTTGAAGCTCCCTGGTTCAAATCATGTAAGGGATTGTGTGCTTACATTAGCTGCAAATCTCTCAATGAAGTCGACACTTCTAAAATCCTCTCTGAGATTCTGCAACATCCAGATTCAAATACTCAGAAAAAGCTATATGTCCCTTGGGTGGAGGATAAGAACAGTAACATGCGCATGTTGCACATATCTCATATGGAAGACCTTGTTGCAAACTCAATGAACATTTTGGAACCAGCTCCTGTTGATGCCCAAGGGAATGACCGTGAAGATGTGTTGCAAGCAGATGAACCGATCGATTTGTTCATCTTGCCAGGTCTTGCGTTTGACAGATGTGGGCGACGTTTAGGTCGTGGAGGTGGCTACTACGACACTTTCTTGAAGAGATATCAGGACCGTGCAAAGGAGAAGGGTTGGAGATATCCACTTATGGTTGCATTGTCATACTCGCCTCAAATTCTTGAGGATGGAAGTATTCCTGTAACACCTAATGATGTTCTGATCGATGCCCTTGTGACACCTTCTGGTGTGGTTCCCATCACCCCTCGTGCTACCGAGAGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016882 GO:0018130 GO:0019438 GO:0019752 GO:0030272 GO:0034641 GO:0035999 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0046653 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

5-FTHF_cyc-lig

Protein Analysis

277

Amino Acids

31.23

Weight (kDa)

8.9

Isoelectric Point (pI)

54.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
5-FTHF_cyc-lig	PF01812	60 - 263	6.4e-31	5-formyltetrahydrofolate cyclo-ligase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13050 AT5G13050
fragaria_vesca	FvH4_5g15990
malus_domestica	MD06G1184000.v1.1
prunus_persica	Prupe.5G182700_v2.0.a1
pyrus_communis	pycom06g16300
rosa_chinensis	RchiOBHm_Chr7g0180081
rosa_laevigata	RLG00000005296
rosa_multiflora	Rmu_sc0017616.1_g000003 Rmu_ssc0000119.1_g000029
rosa_roxburghii	Rroxscaffold_3G00273130
rosa_rugosa	Rorug06G0430400
rosa_samantha	Rh7AG030700 Rh7CG032400 Rh7DG031400
rosa_wichuraiana	Rw7G002560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	615
Acc16I	TGCGCA	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	1 cut(s)	15
AciI	CCGC	2 cut(s)	181, 202
AclWI	GGATC	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	723
AfiI	CCNNNNNNNGG	2 cut(s)	418, 670
AgsI	TTSAA	5 cut(s)	172, 275, 289, 387, 649
AhdI	GACNNNNNGTC	1 cut(s)	119
AjnI	CCWGG	2 cut(s)	281, 580
AluBI	AGCT	6 cut(s)	11, 107, 278, 321, 403, 506
AluI	AGCT	6 cut(s)	11, 107, 278, 321, 403, 506
Alw21I	GWGCWC	2 cut(s)	13, 134
AlwI	GGATC	1 cut(s)	67
AlwNI	CAGNNNCTG	1 cut(s)	509
ApeKI	GCWGC	1 cut(s)	321
ApoI	RAATTY	1 cut(s)	723
AspLEI	GCGC	2 cut(s)	192, 444
AspS9I	GGNCC	2 cut(s)	223, 661
AsuHPI	GGTGA	4 cut(s)	19, 42, 93, 799
AvaII	GGWCC	2 cut(s)	223, 661
BanII	GRGCYC	1 cut(s)	13
BauI	CACGAG	1 cut(s)	813
BbsI	GAAGAC	2 cut(s)	269, 474
Bbv12I	GWGCWC	2 cut(s)	13, 134
BbvI	GCAGC	1 cut(s)	308
BccI	CCATC	3 cut(s)	125, 728, 812
BciT130I	CCWGG	2 cut(s)	283, 582
BfaI	CTAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
Bme1390I	CCNGG	2 cut(s)	283, 582
Bme18I	GGWCC	2 cut(s)	223, 661
BmeRI	GACNNNNNGTC	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	223, 661
BmiI	GGNNCC	3 cut(s)	225, 501, 801
BmrFI	CCNGG	2 cut(s)	283, 582
BmsI	GCATC	2 cut(s)	505, 763
BpiI	GAAGAC	2 cut(s)	269, 474
BpuEI	CTTGAG	1 cut(s)	749
Bsa29I	ATCGAT	2 cut(s)	564, 771
BsaJI	CCNNGG	4 cut(s)	219, 281, 413, 520
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 670
BseBI	CCWGG	2 cut(s)	283, 582
BseCI	ATCGAT	2 cut(s)	564, 771
BseDI	CCNNGG	4 cut(s)	219, 281, 413, 520
BseGI	GGATG	2 cut(s)	376, 739
BseLI	CCNNNNNNNGG	2 cut(s)	418, 670
BseMII	CTCAG	2 cut(s)	354, 407
BseXI	GCAGC	1 cut(s)	308
Bsh1236I	CGCG	1 cut(s)	15
Bsh1285I	CGRYCG	1 cut(s)	564
BshVI	ATCGAT	2 cut(s)	564, 771
BsiEI	CGRYCG	1 cut(s)	564
BsiHKAI	GWGCWC	2 cut(s)	13, 134
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	418, 670
BsmFI	GGGAC	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	13, 134
Bsp143I	GATC	4 cut(s)	47, 72, 561, 768
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	2 cut(s)	181, 202
BspCNI	CTCAG	2 cut(s)	355, 406
BspDI	ATCGAT	2 cut(s)	564, 771
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	3 cut(s)	225, 501, 801
BspPI	GGATC	1 cut(s)	67
BssECI	CCNNGG	4 cut(s)	219, 281, 413, 520
BssMI	GATC	4 cut(s)	47, 72, 561, 768
BssSI	CACGAG	1 cut(s)	813
BssT1I	CCWWGG	3 cut(s)	219, 413, 520
Bst2BI	CACGAG	1 cut(s)	813
Bst2UI	CCWGG	2 cut(s)	283, 582
Bst4CI	ACNGT	5 cut(s)	199, 268, 434, 533, 665
Bst6I	CTCTTC	1 cut(s)	644
BstC8I	GCNNGC	2 cut(s)	13, 549
BstDEI	CTNAG	2 cut(s)	363, 393
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	376, 739
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	192, 444
BstKTI	GATC	4 cut(s)	50, 75, 564, 771
BstMBI	GATC	4 cut(s)	47, 72, 561, 768
BstMCI	CGRYCG	1 cut(s)	564
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 187, 448
BstNI	CCWGG	2 cut(s)	283, 582
BstNSI	RCATGY	3 cut(s)	442, 448, 832
BstSCI	CCNGG	2 cut(s)	281, 580
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	308
BstV2I	GAAGAC	2 cut(s)	269, 474
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
Bsu15I	ATCGAT	2 cut(s)	564, 771
BsuTUI	ATCGAT	2 cut(s)	564, 771
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	376, 739
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	2 cut(s)	13, 549
CaiI	CAGNNNCTG	1 cut(s)	509
CfoI	GCGC	2 cut(s)	192, 444
Cfr13I	GGNCC	2 cut(s)	223, 661
ClaI	ATCGAT	2 cut(s)	564, 771
CseI	GACGC	1 cut(s)	4
CviAII	CATG	6 cut(s)	127, 220, 294, 439, 445, 829
CviJI	RGCY	8 cut(s)	11, 107, 218, 278, 321, 403, 506, 630
CviKI_1	RGCY	8 cut(s)	11, 107, 218, 278, 321, 403, 506, 630
DdeI	CTNAG	2 cut(s)	363, 393
DpnI	GATC	4 cut(s)	49, 74, 563, 770
DpnII	GATC	4 cut(s)	47, 72, 561, 768
DrdI	GACNNNNNNGTC	1 cut(s)	615
DriI	GACNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	615
Eam1104I	CTCTTC	1 cut(s)	644
Eam1105I	GACNNNNNGTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	644
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	3 cut(s)	219, 413, 520
Eco24I	GRGCYC	1 cut(s)	13
Eco32I	GATATC	2 cut(s)	656, 689
Eco47I	GGWCC	2 cut(s)	223, 661
Eco53kI	GAGCTC	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	281, 580
EcoRV	GATATC	2 cut(s)	656, 689
EcoT14I	CCWWGG	3 cut(s)	219, 413, 520
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	3 cut(s)	219, 413, 520
FaeI	CATG	6 cut(s)	130, 223, 297, 442, 448, 832
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	6 cut(s)	126, 219, 293, 438, 444, 828
FauI	CCCGC	1 cut(s)	174
FauNDI	CATATG	1 cut(s)	462
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	1 cut(s)	322
FokI	GGATG	2 cut(s)	363, 746
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	322
FspAI	RTGCGCAY	1 cut(s)	443
FspBI	CTAG	1 cut(s)	111
FspI	TGCGCA	1 cut(s)	443
GlaI	GCGC	2 cut(s)	191, 443
GluI	GCNGC	1 cut(s)	322
HgaI	GACGC	1 cut(s)	4
HhaI	GCGC	2 cut(s)	192, 444
Hin1II	CATG	6 cut(s)	130, 223, 297, 442, 448, 832
Hin6I	GCGC	2 cut(s)	190, 442
HinP1I	GCGC	2 cut(s)	190, 442
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	3 cut(s)	161, 367, 383
HphI	GGTGA	4 cut(s)	19, 42, 93, 799
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	6 cut(s)	95, 236, 261, 364, 396, 768
Hpy188III	TCNNGA	6 cut(s)	76, 272, 380, 646, 659, 728
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	2 cut(s)	125, 612
HpyAV	CCTTC	3 cut(s)	237, 670, 798
HpyCH4III	ACNGT	5 cut(s)	199, 268, 434, 533, 665
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	7 cut(s)	324, 373, 451, 479, 547, 668, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 187, 448
HpyF3I	CTNAG	2 cut(s)	363, 393
HpySE526I	ACGT	1 cut(s)	610
Hsp92II	CATG	6 cut(s)	130, 223, 297, 442, 448, 832
HspAI	GCGC	2 cut(s)	190, 442
Kzo9I	GATC	4 cut(s)	47, 72, 561, 768
LmnI	GCTCC	4 cut(s)	8, 197, 283, 511
Lsp1109I	GCAGC	1 cut(s)	308
LweI	GCATC	2 cut(s)	505, 763
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	3 cut(s)	434, 748, 781
MalI	GATC	4 cut(s)	49, 74, 563, 770
MboI	GATC	4 cut(s)	47, 72, 561, 768
MboII	GAAGA	8 cut(s)	49, 52, 55, 57, 274, 479, 548, 661
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	2 cut(s)	13, 134
MluCI	AATT	2 cut(s)	255, 723
MmeI	TCCRAC	1 cut(s)	662
MnlI	CCTC	8 cut(s)	145, 244, 368, 415, 617, 724, 729, 822
MslI	CAYNNNNRTG	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	283, 582
MvaI	CCWGG	2 cut(s)	283, 582
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	138, 187, 448
NcoI	CCATGG	1 cut(s)	219
NdeI	CATATG	1 cut(s)	462
NdeII	GATC	4 cut(s)	47, 72, 561, 768
NlaIII	CATG	6 cut(s)	130, 223, 297, 442, 448, 832
NlaIV	GGNNCC	3 cut(s)	225, 501, 801
NmuCI	GTSAC	1 cut(s)	781
NsbI	TGCGCA	1 cut(s)	443
NspI	RCATGY	3 cut(s)	442, 448, 832
PcsI	WCGNNNNNNNCGW	1 cut(s)	616
PfeI	GAWTC	3 cut(s)	161, 367, 383
PkrI	GCNGC	1 cut(s)	323
Ple19I	CGATCG	1 cut(s)	564
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	281, 580
PspGI	CCWGG	2 cut(s)	281, 580
PspN4I	GGNNCC	3 cut(s)	225, 501, 801
PspPI	GGNCC	2 cut(s)	223, 661
PstNI	CAGNNNCTG	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	72
PvuI	CGATCG	1 cut(s)	564
RseI	CAYNNNNRTG	1 cut(s)	443
SacI	GAGCTC	1 cut(s)	13
SalI	GTCGAC	1 cut(s)	341
SatI	GCNGC	1 cut(s)	322
Sau3AI	GATC	4 cut(s)	47, 72, 561, 768
Sau96I	GGNCC	2 cut(s)	223, 661
ScrFI	CCNGG	2 cut(s)	283, 582
SduI	GDGCHC	2 cut(s)	13, 134
SfaNI	GCATC	2 cut(s)	505, 763
SinI	GGWCC	2 cut(s)	223, 661
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	728
SmoI	CTYRAG	1 cut(s)	728
Sse9I	AATT	2 cut(s)	255, 723
SsiI	CCGC	2 cut(s)	181, 202
SspMI	CTAG	1 cut(s)	111
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	2 cut(s)	281, 580
StyI	CCWWGG	3 cut(s)	219, 413, 520
TaaI	ACNGT	5 cut(s)	199, 268, 434, 533, 665
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	4 cut(s)	159, 342, 564, 771
TasI	AATT	2 cut(s)	255, 723
TfiI	GAWTC	3 cut(s)	161, 367, 383
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	1 cut(s)	321
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	4 cut(s)	351, 503, 562, 570
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	2 cut(s)	223, 661
XapI	RAATTY	1 cut(s)	723
XceI	RCATGY	3 cut(s)	442, 448, 832
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.