Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0015090

Physical Location & Seq

Genomic Coordinates Reverse (-)

66580441 .. 66581326

Gene Structure 886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005296

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGACAACGAGGACACATACATACATGTCAAGAAGGCTGTTGGTGGCGCTGATGACCCAGCAGTGCACATTAGCAGCGCCACCTCCACCCGCCACTGTCTCCCGCCGCGCTGCTATCCTACGCCGCCCACCACCGCCTTCATTCTCCCAACGCTTCATCACAATGACCACCAACAACCAAGACAACCTCGATGACTTGTTCAAGCAAAAACGCATGCTCCGAACTAAGGTCCGGAAGGCCCTGAAGTCAATGGACCCAGTACTCAGATCCCAGGAAGATGATGCGATTCAGAGGATTGTGTTGGAAGCTCCATGGTTTAAGTCTAGTGAGAGATTGTGTGCTTATATAAGCTGTGCTACTTTGCGTGAAGTTGATACTTCTAAAGTGTTGGGTGAGATTCTAAAGAGTAAAGATGGTGATGTGCAAGTGAGGAAGAAGCTTTATGTGCCGCGTGTGGAGGACAAGAATAGTCACATGAGAATGCTCAACATTTCCAGTGTTGATGATCTGGTTGCGAATTCGATGGATATTTTAGAACCGGCTGCGGTGGATGCTGATGGAAATGAACGCGAAGATGGTAGTGTTTCACTTACTTTTTACAAGCCTTATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016882 GO:0018130 GO:0019438 GO:0019752 GO:0030272 GO:0034641 GO:0035999 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0046653 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

5-FTHF_cyc-lig

Protein Analysis

205

Amino Acids

23.22

Weight (kDa)

9.42

Isoelectric Point (pI)

56.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
5-FTHF_cyc-lig	PF01812	70 - 183	3.1e-08	5-formyltetrahydrofolate cyclo-ligase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13050 AT5G13050
fragaria_vesca	FvH4_5g15990
malus_domestica	MD06G1184000.v1.1
prunus_persica	Prupe.5G182700_v2.0.a1
pyrus_communis	pycom06g16300
rosa_chinensis	RchiOBHm_Chr7g0180081
rosa_laevigata	RLG00000005296
rosa_multiflora	Rmu_sc0017616.1_g000003 Rmu_ssc0000119.1_g000029
rosa_roxburghii	Rroxscaffold_3G00273130
rosa_rugosa	Rorug06G0430400
rosa_samantha	Rh7AG030700 Rh7CG032400 Rh7DG031400
rosa_wichuraiana	Rw7G002560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	108, 451, 570
AccIII	TCCGGA	1 cut(s)	231
AciI	CCGC	7 cut(s)	90, 103, 106, 124, 134, 449, 545
AclWI	GGATC	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	517
AcuI	CTGAAG	1 cut(s)	263
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	226
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	3 cut(s)	308, 351, 439
AluI	AGCT	3 cut(s)	308, 351, 439
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	103
Alw44I	GTGCAC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	231
AoxI	GGCC	1 cut(s)	237
ApaLI	GTGCAC	1 cut(s)	64
ApeKI	GCWGC	3 cut(s)	74, 110, 542
ApoI	RAATTY	1 cut(s)	517
AspLEI	GCGC	3 cut(s)	49, 79, 110
AspS9I	GGNCC	3 cut(s)	229, 238, 253
AsuHPI	GGTGA	2 cut(s)	404, 428
AvaII	GGWCC	2 cut(s)	229, 253
BaeGI	GKGCMC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	3 cut(s)	86, 97, 529
BccI	CCATC	4 cut(s)	407, 517, 551, 569
BciT130I	CCWGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	1 cut(s)	324
BfoI	RGCGCY	2 cut(s)	50, 80
BisI	GCNGC	6 cut(s)	75, 106, 111, 124, 449, 543
BlsI	GCNGC	6 cut(s)	76, 107, 112, 125, 450, 544
BmcAI	AGTACT	1 cut(s)	261
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	2 cut(s)	229, 253
BmgT120I	GGNCC	3 cut(s)	229, 238, 253
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	272
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	2 cut(s)	271, 541
BmuI	ACTGGG	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	270, 311
BsaWI	WCCGGW	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse118I	RCCGGY	1 cut(s)	538
Bse1I	ACTGG	2 cut(s)	257, 495
BseAI	TCCGGA	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	2 cut(s)	270, 311
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	277
BseNI	ACTGG	2 cut(s)	257, 495
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	86, 97, 529
BseYI	CCCAGC	1 cut(s)	57
Bsh1236I	CGCG	3 cut(s)	108, 451, 570
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	232, 539
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	103
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp13I	TCCGGA	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	266, 505
Bsp19I	CCATGG	1 cut(s)	311
BspACI	CCGC	7 cut(s)	90, 103, 106, 124, 134, 449, 545
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	276
BspEI	TCCGGA	1 cut(s)	231
BspFNI	CGCG	3 cut(s)	108, 451, 570
BspLI	GGNNCC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	538
BsrI	ACTGG	2 cut(s)	257, 495
BssAI	RCCGGY	1 cut(s)	538
BssECI	CCNNGG	2 cut(s)	270, 311
BssMI	GATC	2 cut(s)	266, 505
BssT1I	CCWWGG	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	2 cut(s)	225, 263
BstDSI	CCRYGG	1 cut(s)	311
BstF5I	GGATG	1 cut(s)	556
BstFNI	CGCG	3 cut(s)	108, 451, 570
BstH2I	RGCGCY	2 cut(s)	50, 80
BstHHI	GCGC	3 cut(s)	49, 79, 110
BstKTI	GATC	2 cut(s)	269, 508
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	2 cut(s)	266, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	445, 551
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	2 cut(s)	28, 217
BstSCI	CCNGG	1 cut(s)	270
BstSLI	GKGCMC	1 cut(s)	68
BstUI	CGCG	3 cut(s)	108, 451, 570
BstV1I	GCAGC	3 cut(s)	86, 97, 529
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	556
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	3 cut(s)	68, 93, 502
Cac8I	GCNNGC	1 cut(s)	215
CfoI	GCGC	3 cut(s)	49, 79, 110
Cfr10I	RCCGGY	1 cut(s)	538
Cfr13I	GGNCC	3 cut(s)	229, 238, 253
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	4 cut(s)	25, 214, 312, 475
CviJI	RGCY	7 cut(s)	37, 239, 308, 351, 439, 542, 604
CviKI_1	RGCY	7 cut(s)	37, 239, 308, 351, 439, 542, 604
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	2 cut(s)	225, 263
DpnI	GATC	2 cut(s)	268, 507
DpnII	GATC	2 cut(s)	266, 505
Eco130I	CCWWGG	1 cut(s)	311
Eco47I	GGWCC	2 cut(s)	229, 253
Eco57I	CTGAAG	1 cut(s)	263
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	4 cut(s)	28, 217, 315, 478
FaiI	YATR	9 cut(s)	18, 22, 26, 215, 313, 345, 347, 444, 476
FatI	CATG	4 cut(s)	24, 213, 311, 474
FauI	CCCGC	2 cut(s)	97, 110
Fnu4HI	GCNGC	6 cut(s)	75, 106, 111, 124, 449, 543
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	6 cut(s)	75, 106, 111, 124, 449, 543
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	3 cut(s)	48, 78, 109
GluI	GCNGC	6 cut(s)	75, 106, 111, 124, 449, 543
GsaI	CCCAGC	1 cut(s)	61
HaeII	RGCGCY	2 cut(s)	50, 80
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	2 cut(s)	232, 539
HhaI	GCGC	3 cut(s)	49, 79, 110
Hin1II	CATG	4 cut(s)	28, 217, 315, 478
Hin6I	GCGC	3 cut(s)	47, 77, 108
HinP1I	GCGC	3 cut(s)	47, 77, 108
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	2 cut(s)	286, 397
HpaII	CCGG	2 cut(s)	232, 539
HphI	GGTGA	2 cut(s)	404, 428
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	3 cut(s)	221, 266, 291
Hpy188III	TCNNGA	2 cut(s)	30, 232
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	3 cut(s)	27, 147, 229
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	2 cut(s)	66, 424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	445, 551
HpyF3I	CTNAG	2 cut(s)	225, 263
Hsp92II	CATG	4 cut(s)	28, 217, 315, 478
HspAI	GCGC	3 cut(s)	47, 77, 108
Kpn2I	TCCGGA	1 cut(s)	231
Kzo9I	GATC	2 cut(s)	266, 505
LmnI	GCTCC	2 cut(s)	222, 313
LpnPI	CCDG	9 cut(s)	71, 245, 254, 257, 270, 284, 494, 508, 552
Lsp1109I	GCAGC	3 cut(s)	86, 97, 529
LweI	GCATC	2 cut(s)	271, 541
MaeI	CTAG	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	2 cut(s)	268, 507
MboI	GATC	2 cut(s)	266, 505
MboII	GAAGA	3 cut(s)	287, 445, 584
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	1 cut(s)	517
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	6 cut(s)	3, 93, 197, 285, 423, 451
MroI	TCCGGA	1 cut(s)	231
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	2 cut(s)	161, 479
MspI	CCGG	2 cut(s)	232, 539
MspR9I	CCNGG	1 cut(s)	272
Mva1269I	GAATGC	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	272
MvnI	CGCG	3 cut(s)	108, 451, 570
MwoI	GCNNNNNNNGC	2 cut(s)	445, 551
NcoI	CCATGG	1 cut(s)	311
NdeII	GATC	2 cut(s)	266, 505
NlaIII	CATG	4 cut(s)	28, 217, 315, 478
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	470
NspI	RCATGY	2 cut(s)	28, 217
PaeI	GCATGC	1 cut(s)	217
PciI	ACATGT	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	217
PctI	GAATGC	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	286, 397
PkrI	GCNGC	6 cut(s)	76, 107, 112, 125, 450, 544
PscI	ACATGT	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	270
PspFI	CCCAGC	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	3 cut(s)	229, 238, 253
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
RseI	CAYNNNNRTG	2 cut(s)	161, 479
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	6 cut(s)	75, 106, 111, 124, 449, 543
Sau3AI	GATC	2 cut(s)	266, 505
Sau96I	GGNCC	3 cut(s)	229, 238, 253
ScaI	AGTACT	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	6 cut(s)	85, 189, 231, 310, 353, 441
SfaNI	GCATC	2 cut(s)	271, 541
SinI	GGWCC	2 cut(s)	229, 253
SmiMI	CAYNNNNRTG	2 cut(s)	161, 479
SphI	GCATGC	1 cut(s)	217
Sse9I	AATT	1 cut(s)	517
SsiI	CCGC	7 cut(s)	90, 103, 106, 124, 134, 449, 545
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	311
TaaI	ACNGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	189, 521
TasI	AATT	1 cut(s)	517
TatI	WGTACW	1 cut(s)	259
TauI	GCSGC	3 cut(s)	108, 126, 451
TfiI	GAWTC	2 cut(s)	286, 397
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	3 cut(s)	68, 100, 502
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	3 cut(s)	74, 110, 542
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	3 cut(s)	129, 145, 579
TspRI	CASTG	3 cut(s)	68, 100, 502
VneI	GTGCAC	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	229, 253
XapI	RAATTY	1 cut(s)	517
XceI	RCATGY	2 cut(s)	28, 217
XspI	CTAG	1 cut(s)	324
ZrmI	AGTACT	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.