Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0015090

Physical Location & Seq

Genomic Coordinates Forward (+)

32229555 .. 32232327

Gene Structure 2773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1184000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTCTGGTAGGTTGGTGGTGGCGCTGATGACCAAGTGGTGCACATTACCAACCCAACCAGCCGCAGCACCTATTCCCCTCCACCTCTCCCGCCCTGCCCTCCTCCGCCCACCACCTCTATATGCACCACCGCGCGCCACCCGGACAATTGCAATGAACACCACCAATCATGACCAAGACTCCCTCGACGCTCTATTCAAGCAGAAAAGAATCCTCCGCTCAAATGTCCGCAAAGCCCTCAAATCCATGGATCCGACACTCAGATCCCATGAAGATAATGCAATTCAGAATATTGTATTGGAAGCTCCATGGTTTAAATCTTGTCAAAGATTATGTGCATATATAAGCTGCAGTGCTTTGAGGGAAGTTGATACTTCAAAGTTACTGTCTGAAATTCTTCAGAGTCCACTTAAAGAGGGTGATGTGCAGCTGAGGAAAAAGCTCTATGTTCCGCGTGTTGAGGACAAGAACAGTCACATGAGAATGCTGAACATTTCGTGTATTGATGATCTTGTGGCGAATTCGATGAATATTTTGGAGCCTGCTCCGGTGGATTCTGGTGGAAATGAACGCGAAGATGTAATGCAGGCAAGTGACCCAGTTGATTTGCTCCTCTTACCGGGACTAGCGTTTGACAGATCTGGGAGACGCTTGGGTCGTGGTGGAGGTTATTATGATACCTTCCTGACAAGGTACCAAGAGCTTGCAAAGGCACACAATTGGAATCAGCCGCTCCTTGTTGCACTGTCCTATTCTACACAGATATTGGATGAAGGAGTTATTCCAATCACTCCACATGACGTACTGGTGGATGCGCTTGTGTCCCCAGCGGGTGTGATTCCCATAAGCCCAGCCGCTTTCGACAGAATAAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016882 GO:0018130 GO:0019438 GO:0019752 GO:0030272 GO:0034641 GO:0035999 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0046653 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

5-FTHF_cyc-lig

Protein Analysis

293

Amino Acids

32.43

Weight (kDa)

8.56

Isoelectric Point (pI)

56.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
5-FTHF_cyc-lig	PF01812	69 - 276	6.6e-32	5-formyltetrahydrofolate cyclo-ligase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13050 AT5G13050
fragaria_vesca	FvH4_5g15990
malus_domestica	MD06G1184000.v1.1
prunus_persica	Prupe.5G182700_v2.0.a1
pyrus_communis	pycom06g16300
rosa_chinensis	RchiOBHm_Chr7g0180081
rosa_laevigata	RLG00000005296
rosa_multiflora	Rmu_sc0017616.1_g000003 Rmu_ssc0000119.1_g000029
rosa_roxburghii	Rroxscaffold_3G00273130
rosa_rugosa	Rorug06G0430400
rosa_samantha	Rh7AG030700 Rh7CG032400 Rh7DG031400
rosa_wichuraiana	Rw7G002560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	654
Acc65I	GGTACC	1 cut(s)	693
AccB1I	GGYRCC	1 cut(s)	693
AccBSI	CCGCTC	2 cut(s)	219, 733
AccII	CGCG	4 cut(s)	133, 135, 454, 573
AclWI	GGATC	3 cut(s)	245, 258, 258
AcsI	RAATTY	2 cut(s)	393, 520
AcuI	CTGAAG	1 cut(s)	383
AfaI	GTAC	2 cut(s)	695, 804
AfiI	CCNNNNNNNGG	1 cut(s)	619
AgsI	TTSAA	2 cut(s)	199, 378
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AluBI	AGCT	6 cut(s)	305, 348, 430, 442, 703, 874
AluI	AGCT	6 cut(s)	305, 348, 430, 442, 703, 874
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	640
Alw44I	GTGCAC	1 cut(s)	40
AlwI	GGATC	3 cut(s)	245, 258, 258
ApaLI	GTGCAC	1 cut(s)	40
ApeKI	GCWGC	3 cut(s)	65, 348, 427
ApoI	RAATTY	2 cut(s)	393, 520
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
Asp700I	GAANNNNTTC	1 cut(s)	396
Asp718I	GGTACC	1 cut(s)	693
AspLEI	GCGC	4 cut(s)	25, 135, 137, 817
AsuC2I	CCSGG	2 cut(s)	142, 621
AsuHPI	GGTGA	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	44
BamHI	GGATCC	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	693
Bbv12I	GWGCWC	1 cut(s)	44
BbvCI	CCTCAGC	1 cut(s)	431
BbvI	GCAGC	3 cut(s)	77, 335, 439
BcnI	CCSGG	2 cut(s)	142, 621
BcoDI	GTCTC	1 cut(s)	640
BfaI	CTAG	1 cut(s)	626
BfmI	CTRYAG	1 cut(s)	349
BfoI	RGCGCY	1 cut(s)	26
BglII	AGATCT	1 cut(s)	638
BisI	GCNGC	6 cut(s)	63, 66, 349, 428, 731, 855
BlsI	GCNGC	6 cut(s)	64, 67, 350, 429, 732, 856
Bme1390I	CCNGG	2 cut(s)	142, 621
BmiI	GGNNCC	3 cut(s)	252, 540, 695
BmrFI	CCNGG	2 cut(s)	142, 621
BmrI	ACTGGG	1 cut(s)	593
BmsI	GCATC	1 cut(s)	802
BmuI	ACTGGG	1 cut(s)	593
Bpu10I	CCTNAGC	1 cut(s)	431
BpuMI	CCSGG	2 cut(s)	142, 621
BsaJI	CCNNGG	2 cut(s)	246, 308
BsaWI	WCCGGW	1 cut(s)	547
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	1 cut(s)	619
Bse1I	ACTGG	2 cut(s)	599, 810
Bse3DI	GCAATG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	246, 308
BseGI	GGATG	2 cut(s)	775, 817
BseLI	CCNNNNNNNGG	1 cut(s)	619
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	274, 422
BseNI	ACTGG	2 cut(s)	599, 810
BsePI	GCGCGC	1 cut(s)	133
BseRI	GAGGAG	2 cut(s)	92, 602
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	3 cut(s)	77, 335, 439
BseYI	CCCAGC	2 cut(s)	826, 850
BsgI	GTGCAG	1 cut(s)	446
Bsh1236I	CGCG	4 cut(s)	133, 135, 454, 573
BshNI	GGYRCC	1 cut(s)	693
BsiHKAI	GWGCWC	1 cut(s)	44
BsiSI	CCGG	3 cut(s)	142, 548, 620
BslFI	GGGAC	2 cut(s)	636, 808
BslI	CCNNNNNNNGG	1 cut(s)	619
BsmAI	GTCTC	1 cut(s)	640
BsmBI	CGTCTC	1 cut(s)	640
BsmFI	GGGAC	2 cut(s)	636, 808
BsmI	GAATGC	1 cut(s)	489
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	4 cut(s)	250, 263, 508, 638
Bsp19I	CCATGG	2 cut(s)	246, 308
BspCNI	CTCAG	2 cut(s)	273, 423
BspFNI	CGCG	4 cut(s)	133, 135, 454, 573
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	3 cut(s)	252, 540, 695
BspMAI	CTGCAG	1 cut(s)	353
BspPI	GGATC	3 cut(s)	245, 258, 258
BspT107I	GGYRCC	1 cut(s)	693
BsrBI	CCGCTC	2 cut(s)	219, 733
BsrDI	GCAATG	1 cut(s)	159
BsrI	ACTGG	2 cut(s)	599, 810
BssECI	CCNNGG	2 cut(s)	246, 308
BssHII	GCGCGC	1 cut(s)	133
BssMI	GATC	4 cut(s)	250, 263, 508, 638
BssT1I	CCWWGG	2 cut(s)	246, 308
Bst4CI	ACNGT	3 cut(s)	387, 473, 747
BstC8I	GCNNGC	4 cut(s)	135, 543, 588, 705
BstDEI	CTNAG	2 cut(s)	260, 431
BstDSI	CCRYGG	2 cut(s)	246, 308
BstF5I	GGATG	2 cut(s)	775, 817
BstFNI	CGCG	4 cut(s)	133, 135, 454, 573
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	4 cut(s)	25, 135, 137, 817
BstKTI	GATC	4 cut(s)	253, 266, 511, 641
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	4 cut(s)	250, 263, 508, 638
BstSCI	CCNGG	2 cut(s)	140, 619
BstSFI	CTRYAG	1 cut(s)	349
BstSLI	GKGCMC	1 cut(s)	44
BstUI	CGCG	4 cut(s)	133, 135, 454, 573
BstV1I	GCAGC	3 cut(s)	77, 335, 439
BstX2I	RGATCY	3 cut(s)	250, 263, 638
BstYI	RGATCY	3 cut(s)	250, 263, 638
BtgI	CCRYGG	2 cut(s)	246, 308
BtsCI	GGATG	2 cut(s)	775, 817
BtsI	GCAGTG	1 cut(s)	358
BtsIMutI	CAGTG	2 cut(s)	358, 743
Cac8I	GCNNGC	4 cut(s)	135, 543, 588, 705
CciI	TCATGA	1 cut(s)	169
CfoI	GCGC	4 cut(s)	25, 135, 137, 817
CseI	GACGC	2 cut(s)	197, 657
Csp6I	GTAC	2 cut(s)	694, 803
CviAII	CATG	6 cut(s)	170, 247, 269, 309, 478, 797
CviQI	GTAC	2 cut(s)	694, 803
DdeI	CTNAG	2 cut(s)	260, 431
DpnI	GATC	4 cut(s)	252, 265, 510, 640
DpnII	GATC	4 cut(s)	250, 263, 508, 638
DraI	TTTAAA	1 cut(s)	316
DrdI	GACNNNNNNGTC	1 cut(s)	654
DseDI	GACNNNNNNGTC	1 cut(s)	654
EciI	GGCGGA	1 cut(s)	95
Eco130I	CCWWGG	2 cut(s)	246, 308
Eco57I	CTGAAG	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	520
EcoT14I	CCWWGG	2 cut(s)	246, 308
ErhI	CCWWGG	2 cut(s)	246, 308
Esp3I	CGTCTC	1 cut(s)	640
FaeI	CATG	6 cut(s)	173, 250, 272, 312, 481, 800
FaqI	GGGAC	2 cut(s)	636, 808
FatI	CATG	6 cut(s)	169, 246, 268, 308, 477, 796
FauI	CCCGC	2 cut(s)	98, 823
Fnu4HI	GCNGC	6 cut(s)	63, 66, 349, 428, 731, 855
FokI	GGATG	2 cut(s)	782, 824
Fsp4HI	GCNGC	6 cut(s)	63, 66, 349, 428, 731, 855
FspBI	CTAG	1 cut(s)	626
GlaI	GCGC	4 cut(s)	24, 134, 136, 816
GluI	GCNGC	6 cut(s)	63, 66, 349, 428, 731, 855
GsaI	CCCAGC	2 cut(s)	830, 854
HaeII	RGCGCY	1 cut(s)	26
HapII	CCGG	3 cut(s)	142, 548, 620
HgaI	GACGC	2 cut(s)	197, 657
HhaI	GCGC	4 cut(s)	25, 135, 137, 817
Hin1II	CATG	6 cut(s)	173, 250, 272, 312, 481, 800
Hin6I	GCGC	4 cut(s)	23, 133, 135, 815
HinP1I	GCGC	4 cut(s)	23, 133, 135, 815
HindIII	AAGCTT	1 cut(s)	872
HinfI	GANTC	6 cut(s)	179, 210, 403, 554, 724, 838
HpaII	CCGG	3 cut(s)	142, 548, 620
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	2 cut(s)	42, 407
Hpy188I	TCNGA	5 cut(s)	255, 263, 288, 391, 402
Hpy188III	TCNNGA	2 cut(s)	170, 685
Hpy8I	GTNNAC	2 cut(s)	42, 407
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	691, 767
HpyCH4III	ACNGT	3 cut(s)	387, 473, 747
HpyCH4IV	ACGT	1 cut(s)	801
HpyF3I	CTNAG	2 cut(s)	260, 431
HpySE526I	ACGT	1 cut(s)	801
Hsp92II	CATG	6 cut(s)	173, 250, 272, 312, 481, 800
HspAI	GCGC	4 cut(s)	23, 133, 135, 815
KpnI	GGTACC	1 cut(s)	697
Kzo9I	GATC	4 cut(s)	250, 263, 508, 638
LmnI	GCTCC	5 cut(s)	310, 538, 550, 615, 738
Lsp1109I	GCAGC	3 cut(s)	77, 335, 439
LweI	GCATC	1 cut(s)	802
MaeI	CTAG	1 cut(s)	626
MaeII	ACGT	1 cut(s)	801
MaeIII	GTNAC	3 cut(s)	381, 473, 593
MalI	GATC	4 cut(s)	252, 265, 510, 640
MbiI	CCGCTC	2 cut(s)	219, 733
MboI	GATC	4 cut(s)	250, 263, 508, 638
MboII	GAAGA	3 cut(s)	284, 389, 587
MfeI	CAATTG	2 cut(s)	147, 718
MflI	RGATCY	3 cut(s)	250, 263, 638
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	5 cut(s)	147, 282, 393, 520, 718
MlyI	GAGTC	2 cut(s)	173, 412
MmeI	TCCRAC	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	396
MseI	TTAA	2 cut(s)	315, 411
MslI	CAYNNNNRTG	1 cut(s)	482
MspA1I	CMGCKG	2 cut(s)	430, 830
MspI	CCGG	3 cut(s)	142, 548, 620
MspR9I	CCNGG	2 cut(s)	142, 621
MunI	CAATTG	2 cut(s)	147, 718
Mva1269I	GAATGC	1 cut(s)	489
MvnI	CGCG	4 cut(s)	133, 135, 454, 573
NciI	CCSGG	2 cut(s)	142, 621
NcoI	CCATGG	2 cut(s)	246, 308
NdeII	GATC	4 cut(s)	250, 263, 508, 638
NlaIII	CATG	6 cut(s)	173, 250, 272, 312, 481, 800
NlaIV	GGNNCC	3 cut(s)	252, 540, 695
NmuCI	GTSAC	2 cut(s)	473, 593
PagI	TCATGA	1 cut(s)	169
PauI	GCGCGC	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	655
PctI	GAATGC	1 cut(s)	489
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	4 cut(s)	210, 554, 724, 838
PkrI	GCNGC	6 cut(s)	64, 67, 350, 429, 732, 856
PleI	GAGTC	2 cut(s)	173, 411
PpsI	GAGTC	2 cut(s)	173, 411
PspFI	CCCAGC	2 cut(s)	826, 850
PspN4I	GGNNCC	3 cut(s)	252, 540, 695
PstI	CTGCAG	1 cut(s)	353
PsuI	RGATCY	3 cut(s)	250, 263, 638
PteI	GCGCGC	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	430
RsaI	GTAC	2 cut(s)	695, 804
RsaNI	GTAC	2 cut(s)	694, 803
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	2 cut(s)	315, 411
SatI	GCNGC	6 cut(s)	63, 66, 349, 428, 731, 855
Sau3AI	GATC	4 cut(s)	250, 263, 508, 638
SchI	GAGTC	2 cut(s)	173, 412
ScrFI	CCNGG	2 cut(s)	142, 621
SduI	GDGCHC	1 cut(s)	44
SfaNI	GCATC	1 cut(s)	802
SfcI	CTRYAG	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	482
Sse9I	AATT	5 cut(s)	147, 282, 393, 520, 718
SspI	AATATT	2 cut(s)	292, 532
SspMI	CTAG	1 cut(s)	626
StyD4I	CCNGG	2 cut(s)	140, 619
StyI	CCWWGG	2 cut(s)	246, 308
TaaI	ACNGT	3 cut(s)	387, 473, 747
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	3 cut(s)	186, 524, 861
TasI	AATT	5 cut(s)	147, 282, 393, 520, 718
TauI	GCSGC	3 cut(s)	65, 733, 857
TfiI	GAWTC	4 cut(s)	210, 554, 724, 838
Tru1I	TTAA	2 cut(s)	315, 411
Tru9I	TTAA	2 cut(s)	315, 411
TscAI	CASTG	2 cut(s)	358, 750
TseFI	GTSAC	2 cut(s)	473, 593
TseI	GCWGC	3 cut(s)	65, 348, 427
Tsp45I	GTSAC	2 cut(s)	473, 593
TspDTI	ATGAA	5 cut(s)	170, 285, 542, 582, 786
TspRI	CASTG	2 cut(s)	358, 750
VneI	GTGCAC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	393, 520
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.