Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0015090

Physical Location & Seq

Genomic Coordinates Forward (+)

2241730 .. 2244048

Gene Structure 2319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG032400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTCAAGAAGGTTGTTGGTGGCGCTGATGACCCAACAGTGCACATTAGCAGCGCCACCTCCACCCGCCACTATCTCCCGCCGCCCTGCTATCCTACGCCGCCCACCACCGCCTTCATTCTCCAAACGCTTCATCACAATGACCACCAACAACCAAGACCACCTCGATGACTTGTTCAAGCAAAAACGGATGCTCCGAACTAAGGTCCGGAAGGCCCTGAAGTCAATGGACCCAGTACTCAGATCCCAGGAAGATGATGCGATTCAGAGGATTGTGTTGGAAGCTCCATGGTTTAAGTCTAGTGAGAGATTGTGTGCTTATATAAGCTGTGCTGCTTTGCGTGAAGTTGATACTTCTAAAGTGTTGGGTGAGATTCTAAAGAGTAAAGATGGTGATGTGCAAGTGAGGAAGAAGCTTTATGTGCCGCGTGTGGAGGACAAGAATAGTCACATGAGAATGCTCAACATTTCGAGTGTTGATGATCTGGTTGCGAATTCGATGGATATTTTAGAACCGGCTGCGGTGGATGCTGATGGAAATGAACGCGAAGATGTTTTACAGGCAAGTGATCCAGTTGATTTGTTCCTCTTACCAGGACTAGCATTTGACAGATCTGGGAGACGTTTGGGTCGAGGCGGAGGTTATTATGATACTTTTCTGAGGAACTACCAAGAGCTTGTGAAGGCACGCAATTGGAAGCAACCCCTCCTTGTTGCAATGTCGTATTCTCCACAGATAGTGGATGAAGGAGTTATATCGGTCACCCAACATGATGTTCCAGTTGATGCTCTTGTGTCCTCAGCGGGTGTGATTCCGATCAGCACAGCTGCCATAGACAGGATGAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016882 GO:0018130 GO:0019438 GO:0019752 GO:0030272 GO:0034641 GO:0035999 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0046653 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

5-FTHF_cyc-lig

Protein Analysis

283

Amino Acids

31.71

Weight (kDa)

9.22

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
5-FTHF_cyc-lig	PF01812	62 - 266	1.5e-31	5-formyltetrahydrofolate cyclo-ligase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13050 AT5G13050
fragaria_vesca	FvH4_5g15990
malus_domestica	MD06G1184000.v1.1
prunus_persica	Prupe.5G182700_v2.0.a1
pyrus_communis	pycom06g16300
rosa_chinensis	RchiOBHm_Chr7g0180081
rosa_laevigata	RLG00000005296
rosa_multiflora	Rmu_sc0017616.1_g000003 Rmu_ssc0000119.1_g000029
rosa_roxburghii	Rroxscaffold_3G00273130
rosa_rugosa	Rorug06G0430400
rosa_samantha	Rh7AG030700 Rh7CG032400 Rh7DG031400
rosa_wichuraiana	Rw7G002560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	627
AccII	CGCG	2 cut(s)	427, 546
AccIII	TCCGGA	1 cut(s)	207
AciI	CCGC	9 cut(s)	66, 79, 82, 100, 110, 425, 521, 636, 803
AclWI	GGATC	2 cut(s)	237, 563
AcsI	RAATTY	1 cut(s)	493
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	2 cut(s)	202, 837
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	2 cut(s)	246, 592
AjuI	GAANNNNNNNTTGG	2 cut(s)	759, 791
AluBI	AGCT	5 cut(s)	284, 327, 415, 676, 827
AluI	AGCT	5 cut(s)	284, 327, 415, 676, 827
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	613
Alw44I	GTGCAC	1 cut(s)	40
AlwI	GGATC	2 cut(s)	237, 563
Aor13HI	TCCGGA	1 cut(s)	207
AoxI	GGCC	1 cut(s)	213
ApaLI	GTGCAC	1 cut(s)	40
ApeKI	GCWGC	4 cut(s)	50, 332, 518, 827
ApoI	RAATTY	1 cut(s)	493
AspLEI	GCGC	2 cut(s)	25, 55
AspS9I	GGNCC	3 cut(s)	205, 214, 229
AsuHPI	GGTGA	3 cut(s)	380, 404, 754
AvaII	GGWCC	2 cut(s)	205, 229
BaeGI	GKGCMC	1 cut(s)	44
BarI	GAAGNNNNNNTAC	2 cut(s)	540, 572
Bbv12I	GWGCWC	1 cut(s)	44
BbvCI	CCTCAGC	1 cut(s)	799
BbvI	GCAGC	4 cut(s)	62, 319, 505, 814
BccI	CCATC	3 cut(s)	383, 493, 527
BciT130I	CCWGG	2 cut(s)	248, 594
BcoDI	GTCTC	1 cut(s)	613
BfaI	CTAG	2 cut(s)	300, 599
BfoI	RGCGCY	2 cut(s)	26, 56
BglII	AGATCT	1 cut(s)	611
BisI	GCNGC	7 cut(s)	51, 82, 100, 333, 425, 519, 828
BlsI	GCNGC	7 cut(s)	52, 83, 101, 334, 426, 520, 829
BmcAI	AGTACT	1 cut(s)	237
Bme1390I	CCNGG	2 cut(s)	248, 594
Bme18I	GGWCC	2 cut(s)	205, 229
BmgT120I	GGNCC	3 cut(s)	205, 214, 229
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	2 cut(s)	248, 594
BmrI	ACTGGG	1 cut(s)	227
BmsI	GCATC	4 cut(s)	180, 247, 517, 775
BmuI	ACTGGG	1 cut(s)	227
Bpu10I	CCTNAGC	1 cut(s)	799
BsaBI	GATNNNNATC	1 cut(s)	815
BsaJI	CCNNGG	2 cut(s)	246, 287
BsaWI	WCCGGW	1 cut(s)	207
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 837
Bse118I	RCCGGY	1 cut(s)	514
Bse1I	ACTGG	3 cut(s)	233, 572, 779
Bse3DI	GCAATG	1 cut(s)	723
Bse8I	GATNNNNATC	1 cut(s)	815
BseAI	TCCGGA	1 cut(s)	207
BseBI	CCWGG	2 cut(s)	248, 594
BseDI	CCNNGG	2 cut(s)	246, 287
BseGI	GGATG	4 cut(s)	195, 532, 748, 846
BseJI	GATNNNNATC	1 cut(s)	815
BseLI	CCNNNNNNNGG	2 cut(s)	202, 837
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	3 cut(s)	253, 650, 813
BseNI	ACTGG	3 cut(s)	233, 572, 779
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	4 cut(s)	62, 319, 505, 814
Bsh1236I	CGCG	2 cut(s)	427, 546
BshFI	GGCC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	44
BsiSI	CCGG	2 cut(s)	208, 515
BslI	CCNNNNNNNGG	2 cut(s)	202, 837
BsmAI	GTCTC	1 cut(s)	613
BsmBI	CGTCTC	1 cut(s)	613
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp13I	TCCGGA	1 cut(s)	207
Bsp143I	GATC	5 cut(s)	242, 481, 568, 611, 816
Bsp19I	CCATGG	1 cut(s)	287
BspACI	CCGC	9 cut(s)	66, 79, 82, 100, 110, 425, 521, 636, 803
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	3 cut(s)	252, 651, 812
BspEI	TCCGGA	1 cut(s)	207
BspFNI	CGCG	2 cut(s)	427, 546
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	237, 563
BsrDI	GCAATG	1 cut(s)	723
BsrFI	RCCGGY	1 cut(s)	514
BsrI	ACTGG	3 cut(s)	233, 572, 779
BssAI	RCCGGY	1 cut(s)	514
BssECI	CCNNGG	2 cut(s)	246, 287
BssMI	GATC	5 cut(s)	242, 481, 568, 611, 816
BssT1I	CCWWGG	1 cut(s)	287
Bst2UI	CCWGG	2 cut(s)	248, 594
Bst4CI	ACNGT	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	688
BstDEI	CTNAG	4 cut(s)	201, 239, 659, 799
BstDSI	CCRYGG	1 cut(s)	287
BstEII	GGTNACC	1 cut(s)	760
BstF5I	GGATG	4 cut(s)	195, 532, 748, 846
BstFNI	CGCG	2 cut(s)	427, 546
BstH2I	RGCGCY	2 cut(s)	26, 56
BstHHI	GCGC	2 cut(s)	25, 55
BstKTI	GATC	5 cut(s)	245, 484, 571, 614, 819
BstMAI	GTCTC	1 cut(s)	613
BstMBI	GATC	5 cut(s)	242, 481, 568, 611, 816
BstMWI	GCNNNNNNNGC	2 cut(s)	421, 527
BstNI	CCWGG	2 cut(s)	248, 594
BstPI	GGTNACC	1 cut(s)	760
BstSCI	CCNGG	2 cut(s)	246, 592
BstSLI	GKGCMC	1 cut(s)	44
BstUI	CGCG	2 cut(s)	427, 546
BstV1I	GCAGC	4 cut(s)	62, 319, 505, 814
BstX2I	RGATCY	2 cut(s)	242, 611
BstYI	RGATCY	2 cut(s)	242, 611
BsuRI	GGCC	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	287
BtsCI	GGATG	4 cut(s)	195, 532, 748, 846
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	688
CfoI	GCGC	2 cut(s)	25, 55
Cfr10I	RCCGGY	1 cut(s)	514
Cfr13I	GGNCC	3 cut(s)	205, 214, 229
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	3 cut(s)	288, 451, 770
CviJI	RGCY	7 cut(s)	215, 284, 327, 415, 518, 676, 827
CviKI_1	RGCY	7 cut(s)	215, 284, 327, 415, 518, 676, 827
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	4 cut(s)	201, 239, 659, 799
DpnI	GATC	5 cut(s)	244, 483, 570, 613, 818
DpnII	GATC	5 cut(s)	242, 481, 568, 611, 816
DrdI	GACNNNNNNGTC	1 cut(s)	627
DseDI	GACNNNNNNGTC	1 cut(s)	627
EciI	GGCGGA	1 cut(s)	651
Eco130I	CCWWGG	1 cut(s)	287
Eco47I	GGWCC	2 cut(s)	205, 229
Eco57I	CTGAAG	1 cut(s)	239
Eco91I	GGTNACC	1 cut(s)	760
EcoO109I	RGGNCCY	1 cut(s)	214
EcoO65I	GGTNACC	1 cut(s)	760
EcoRI	GAATTC	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	246, 592
EcoT14I	CCWWGG	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	287
Esp3I	CGTCTC	1 cut(s)	613
FaeI	CATG	3 cut(s)	291, 454, 773
FaiI	YATR	9 cut(s)	289, 321, 323, 420, 452, 648, 755, 771, 833
FatI	CATG	3 cut(s)	287, 450, 769
FauI	CCCGC	3 cut(s)	73, 86, 796
Fnu4HI	GCNGC	7 cut(s)	51, 82, 100, 333, 425, 519, 828
FokI	GGATG	3 cut(s)	202, 539, 755
Fsp4HI	GCNGC	7 cut(s)	51, 82, 100, 333, 425, 519, 828
FspBI	CTAG	2 cut(s)	300, 599
GlaI	GCGC	2 cut(s)	24, 54
GluI	GCNGC	7 cut(s)	51, 82, 100, 333, 425, 519, 828
HaeII	RGCGCY	2 cut(s)	26, 56
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	2 cut(s)	208, 515
HhaI	GCGC	2 cut(s)	25, 55
Hin1II	CATG	3 cut(s)	291, 454, 773
Hin6I	GCGC	2 cut(s)	23, 53
HinP1I	GCGC	2 cut(s)	23, 53
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	3 cut(s)	262, 373, 811
HpaII	CCGG	2 cut(s)	208, 515
HphI	GGTGA	3 cut(s)	380, 404, 754
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	5 cut(s)	197, 242, 267, 660, 816
Hpy188III	TCNNGA	2 cut(s)	6, 208
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	5 cut(s)	3, 123, 205, 676, 740
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	3 cut(s)	42, 400, 716
HpyF10VI	GCNNNNNNNGC	2 cut(s)	421, 527
HpyF3I	CTNAG	4 cut(s)	201, 239, 659, 799
HpySE526I	ACGT	1 cut(s)	622
Hsp92II	CATG	3 cut(s)	291, 454, 773
HspAI	GCGC	2 cut(s)	23, 53
Kpn2I	TCCGGA	1 cut(s)	207
Kzo9I	GATC	5 cut(s)	242, 481, 568, 611, 816
LmnI	GCTCC	2 cut(s)	198, 289
Lsp1109I	GCAGC	4 cut(s)	62, 319, 505, 814
LweI	GCATC	4 cut(s)	180, 247, 517, 775
MaeI	CTAG	2 cut(s)	300, 599
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	2 cut(s)	446, 760
MalI	GATC	5 cut(s)	244, 483, 570, 613, 818
MboI	GATC	5 cut(s)	242, 481, 568, 611, 816
MboII	GAAGA	3 cut(s)	263, 421, 560
MfeI	CAATTG	1 cut(s)	691
MflI	RGATCY	2 cut(s)	242, 611
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	2 cut(s)	493, 691
MmeI	TCCRAC	1 cut(s)	258
MroI	TCCGGA	1 cut(s)	207
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	3 cut(s)	137, 165, 455
MspA1I	CMGCKG	2 cut(s)	803, 827
MspI	CCGG	2 cut(s)	208, 515
MspR9I	CCNGG	2 cut(s)	248, 594
MunI	CAATTG	1 cut(s)	691
Mva1269I	GAATGC	1 cut(s)	462
MvaI	CCWGG	2 cut(s)	248, 594
MvnI	CGCG	2 cut(s)	427, 546
MwoI	GCNNNNNNNGC	2 cut(s)	421, 527
NcoI	CCATGG	1 cut(s)	287
NdeII	GATC	5 cut(s)	242, 481, 568, 611, 816
NlaIII	CATG	3 cut(s)	291, 454, 773
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	2 cut(s)	446, 760
PcsI	WCGNNNNNNNCGW	2 cut(s)	193, 628
PctI	GAATGC	1 cut(s)	462
PfeI	GAWTC	3 cut(s)	262, 373, 811
PkrI	GCNGC	7 cut(s)	52, 83, 101, 334, 426, 520, 829
Psp6I	CCWGG	2 cut(s)	246, 592
PspEI	GGTNACC	1 cut(s)	760
PspGI	CCWGG	2 cut(s)	246, 592
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	3 cut(s)	205, 214, 229
PsuI	RGATCY	2 cut(s)	242, 611
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
RseI	CAYNNNNRTG	3 cut(s)	137, 165, 455
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	7 cut(s)	51, 82, 100, 333, 425, 519, 828
Sau3AI	GATC	5 cut(s)	242, 481, 568, 611, 816
Sau96I	GGNCC	3 cut(s)	205, 214, 229
ScaI	AGTACT	1 cut(s)	237
ScrFI	CCNGG	2 cut(s)	248, 594
SduI	GDGCHC	1 cut(s)	44
SfaNI	GCATC	4 cut(s)	180, 247, 517, 775
SinI	GGWCC	2 cut(s)	205, 229
SmiMI	CAYNNNNRTG	3 cut(s)	137, 165, 455
Sse9I	AATT	2 cut(s)	493, 691
SsiI	CCGC	9 cut(s)	66, 79, 82, 100, 110, 425, 521, 636, 803
SspMI	CTAG	2 cut(s)	300, 599
StyD4I	CCNGG	2 cut(s)	246, 592
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	4 cut(s)	165, 470, 497, 631
TaqII	GACCGA	1 cut(s)	748
TasI	AATT	2 cut(s)	493, 691
TatI	WGTACW	1 cut(s)	235
TauI	GCSGC	3 cut(s)	84, 102, 427
TfiI	GAWTC	3 cut(s)	262, 373, 811
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	44
TseFI	GTSAC	2 cut(s)	446, 760
TseI	GCWGC	4 cut(s)	50, 332, 518, 827
Tsp45I	GTSAC	2 cut(s)	446, 760
TspDTI	ATGAA	4 cut(s)	105, 121, 555, 759
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	1 cut(s)	44
VneI	GTGCAC	1 cut(s)	40
VpaK11BI	GGWCC	2 cut(s)	205, 229
XapI	RAATTY	1 cut(s)	493
XspI	CTAG	2 cut(s)	300, 599
ZrmI	AGTACT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.