Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0015090

Physical Location & Seq

Genomic Coordinates Reverse (-)

56584279 .. 56585745

Gene Structure 1467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0430400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGCGGGAAAGTACATCATAGGATCTCTCGTGGCAACCTTTGGAGTTGCATATGTTTGTGACACCATTATTTCTGACAGAAAGATATTTGGAGGTACCACTCCCGGAACTGTTTCAAACAAGGGATGGTGGGAAGAAACTGACAAGAAATTCCAGGCCTGGCCTCGCACTGCAGGACCTCCCGTTGTCATGAACCCCATCAGTCGGCAGAATTTCATTGTCAAATCCCAGTCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006575 GO:0006725 GO:0006730 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016882 GO:0018130 GO:0019438 GO:0019752 GO:0030272 GO:0034641 GO:0035999 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0046653 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

5-FTHF_cyc-lig

Protein Analysis

79

Amino Acids

8.68

Weight (kDa)

9.3

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1138	PF06592	4 - 75	3.9e-44	Protein of unknown function (DUF1138)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13050 AT5G13050
fragaria_vesca	FvH4_5g15990
malus_domestica	MD06G1184000.v1.1
prunus_persica	Prupe.5G182700_v2.0.a1
pyrus_communis	pycom06g16300
rosa_chinensis	RchiOBHm_Chr7g0180081
rosa_laevigata	RLG00000005296
rosa_multiflora	Rmu_sc0017616.1_g000003 Rmu_ssc0000119.1_g000029
rosa_roxburghii	Rroxscaffold_3G00273130
rosa_rugosa	Rorug06G0430400
rosa_samantha	Rh7AG030700 Rh7CG032400 Rh7DG031400
rosa_wichuraiana	Rw7G002560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	95
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	31
AcsI	RAATTY	2 cut(s)	149, 211
AfaI	GTAC	2 cut(s)	14, 97
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	117
AjnI	CCWGG	2 cut(s)	153, 158
AlwI	GGATC	1 cut(s)	31
AoxI	GGCC	2 cut(s)	156, 161
ApoI	RAATTY	2 cut(s)	149, 211
Asp700I	GAANNNNTTC	1 cut(s)	112
Asp718I	GGTACC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	176
AsuC2I	CCSGG	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	95
BauI	CACGAG	1 cut(s)	29
BccI	CCATC	2 cut(s)	120, 206
BciT130I	CCWGG	2 cut(s)	155, 160
BcnI	CCSGG	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	171
Bme1390I	CCNGG	3 cut(s)	105, 155, 160
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	3 cut(s)	105, 155, 160
BmrI	ACTGGG	1 cut(s)	223
BmuI	ACTGGG	1 cut(s)	223
BpuMI	CCSGG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse1I	ACTGG	1 cut(s)	229
BseBI	CCWGG	2 cut(s)	155, 160
BseGI	GGATG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	229
BshFI	GGCC	2 cut(s)	158, 163
BshNI	GGYRCC	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	204
BsnI	GGCC	2 cut(s)	158, 163
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	158, 163
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	175
BspPI	GGATC	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	229
BssMI	GATC	1 cut(s)	23
BssSI	CACGAG	1 cut(s)	29
Bst2BI	CACGAG	1 cut(s)	29
Bst2UI	CCWGG	2 cut(s)	155, 160
Bst4CI	ACNGT	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	131
BstKTI	GATC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	23
BstNI	CCWGG	2 cut(s)	155, 160
BstSCI	CCNGG	3 cut(s)	103, 153, 158
BstSFI	CTRYAG	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	158, 163
BtsCI	GGATG	1 cut(s)	131
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
CciI	TCATGA	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	2 cut(s)	13, 96
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	2 cut(s)	158, 163
CviKI_1	RGCY	2 cut(s)	158, 163
CviQI	GTAC	2 cut(s)	13, 96
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
Eco147I	AGGCCT	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRII	CCWGG	2 cut(s)	153, 158
FaeI	CATG	1 cut(s)	193
FaiI	YATR	4 cut(s)	20, 52, 54, 191
FatI	CATG	1 cut(s)	189
FauNDI	CATATG	1 cut(s)	52
FokI	GGATG	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	158, 163
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	1 cut(s)	193
HpaII	CCGG	1 cut(s)	105
Hpy188I	TCNGA	2 cut(s)	76, 235
Hpy188III	TCNNGA	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	50, 173
Hsp92II	CATG	1 cut(s)	193
KpnI	GGTACC	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	23
LpnPI	CCDG	6 cut(s)	118, 140, 145, 159, 167, 172
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MboII	GAAGA	1 cut(s)	146
MflI	RGATCY	1 cut(s)	23
MluCI	AATT	2 cut(s)	149, 211
MnlI	CCTC	3 cut(s)	86, 174, 189
MroXI	GAANNNNTTC	1 cut(s)	112
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	3 cut(s)	105, 155, 160
MvaI	CCWGG	2 cut(s)	155, 160
NciI	CCSGG	1 cut(s)	105
NdeI	CATATG	1 cut(s)	52
NdeII	GATC	1 cut(s)	23
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	59
PagI	TCATGA	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	158
PdmI	GAANNNNTTC	1 cut(s)	112
PfoI	TCCNGGA	1 cut(s)	103
PpuMI	RGGWCCY	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	176
Psp6I	CCWGG	2 cut(s)	153, 158
PspGI	CCWGG	2 cut(s)	153, 158
PspN4I	GGNNCC	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	176
PspPPI	RGGWCCY	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	2 cut(s)	14, 97
RsaNI	GTAC	2 cut(s)	13, 96
Sau3AI	GATC	1 cut(s)	23
Sau96I	GGNCC	1 cut(s)	176
ScrFI	CCNGG	3 cut(s)	105, 155, 160
SetI	ASST	3 cut(s)	41, 97, 181
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	176
Sse9I	AATT	2 cut(s)	149, 211
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	1 cut(s)	5
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	3 cut(s)	103, 153, 158
TaaI	ACNGT	1 cut(s)	112
TasI	AATT	2 cut(s)	149, 211
TatI	WGTACW	1 cut(s)	12
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	205, 206
TspRI	CASTG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	2 cut(s)	149, 211
XmnI	GAANNNNTTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.