AT5G13140

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015015
Physical Location & Seq
Reverse (-)
4170560 .. 4171954
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13140.1

Sequence Viewer

Length: 804 bp
ATGTATCTTCCTCTCCTCTATCTTCTGTTTCTGGCTTCTTGCTTGACACATCAAGCTTTAGGCCGTGGTCGTGGCCGGCCATCACCGGAAGGAAGCTTGGATCCTTCTTCTCGCATCACCGTAGTCGGAGTTGTCTACTGTGACACGTGTTCTATCAACACTTTCTCAAGACAAAGCTATTTCTTACAAGGTGTGGAAGTTCATGTGACATGTAGATTCAAAGCAAGTTCACCAAAAACAGCAGAGGAAGTGAACATATCAGTAAACAGAACAACAAACAGAAGTGGCGTGTACAAGCTCGAGATCCCTCACGTAGATGGCATCGATTGTGTCGACGGAATCGCTATATCATCACAATGCAGTGCCAAGATACTCAAAACCTCCTCTGACGACAACGGAGGCTGCAGCATCCCTGTTTTCCAAACTGCAACCAACGAAGTATCCATCAAATCAAAGCAAGATCGTGTCTGTATCTACAGCTTAAGCGCACTAAGCTATAAACCTCCTCACAAAAACACATCATTGTGTGGAAACGGAGGGAAGAAACATCACCGAAAGGACGAGAAGGTGGAGAAGAAGTTTAGAGATTCGAAATTCTTCTGGCCTTATTTGGCACCGTATTGGTTCCCTTGGCCATATCCGGATCTACCTCCATTGCCAACTCTACCGCCTTTTCCGTCTTTCCCTTTCCCTTCTTTACCTTTCGGAAACCCGAATCTGGCATTGCCGGCTTTCGATTGGAAAAATCCGGTCACTTGGATACCTTATCTTCCACGTTTTCCTCCAGGAGATCATAATCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

267

Amino Acids

29.81

Weight (kDa)

9.0

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 41 - 139 2.7e-16 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13140
fragaria_vesca FvH4_4g23200
malus_domestica MD13G1123800.v1.1 MD16G1124400.v1.1
prunus_persica Prupe.1G221100_v2.0.a1
pyrus_communis pycom13g10830
rosa_chinensis RchiOBHm_Chr4g0429561
rosa_laevigata RLG00000007061
rosa_multiflora Rmu_sc0013305.1_g000002
rosa_roxburghii Rroxscaffold_5G00371260
rosa_rugosa Rorug04G0237100
rosa_samantha Rh4AG292900 Rh4BG298600 Rh4CG314100 Rh4DG295600
rosa_wichuraiana Rw4G025350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 613
AccI GTMKAC 2 cut(s) 135, 333
AccIII TCCGGA 1 cut(s) 640
AciI CCGC 1 cut(s) 668
AclWI GGATC 4 cut(s) 95, 108, 298, 651
AcoI YGGCCR 3 cut(s) 73, 77, 632
AcsI RAATTY 1 cut(s) 593
AcvI CACGTG 1 cut(s) 147
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 718
AflII CTTAAG 1 cut(s) 481
AflIII ACRYGT 3 cut(s) 144, 146, 209
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 1 cut(s) 784
AluBI AGCT 6 cut(s) 56, 96, 177, 298, 480, 495
AluI AGCT 6 cut(s) 56, 96, 177, 298, 480, 495
AlwI GGATC 4 cut(s) 95, 108, 298, 651
Ama87I CYCGRG 1 cut(s) 299
Aor13HI TCCGGA 1 cut(s) 640
AoxI GGCC 5 cut(s) 61, 73, 77, 602, 632
ApeKI GCWGC 2 cut(s) 402, 405
ApoI RAATTY 1 cut(s) 593
Asp700I GAANNNNTTC 1 cut(s) 596
AspLEI GCGC 1 cut(s) 488
AsuHPI GGTGA 4 cut(s) 75, 109, 222, 542
AsuII TTCGAA 1 cut(s) 590
AvaI CYCGRG 1 cut(s) 299
BalI TGGCCA 1 cut(s) 634
BamHI GGATCC 1 cut(s) 100
BanI GGYRCC 1 cut(s) 613
BbrPI CACGTG 1 cut(s) 147
BbvI GCAGC 2 cut(s) 389, 417
BccI CCATC 3 cut(s) 88, 311, 452
BceAI ACGGC 1 cut(s) 48
BciT130I CCWGG 1 cut(s) 786
BciVI GTATCC 2 cut(s) 451, 753
BfmI CTRYAG 2 cut(s) 403, 475
BfrI CTTAAG 1 cut(s) 481
BfuI GTATCC 2 cut(s) 451, 753
BisI GCNGC 2 cut(s) 403, 406
BlsI GCNGC 2 cut(s) 404, 407
Bme1390I CCNGG 1 cut(s) 786
BmeT110I CYCGRG 1 cut(s) 299
BmiI GGNNCC 3 cut(s) 102, 615, 626
BmrFI CCNGG 1 cut(s) 786
BmsI GCATC 3 cut(s) 123, 330, 417
BpmI CTGGAG 1 cut(s) 768
Bpu14I TTCGAA 1 cut(s) 590
BpuEI CTTGAG 1 cut(s) 151
Bsa29I ATCGAT 1 cut(s) 324
BsaAI YACGTR 2 cut(s) 147, 313
BsaBI GATNNNNATC 1 cut(s) 795
BsaJI CCNNGG 2 cut(s) 64, 629
BsaWI WCCGGW 3 cut(s) 85, 640, 748
BsaXI ACNNNNNCTCC 2 cut(s) 563, 593
Bsc4I CCNNNNNNNGG 1 cut(s) 718
Bse118I RCCGGY 2 cut(s) 75, 727
Bse3DI GCAATG 2 cut(s) 653, 722
Bse8I GATNNNNATC 1 cut(s) 795
BseAI TCCGGA 1 cut(s) 640
BseBI CCWGG 1 cut(s) 786
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 64, 629
BseGI GGATG 1 cut(s) 408
BseJI GATNNNNATC 1 cut(s) 795
BseLI CCNNNNNNNGG 1 cut(s) 718
BseMI GCAATG 2 cut(s) 653, 722
BseRI GAGGAG 3 cut(s) 5, 373, 495
BseXI GCAGC 2 cut(s) 389, 417
BshFI GGCC 5 cut(s) 63, 75, 79, 604, 634
BshNI GGYRCC 1 cut(s) 613
BshVI ATCGAT 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 5 cut(s) 76, 86, 641, 728, 749
BslI CCNNNNNNNGG 1 cut(s) 718
BsnI GGCC 5 cut(s) 63, 75, 79, 604, 634
BsoBI CYCGRG 1 cut(s) 299
Bsp119I TTCGAA 1 cut(s) 590
Bsp13I TCCGGA 1 cut(s) 640
Bsp1407I TGTACA 1 cut(s) 291
Bsp143I GATC 5 cut(s) 100, 303, 460, 643, 790
BspACI CCGC 1 cut(s) 668
BspANI GGCC 5 cut(s) 63, 75, 79, 604, 634
BspDI ATCGAT 1 cut(s) 324
BspEI TCCGGA 1 cut(s) 640
BspLI GGNNCC 3 cut(s) 102, 615, 626
BspMAI CTGCAG 1 cut(s) 407
BspPI GGATC 4 cut(s) 95, 108, 298, 651
BspT104I TTCGAA 1 cut(s) 590
BspT107I GGYRCC 1 cut(s) 613
BspTI CTTAAG 1 cut(s) 481
BsrDI GCAATG 2 cut(s) 653, 722
BsrFI RCCGGY 2 cut(s) 75, 727
BsrGI TGTACA 1 cut(s) 291
BssAI RCCGGY 2 cut(s) 75, 727
BssECI CCNNGG 2 cut(s) 64, 629
BssMI GATC 5 cut(s) 100, 303, 460, 643, 790
BssT1I CCWWGG 1 cut(s) 629
Bst2UI CCWGG 1 cut(s) 786
Bst4CI ACNGT 3 cut(s) 121, 140, 618
BstAFI CTTAAG 1 cut(s) 481
BstAUI TGTACA 1 cut(s) 291
BstBAI YACGTR 2 cut(s) 147, 313
BstBI TTCGAA 1 cut(s) 590
BstC8I GCNNGC 2 cut(s) 77, 729
BstDEI CTNAG 2 cut(s) 491, 801
BstDSI CCRYGG 1 cut(s) 64
BstF5I GGATG 1 cut(s) 408
BstHHI GCGC 1 cut(s) 488
BstKTI GATC 5 cut(s) 103, 306, 463, 646, 793
BstMBI GATC 5 cut(s) 100, 303, 460, 643, 790
BstMWI GCNNNNNNNGC 2 cut(s) 492, 728
BstNI CCWGG 1 cut(s) 786
BstNSI RCATGY 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 784
BstSFI CTRYAG 2 cut(s) 403, 475
BstV1I GCAGC 2 cut(s) 389, 417
BstX2I RGATCY 3 cut(s) 100, 303, 643
BstYI RGATCY 3 cut(s) 100, 303, 643
Bsu15I ATCGAT 1 cut(s) 324
BsuI GTATCC 2 cut(s) 451, 753
BsuRI GGCC 5 cut(s) 63, 75, 79, 604, 634
BsuTUI ATCGAT 1 cut(s) 324
BtgI CCRYGG 1 cut(s) 64
BtsCI GGATG 1 cut(s) 408
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 367
Cac8I GCNNGC 2 cut(s) 77, 729
CfoI GCGC 1 cut(s) 488
Cfr10I RCCGGY 2 cut(s) 75, 727
ClaI ATCGAT 1 cut(s) 324
Csp6I GTAC 1 cut(s) 292
CviAII CATG 2 cut(s) 203, 210
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 2 cut(s) 491, 801
DpnI GATC 5 cut(s) 102, 305, 462, 645, 792
DpnII GATC 5 cut(s) 100, 303, 460, 643, 790
EaeI YGGCCR 3 cut(s) 73, 77, 632
Eco130I CCWWGG 1 cut(s) 629
Eco72I CACGTG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 784
EcoT14I CCWWGG 1 cut(s) 629
ErhI CCWWGG 1 cut(s) 629
FaeI CATG 2 cut(s) 206, 213
FaiI YATR 7 cut(s) 204, 211, 257, 347, 498, 637, 795
FatI CATG 2 cut(s) 202, 209
FblI GTMKAC 2 cut(s) 135, 333
Fnu4HI GCNGC 2 cut(s) 403, 406
FokI GGATG 1 cut(s) 395
FseI GGCCGGCC 1 cut(s) 79
Fsp4HI GCNGC 2 cut(s) 403, 406
GlaI GCGC 1 cut(s) 487
GluI GCNGC 2 cut(s) 403, 406
GsuI CTGGAG 1 cut(s) 768
HaeIII GGCC 5 cut(s) 63, 75, 79, 604, 634
HapII CCGG 5 cut(s) 76, 86, 641, 728, 749
HhaI GCGC 1 cut(s) 488
Hin1II CATG 2 cut(s) 206, 213
Hin6I GCGC 1 cut(s) 486
HinP1I GCGC 1 cut(s) 486
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 2 cut(s) 54, 94
HinfI GANTC 4 cut(s) 216, 339, 587, 715
HpaII CCGG 5 cut(s) 76, 86, 641, 728, 749
HphI GGTGA 4 cut(s) 75, 109, 222, 542
Hpy166II GTNNAC 6 cut(s) 136, 230, 253, 265, 292, 334
Hpy188I TCNGA 3 cut(s) 128, 388, 707
Hpy188III TCNNGA 3 cut(s) 168, 301, 641
Hpy8I GTNNAC 6 cut(s) 136, 230, 253, 265, 292, 334
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 4 cut(s) 83, 114, 559, 702
HpyCH4III ACNGT 3 cut(s) 121, 140, 618
HpyCH4IV ACGT 3 cut(s) 146, 312, 775
HpyCH4V TGCA 3 cut(s) 360, 405, 428
HpyF10VI GCNNNNNNNGC 2 cut(s) 492, 728
HpyF3I CTNAG 2 cut(s) 491, 801
HpySE526I ACGT 3 cut(s) 146, 312, 775
Hsp92II CATG 2 cut(s) 206, 213
HspAI GCGC 1 cut(s) 486
Kpn2I TCCGGA 1 cut(s) 640
KroI GCCGGC 2 cut(s) 75, 727
KroNI GCCGGC 2 cut(s) 77, 729
Kzo9I GATC 5 cut(s) 100, 303, 460, 643, 790
Lsp1109I GCAGC 2 cut(s) 389, 417
LweI GCATC 3 cut(s) 123, 330, 417
MaeII ACGT 3 cut(s) 146, 312, 775
MaeIII GTNAC 3 cut(s) 140, 205, 751
MalI GATC 5 cut(s) 102, 305, 462, 645, 792
MboI GATC 5 cut(s) 100, 303, 460, 643, 790
MboII GAAGA 6 cut(s) 14, 99, 553, 586, 589, 761
MflI RGATCY 3 cut(s) 100, 303, 643
MlsI TGGCCA 1 cut(s) 634
MluCI AATT 1 cut(s) 593
MluNI TGGCCA 1 cut(s) 634
MmeI TCCRAC 1 cut(s) 106
Mox20I TGGCCA 1 cut(s) 634
MroI TCCGGA 1 cut(s) 640
MroNI GCCGGC 2 cut(s) 75, 727
MroXI GAANNNNTTC 1 cut(s) 596
MscI TGGCCA 1 cut(s) 634
MseI TTAA 1 cut(s) 482
MslI CAYNNNNRTG 3 cut(s) 315, 355, 523
Msp20I TGGCCA 1 cut(s) 634
MspCI CTTAAG 1 cut(s) 481
MspI CCGG 5 cut(s) 76, 86, 641, 728, 749
MspR9I CCNGG 1 cut(s) 786
MvaI CCWGG 1 cut(s) 786
MwoI GCNNNNNNNGC 2 cut(s) 492, 728
NaeI GCCGGC 2 cut(s) 77, 729
NdeII GATC 5 cut(s) 100, 303, 460, 643, 790
NgoMIV GCCGGC 2 cut(s) 75, 727
NlaIII CATG 2 cut(s) 206, 213
NlaIV GGNNCC 3 cut(s) 102, 615, 626
NmuCI GTSAC 3 cut(s) 140, 205, 751
NspI RCATGY 1 cut(s) 213
NspV TTCGAA 1 cut(s) 590
PaeR7I CTCGAG 1 cut(s) 299
PciI ACATGT 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PdiI GCCGGC 2 cut(s) 77, 729
PdmI GAANNNNTTC 1 cut(s) 596
PfeI GAWTC 4 cut(s) 216, 339, 587, 715
PfoI TCCNGGA 1 cut(s) 784
PkrI GCNGC 2 cut(s) 404, 407
PmaCI CACGTG 1 cut(s) 147
PmlI CACGTG 1 cut(s) 147
Ppu21I YACGTR 2 cut(s) 147, 313
PscI ACATGT 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 784
PspCI CACGTG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 784
PspN4I GGNNCC 3 cut(s) 102, 615, 626
PstI CTGCAG 1 cut(s) 407
PsuI RGATCY 3 cut(s) 100, 303, 643
RigI GGCCGGCC 1 cut(s) 79
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 3 cut(s) 315, 355, 523
SalI GTCGAC 1 cut(s) 332
SaqAI TTAA 1 cut(s) 482
SatI GCNGC 2 cut(s) 403, 406
Sau3AI GATC 5 cut(s) 100, 303, 460, 643, 790
ScrFI CCNGG 1 cut(s) 786
SfaNI GCATC 3 cut(s) 123, 330, 417
SfcI CTRYAG 2 cut(s) 403, 475
Sfr274I CTCGAG 1 cut(s) 299
SfuI TTCGAA 1 cut(s) 590
SlaI CTCGAG 1 cut(s) 299
SmiMI CAYNNNNRTG 3 cut(s) 315, 355, 523
SmlI CTYRAG 3 cut(s) 166, 299, 481
SmoI CTYRAG 3 cut(s) 166, 299, 481
Sse9I AATT 1 cut(s) 593
SsiI CCGC 1 cut(s) 668
StyD4I CCNGG 1 cut(s) 784
StyI CCWWGG 1 cut(s) 629
TaaI ACNGT 3 cut(s) 121, 140, 618
TaiI ACGT 3 cut(s) 149, 315, 778
TaqI TCGA 5 cut(s) 300, 324, 333, 590, 735
TasI AATT 1 cut(s) 593
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 4 cut(s) 216, 339, 587, 715
Tru1I TTAA 1 cut(s) 482
Tru9I TTAA 1 cut(s) 482
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 3 cut(s) 140, 205, 751
TseI GCWGC 2 cut(s) 402, 405
Tsp45I GTSAC 3 cut(s) 140, 205, 751
TspDTI ATGAA 1 cut(s) 191
TspGWI ACGGA 4 cut(s) 351, 411, 549, 666
TspRI CASTG 1 cut(s) 367
Vha464I CTTAAG 1 cut(s) 481
XapI RAATTY 1 cut(s) 593
XceI RCATGY 1 cut(s) 213
XhoI CTCGAG 1 cut(s) 299
XmiI GTMKAC 2 cut(s) 135, 333
XmnI GAANNNNTTC 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.