Rmu_sc0013305.1_g000002

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013305.1
OG0015015
Physical Location & Seq
Reverse (-)
3500 .. 4599
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013305.1_g000002.1.cds

Sequence Viewer

Length: 906 bp
atggatgctattatttttcaccttcttcttcttcttacatgtttcctcacccacccaactgctccggtagctcataaagcaacaaccccaaccgctcggatcaccgtcgtgggagcggtttattgtgatacttgttcaagcaacacattctcaagaagcagctactttctcccaggtgtggatgttgtgatacaatgcaagttcagagggaactcggccaaagcctcagaggatatgaatttctcagtcaacaaaaccacaaacaagtatggagtttacaaactggaaataccttctgttgatggggtcaactgcttaagtggtgtgtcaattaagtcaatgtgccaagcaagtttgatatggagctcatccaaaagttgcaatgttcctggtttaagaaccacagcagatgagatttcagtcaagtcaaaacaagataacctctgtatttacagcatgaatgccttgagttacaggccaccaaagaagaatcttaccctttgtggaaagaggaaggaagaggaattggcaagttctttcaattcctccaagttttttctcccatactttccaccattctatcaattcccatggcctcctttgcctcaattccctttccctcctcttccacctctaccatccttgcccccatttccatcttttccattccctccatctttgcctttcccatttccaagtctacctccttttccatccccaaatcctcttgccccaaacactccacctccatttaatttaggagacccaagaacttggataccttatatcccttctgtctttcctccacctcctcccccaccaggattcaatctcagagaccccagaacctggataccatatattcctccatcccctcccaataggcctcaaaaccagaacccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

301

Amino Acids

33.33

Weight (kDa)

9.2

Isoelectric Point (pI)

61.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13140
fragaria_vesca FvH4_4g23200
malus_domestica MD13G1123800.v1.1 MD16G1124400.v1.1
prunus_persica Prupe.1G221100_v2.0.a1
pyrus_communis pycom13g10830
rosa_chinensis RchiOBHm_Chr4g0429561
rosa_laevigata RLG00000007061
rosa_multiflora Rmu_sc0013305.1_g000002
rosa_roxburghii Rroxscaffold_5G00371260
rosa_rugosa Rorug04G0237100
rosa_samantha Rh4AG292900 Rh4BG298600 Rh4CG314100 Rh4DG295600
rosa_wichuraiana Rw4G025350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 849
AccBSI CCGCTC 2 cut(s) 95, 116
AccI GTMKAC 1 cut(s) 700
AciI CCGC 2 cut(s) 93, 116
AclWI GGATC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 216
AcsI RAATTY 1 cut(s) 238
AfiI CCNNNNNNNGG 3 cut(s) 178, 821, 849
AflII CTTAAG 1 cut(s) 316
AflIII ACRYGT 1 cut(s) 38
AgsI TTSAA 3 cut(s) 138, 541, 829
AjnI CCWGG 4 cut(s) 172, 388, 820, 848
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 3 cut(s) 71, 162, 366
AluI AGCT 3 cut(s) 71, 162, 366
Alw21I GWGCWC 1 cut(s) 368
Alw26I GTCTC 2 cut(s) 756, 831
AlwI GGATC 1 cut(s) 107
AlwNI CAGNNNCTG 1 cut(s) 849
AoxI GGCC 4 cut(s) 216, 476, 593, 884
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 1 cut(s) 238
AsuHPI GGTGA 3 cut(s) 11, 40, 94
BanII GRGCYC 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 368
BbvI GCAGC 1 cut(s) 171
BccI CCATC 6 cut(s) 296, 646, 664, 682, 721, 877
BciT130I CCWGG 4 cut(s) 174, 390, 822, 850
BciVI GTATCC 2 cut(s) 771, 846
BcoDI GTCTC 2 cut(s) 756, 831
BfrI CTTAAG 1 cut(s) 316
BfuI GTATCC 2 cut(s) 771, 846
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 4 cut(s) 174, 390, 822, 850
BmrFI CCNGG 4 cut(s) 174, 390, 822, 850
BpuEI CTTGAG 2 cut(s) 136, 487
BsaI GGTCTC 2 cut(s) 756, 831
BsaJI CCNNGG 2 cut(s) 172, 590
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 730, 760
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 821, 849
Bse1I ACTGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 388
BseBI CCWGG 4 cut(s) 174, 390, 822, 850
BseDI CCNNGG 2 cut(s) 172, 590
BseGI GGATG 6 cut(s) 10, 187, 368, 638, 713, 869
BseLI CCNNNNNNNGG 3 cut(s) 178, 821, 849
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 3 cut(s) 240, 258, 847
BseNI ACTGG 1 cut(s) 288
BseRI GAGGAG 2 cut(s) 612, 801
BseXI GCAGC 1 cut(s) 171
BshFI GGCC 4 cut(s) 218, 478, 595, 886
BsiHKAI GWGCWC 1 cut(s) 368
BsiSI CCGG 1 cut(s) 65
BslI CCNNNNNNNGG 3 cut(s) 178, 821, 849
BsmAI GTCTC 2 cut(s) 756, 831
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 4 cut(s) 218, 478, 595, 886
Bso31I GGTCTC 2 cut(s) 756, 831
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 1 cut(s) 99
Bsp19I CCATGG 1 cut(s) 590
BspACI CCGC 2 cut(s) 93, 116
BspANI GGCC 4 cut(s) 218, 478, 595, 886
BspCNI CTCAG 3 cut(s) 239, 257, 846
BspPI GGATC 1 cut(s) 107
BspTI CTTAAG 1 cut(s) 316
BspTNI GGTCTC 2 cut(s) 756, 831
BsrBI CCGCTC 2 cut(s) 95, 116
BsrDI GCAATG 1 cut(s) 388
BsrI ACTGG 1 cut(s) 288
BssECI CCNNGG 2 cut(s) 172, 590
BssMI GATC 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 590
Bst2UI CCWGG 4 cut(s) 174, 390, 822, 850
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 513, 630
BstAFI CTTAAG 1 cut(s) 316
BstDEI CTNAG 3 cut(s) 226, 244, 833
BstDSI CCRYGG 1 cut(s) 590
BstF5I GGATG 6 cut(s) 10, 187, 368, 638, 713, 869
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 2 cut(s) 756, 831
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 3 cut(s) 68, 77, 601
BstNI CCWGG 4 cut(s) 174, 390, 822, 850
BstNSI RCATGY 1 cut(s) 42
BstSCI CCNGG 4 cut(s) 172, 388, 820, 848
BstV1I GCAGC 1 cut(s) 171
BstXI CCANNNNNNTGG 1 cut(s) 774
BsuI GTATCC 2 cut(s) 771, 846
BsuRI GGCC 4 cut(s) 218, 478, 595, 886
BtgI CCRYGG 1 cut(s) 590
BtsCI GGATG 6 cut(s) 10, 187, 368, 638, 713, 869
CaiI CAGNNNCTG 1 cut(s) 849
CviAII CATG 3 cut(s) 39, 457, 591
CviJI RGCY 8 cut(s) 71, 162, 218, 224, 366, 478, 595, 886
CviKI_1 RGCY 8 cut(s) 71, 162, 218, 224, 366, 478, 595, 886
DdeI CTNAG 3 cut(s) 226, 244, 833
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 216
Eam1104I CTCTTC 2 cut(s) 513, 630
EarI CTCTTC 2 cut(s) 513, 630
Ecl136II GAGCTC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 590
Eco147I AGGCCT 1 cut(s) 886
Eco24I GRGCYC 1 cut(s) 368
Eco31I GGTCTC 2 cut(s) 756, 831
Eco53kI GAGCTC 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 366
EcoRII CCWGG 4 cut(s) 172, 388, 820, 848
EcoT14I CCWWGG 1 cut(s) 590
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 590
FaeI CATG 3 cut(s) 42, 460, 594
FatI CATG 3 cut(s) 38, 456, 590
FblI GTMKAC 1 cut(s) 700
Fnu4HI GCNGC 1 cut(s) 160
FokI GGATG 6 cut(s) 17, 194, 355, 625, 700, 856
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 1 cut(s) 160
GluI GCNGC 1 cut(s) 160
HaeIII GGCC 4 cut(s) 218, 478, 595, 886
HapII CCGG 1 cut(s) 65
Hin1II CATG 3 cut(s) 42, 460, 594
HincII GTYRAC 2 cut(s) 250, 310
HindII GTYRAC 2 cut(s) 250, 310
HinfI GANTC 2 cut(s) 490, 825
HpaII CCGG 1 cut(s) 65
HphI GGTGA 3 cut(s) 11, 40, 94
Hpy166II GTNNAC 4 cut(s) 250, 277, 310, 701
Hpy188I TCNGA 4 cut(s) 99, 206, 229, 836
Hpy188III TCNNGA 1 cut(s) 153
Hpy8I GTNNAC 4 cut(s) 250, 277, 310, 701
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 4 cut(s) 32, 303, 508, 801
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 2 cut(s) 198, 381
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 77, 601
HpyF3I CTNAG 3 cut(s) 226, 244, 833
Hsp92II CATG 3 cut(s) 42, 460, 594
Kzo9I GATC 1 cut(s) 99
LmnI GCTCC 3 cut(s) 67, 113, 363
Lsp1109I GCAGC 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 470
MalI GATC 1 cut(s) 101
MbiI CCGCTC 2 cut(s) 95, 116
MboI GATC 1 cut(s) 99
MboII GAAGA 6 cut(s) 17, 20, 23, 499, 530, 617
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 7 cut(s) 238, 330, 524, 541, 584, 608, 754
MseI TTAA 4 cut(s) 317, 333, 395, 753
MslI CAYNNNNRTG 1 cut(s) 107
MspCI CTTAAG 1 cut(s) 316
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 4 cut(s) 174, 390, 822, 850
Mva1269I GAATGC 1 cut(s) 466
MvaI CCWGG 4 cut(s) 174, 390, 822, 850
MwoI GCNNNNNNNGC 3 cut(s) 68, 77, 601
NcoI CCATGG 1 cut(s) 590
NdeII GATC 1 cut(s) 99
NlaIII CATG 3 cut(s) 42, 460, 594
NmeAIII GCCGAG 1 cut(s) 194
NspI RCATGY 1 cut(s) 42
OliI CACNNNNGTG 1 cut(s) 107
PceI AGGCCT 1 cut(s) 886
PciI ACATGT 1 cut(s) 38
PctI GAATGC 1 cut(s) 466
PfeI GAWTC 2 cut(s) 490, 825
PflMI CCANNNNNTGG 1 cut(s) 849
PkrI GCNGC 1 cut(s) 161
PscI ACATGT 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 368
Psp6I CCWGG 4 cut(s) 172, 388, 820, 848
PspGI CCWGG 4 cut(s) 172, 388, 820, 848
PstNI CAGNNNCTG 1 cut(s) 849
RseI CAYNNNNRTG 1 cut(s) 107
SacI GAGCTC 1 cut(s) 368
SaqAI TTAA 4 cut(s) 317, 333, 395, 753
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 1 cut(s) 99
ScrFI CCNGG 4 cut(s) 174, 390, 822, 850
SduI GDGCHC 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 3 cut(s) 151, 316, 466
SmoI CTYRAG 3 cut(s) 151, 316, 466
Sse9I AATT 7 cut(s) 238, 330, 524, 541, 584, 608, 754
SseBI AGGCCT 1 cut(s) 886
SsiI CCGC 2 cut(s) 93, 116
SstI GAGCTC 1 cut(s) 368
StuI AGGCCT 1 cut(s) 886
StyD4I CCNGG 4 cut(s) 172, 388, 820, 848
StyI CCWWGG 1 cut(s) 590
TaaI ACNGT 1 cut(s) 106
TasI AATT 7 cut(s) 238, 330, 524, 541, 584, 608, 754
TfiI GAWTC 2 cut(s) 490, 825
Tru1I TTAA 4 cut(s) 317, 333, 395, 753
Tru9I TTAA 4 cut(s) 317, 333, 395, 753
TseI GCWGC 1 cut(s) 159
TspDTI ATGAA 2 cut(s) 251, 473
Van91I CCANNNNNTGG 1 cut(s) 849
Vha464I CTTAAG 1 cut(s) 316
XapI RAATTY 1 cut(s) 238
XceI RCATGY 1 cut(s) 42
XmiI GTMKAC 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.