FvH4_4g23200

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015015
Physical Location & Seq
Forward (+)
25766721 .. 25768539
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23200.t1

Sequence Viewer

Length: 939 bp
ATGGTTATAGATCATATAGTCATGTTCCATCTTCTTCTTCTTCTTACATGTTTCCTCACTCACCCCATTGCTTCGGTAGCTCATCAACCAACTGCACCAACCGCTCGGATTACCGTCGTAGGAGCGGTTTACTGTGATACTTGTTCAAGCAACACATTTTCCAGAAGCAGCTACTTTCTCCCAGGTGTGGATGTTGTGATACAATGCAAGTTCAGAGGGAGCTCAACCAAAGCCTCAGAGGATATGAATTTCTCAGTGAATAAAACCACAAACAAGTATGGGGTGTACAAGCTGGAAATACCTTCAGTTGATGGGGTAAACTGCTTAAGTGGTGTGTCAATTAAGTCAATGTGCCAAGCAAGTTTGATAGGGAGCTCATCCAAAAGTTGCAATGTTCCTGGTTTAAGAACCACAGCAGATGAGATTTCTGTCAAGTCAAAACAAGATAACATCTGTATTTACAGCATGAATGCTCTGAGTTACAGGCCACCAAAGAAGAATCTTACCCTATGTGGAAATAGGAAGGAGGAGGAATTGGCAAGTTCTTTCAATTCCTCCAAGTTTTTTCTCCCATACTTTCCACCATTCTATGGAATCCCTTGGCCTCCTTTGCCTCAATTCCCTTTTCCTCCTCTTCCTCAATTCCCATTCCCTCCTCTTCCACCTCTACCATCTCTGCCCCCATTTCCATCTTTTCCATTCCCTCCATCTTTGCCATTCCCATTCCCAAGTCTCCCTCCTTTTCCATCCCCAAATCCTTTGGCCCCAAACACTCCACCTCCATTTAATTTAGGAGACCCAAGAACTTGGATACCTTACATCCCTTCTGTCTTTCCTCCACCTCCTCCCCCACCAGGATTCAATCTCAGAGACCCCAGAACCTGGATACCATATATTCCTCCATCCCCTCCTAACAGGCCTCAAAACCACAACCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

313

Amino Acids

34.41

Weight (kDa)

9.04

Isoelectric Point (pI)

65.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 39 - 134 6.8e-19 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13140
fragaria_vesca FvH4_4g23200
malus_domestica MD13G1123800.v1.1 MD16G1124400.v1.1
prunus_persica Prupe.1G221100_v2.0.a1
pyrus_communis pycom13g10830
rosa_chinensis RchiOBHm_Chr4g0429561
rosa_laevigata RLG00000007061
rosa_multiflora Rmu_sc0013305.1_g000002
rosa_roxburghii Rroxscaffold_5G00371260
rosa_rugosa Rorug04G0237100
rosa_samantha Rh4AG292900 Rh4BG298600 Rh4CG314100 Rh4DG295600
rosa_wichuraiana Rw4G025350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 590, 882
AccBSI CCGCTC 2 cut(s) 104, 125
AciI CCGC 2 cut(s) 102, 125
AcsI RAATTY 1 cut(s) 247
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 4 cut(s) 187, 590, 854, 882
AflII CTTAAG 1 cut(s) 325
AflIII ACRYGT 1 cut(s) 47
AgsI TTSAA 3 cut(s) 147, 550, 862
AjnI CCWGG 4 cut(s) 181, 397, 853, 881
AluBI AGCT 5 cut(s) 80, 171, 222, 292, 375
AluI AGCT 5 cut(s) 80, 171, 222, 292, 375
Alw21I GWGCWC 2 cut(s) 224, 377
Alw26I GTCTC 3 cut(s) 737, 789, 864
AlwNI CAGNNNCTG 1 cut(s) 882
AoxI GGCC 4 cut(s) 485, 602, 762, 917
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 763
AsuHPI GGTGA 1 cut(s) 53
BanII GRGCYC 2 cut(s) 224, 377
Bbv12I GWGCWC 2 cut(s) 224, 377
BbvI GCAGC 1 cut(s) 180
BccI CCATC 7 cut(s) 36, 305, 679, 697, 715, 754, 910
BciT130I CCWGG 4 cut(s) 183, 399, 855, 883
BciVI GTATCC 2 cut(s) 804, 879
BcoDI GTCTC 3 cut(s) 737, 789, 864
BfrI CTTAAG 1 cut(s) 325
BfuI GTATCC 2 cut(s) 804, 879
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme1390I CCNGG 4 cut(s) 183, 399, 855, 883
BmgT120I GGNCC 1 cut(s) 763
BmiI GGNNCC 1 cut(s) 765
BmrFI CCNGG 4 cut(s) 183, 399, 855, 883
BsaI GGTCTC 2 cut(s) 789, 864
BsaJI CCNNGG 2 cut(s) 181, 599
BsaXI ACNNNNNCTCC 2 cut(s) 763, 793
Bsc4I CCNNNNNNNGG 4 cut(s) 187, 590, 854, 882
Bse3DI GCAATG 2 cut(s) 66, 397
BseBI CCWGG 4 cut(s) 183, 399, 855, 883
BseDI CCNNGG 2 cut(s) 181, 599
BseGI GGATG 5 cut(s) 196, 377, 746, 819, 902
BseLI CCNNNNNNNGG 4 cut(s) 187, 590, 854, 882
BseMI GCAATG 2 cut(s) 66, 397
BseMII CTCAG 4 cut(s) 249, 267, 467, 880
BseRI GAGGAG 4 cut(s) 542, 621, 645, 834
BseXI GCAGC 1 cut(s) 180
BsgI GTGCAG 1 cut(s) 78
BshFI GGCC 4 cut(s) 487, 604, 764, 919
BsiHKAI GWGCWC 2 cut(s) 224, 377
BslI CCNNNNNNNGG 4 cut(s) 187, 590, 854, 882
BsmAI GTCTC 3 cut(s) 737, 789, 864
BsmI GAATGC 1 cut(s) 475
BsnI GGCC 4 cut(s) 487, 604, 764, 919
Bso31I GGTCTC 2 cut(s) 789, 864
Bsp1286I GDGCHC 2 cut(s) 224, 377
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 2 cut(s) 102, 125
BspANI GGCC 4 cut(s) 487, 604, 764, 919
BspCNI CTCAG 4 cut(s) 248, 266, 468, 879
BspLI GGNNCC 1 cut(s) 765
BspTI CTTAAG 1 cut(s) 325
BspTNI GGTCTC 2 cut(s) 789, 864
BsrBI CCGCTC 2 cut(s) 104, 125
BsrDI GCAATG 2 cut(s) 66, 397
BsrGI TGTACA 1 cut(s) 285
BssECI CCNNGG 2 cut(s) 181, 599
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 599
Bst2UI CCWGG 4 cut(s) 183, 399, 855, 883
Bst4CI ACNGT 2 cut(s) 115, 134
Bst6I CTCTTC 2 cut(s) 639, 663
BstAFI CTTAAG 1 cut(s) 325
BstAUI TGTACA 1 cut(s) 285
BstDEI CTNAG 4 cut(s) 235, 253, 476, 866
BstF5I GGATG 5 cut(s) 196, 377, 746, 819, 902
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 3 cut(s) 737, 789, 864
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 3 cut(s) 77, 101, 610
BstNI CCWGG 4 cut(s) 183, 399, 855, 883
BstNSI RCATGY 1 cut(s) 51
BstSCI CCNGG 4 cut(s) 181, 397, 853, 881
BstV1I GCAGC 1 cut(s) 180
BstXI CCANNNNNNTGG 1 cut(s) 807
BsuI GTATCC 2 cut(s) 804, 879
BsuRI GGCC 4 cut(s) 487, 604, 764, 919
BtsCI GGATG 5 cut(s) 196, 377, 746, 819, 902
BtsIMutI CAGTG 1 cut(s) 261
CaiI CAGNNNCTG 1 cut(s) 882
Cfr13I GGNCC 1 cut(s) 763
Csp6I GTAC 1 cut(s) 286
CviAII CATG 3 cut(s) 22, 48, 466
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 4 cut(s) 235, 253, 476, 866
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eam1104I CTCTTC 2 cut(s) 639, 663
EarI CTCTTC 2 cut(s) 639, 663
Ecl136II GAGCTC 2 cut(s) 222, 375
Eco130I CCWWGG 1 cut(s) 599
Eco147I AGGCCT 1 cut(s) 919
Eco24I GRGCYC 2 cut(s) 224, 377
Eco31I GGTCTC 2 cut(s) 789, 864
Eco53kI GAGCTC 2 cut(s) 222, 375
Eco57I CTGAAG 1 cut(s) 288
EcoICRI GAGCTC 2 cut(s) 222, 375
EcoRII CCWGG 4 cut(s) 181, 397, 853, 881
EcoT14I CCWWGG 1 cut(s) 599
EcoT38I GRGCYC 2 cut(s) 224, 377
ErhI CCWWGG 1 cut(s) 599
FaeI CATG 3 cut(s) 25, 51, 469
FatI CATG 3 cut(s) 21, 47, 465
Fnu4HI GCNGC 1 cut(s) 169
FokI GGATG 5 cut(s) 203, 364, 733, 806, 889
FriOI GRGCYC 2 cut(s) 224, 377
Fsp4HI GCNGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 169
HaeIII GGCC 4 cut(s) 487, 604, 764, 919
Hin1II CATG 3 cut(s) 25, 51, 469
HinfI GANTC 3 cut(s) 499, 594, 858
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 3 cut(s) 130, 286, 319
Hpy188I TCNGA 5 cut(s) 108, 215, 238, 477, 869
Hpy188III TCNNGA 1 cut(s) 162
Hpy8I GTNNAC 3 cut(s) 130, 286, 319
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 3 cut(s) 312, 517, 834
HpyCH4III ACNGT 2 cut(s) 115, 134
HpyCH4V TGCA 3 cut(s) 95, 207, 390
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 101, 610
HpyF3I CTNAG 4 cut(s) 235, 253, 476, 866
Hsp92II CATG 3 cut(s) 25, 51, 469
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 3 cut(s) 122, 219, 372
Lsp1109I GCAGC 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 479
MalI GATC 1 cut(s) 12
MbiI CCGCTC 2 cut(s) 104, 125
MboI GATC 1 cut(s) 10
MboII GAAGA 7 cut(s) 23, 26, 29, 32, 508, 626, 650
MhlI GDGCHC 2 cut(s) 224, 377
MluCI AATT 7 cut(s) 247, 339, 533, 550, 617, 641, 787
MseI TTAA 4 cut(s) 326, 342, 404, 786
MspCI CTTAAG 1 cut(s) 325
MspR9I CCNGG 4 cut(s) 183, 399, 855, 883
Mva1269I GAATGC 1 cut(s) 475
MvaI CCWGG 4 cut(s) 183, 399, 855, 883
MwoI GCNNNNNNNGC 3 cut(s) 77, 101, 610
NdeII GATC 1 cut(s) 10
NlaIII CATG 3 cut(s) 25, 51, 469
NlaIV GGNNCC 1 cut(s) 765
NspI RCATGY 1 cut(s) 51
PceI AGGCCT 1 cut(s) 919
PciI ACATGT 1 cut(s) 47
PctI GAATGC 1 cut(s) 475
PfeI GAWTC 3 cut(s) 499, 594, 858
PflMI CCANNNNNTGG 2 cut(s) 590, 882
PkrI GCNGC 1 cut(s) 170
PscI ACATGT 1 cut(s) 47
Psp124BI GAGCTC 2 cut(s) 224, 377
Psp6I CCWGG 4 cut(s) 181, 397, 853, 881
PspGI CCWGG 4 cut(s) 181, 397, 853, 881
PspN4I GGNNCC 1 cut(s) 765
PspPI GGNCC 1 cut(s) 763
PstNI CAGNNNCTG 1 cut(s) 882
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SacI GAGCTC 2 cut(s) 224, 377
SaqAI TTAA 4 cut(s) 326, 342, 404, 786
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 763
ScrFI CCNGG 4 cut(s) 183, 399, 855, 883
SduI GDGCHC 2 cut(s) 224, 377
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 7 cut(s) 247, 339, 533, 550, 617, 641, 787
SseBI AGGCCT 1 cut(s) 919
SsiI CCGC 2 cut(s) 102, 125
SstI GAGCTC 2 cut(s) 224, 377
StuI AGGCCT 1 cut(s) 919
StyD4I CCNGG 4 cut(s) 181, 397, 853, 881
StyI CCWWGG 1 cut(s) 599
TaaI ACNGT 2 cut(s) 115, 134
TasI AATT 7 cut(s) 247, 339, 533, 550, 617, 641, 787
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 3 cut(s) 499, 594, 858
Tru1I TTAA 4 cut(s) 326, 342, 404, 786
Tru9I TTAA 4 cut(s) 326, 342, 404, 786
TscAI CASTG 1 cut(s) 261
TseI GCWGC 1 cut(s) 168
TspDTI ATGAA 2 cut(s) 260, 482
TspRI CASTG 1 cut(s) 261
Van91I CCANNNNNTGG 2 cut(s) 590, 882
Vha464I CTTAAG 1 cut(s) 325
XapI RAATTY 1 cut(s) 247
XceI RCATGY 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.