AT5G13420

Transaldolase/Fructose-6-phosphate aldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011006
Physical Location & Seq
Reverse (-)
4301792 .. 4304315
2524 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13420.1

Sequence Viewer

Length: 1317 bp
ATGGCAACCATTTCGAATCTCGCTAATCTTCCCCGCGCCACCTGCGTCGACTCCAAATCTTCTTCCTCTTCCTCCGTCTTACCTAGATCCTTCGTCAATTTCCGCGCTTTGAATGCAAAGCTTTCCTCTTCTCAGCTTTCTCTTCGTTATAACCAACGATCAATACCTTCCCTCTCTGTGAGGTGTTCAGTGTCTGGTGGAAATGGAACTGCTGGAAAGAGAACGACTCTTCATGATCTATATGAGAAGGAAGGTCAGAGTCCTTGGTATGATAATCTTTGCCGTCCAGTCACAGATCTTCTCCCGTTGATTGCTCGTGGTGTTAGAGGTGTTACTAGCAACCCTGCGATCTTCCAAAAAGCCATTTCCACTTCAAATGCTTATAATGATCAATTCAGGACACTTGTGGAATCGGGAAAGGACATTGAAAGTGCGTATTGGGAACTTGTGGTGAAGGATATTCAGGATGCCTGCAAACTTTTTGAGCCAATCTATGACCAGACAGAAGGTGCGGATGGCTATGTCTCTGTTGAAGTTTCACCTAGGCTTGCTGATGATACCCAAGGAACTGTTGAAGCTGCTAAATATCTTAGCAAGGTTGTCAACCGTCGTAATGTCTACATTAAGATTCCTGCTACTGCTCCATGCATTCCTTCCATCAGGGATGTCATTGCAGCTGGAATAAGTGTCAATGTCACGCTTATATTCTCAATCGCCAGATATGAAGCAGTGATCGATGCATATTTGGATGGCCTCGAGGCGTCTGGACTTGATGACCTCTCAAGAGTTACCAGTGTTGCTTCCTTCTTTGTCAGTCGGGTGGATACTCTCATGGACAAGATGCTTGAGCAAATTGGTACCCCTGAAGCCTTAGATCTCCGTGGGAAGGCGGCTGTGGCTCAAGCTGCATTAGCATACAAGCTATACCAGCAGAAATTCTCTGGCCCAAGATGGGAAGCTCTGGTAAAGAAAGGTGCCAAGAAACAGAGACTTCTCTGGGCATCAACAAGTGTAAAGAACCCAGCTTACTCTGACACCTTATATGTCGCTCCTCTCATCGGACCTGACACTGTATCAACCATGCCGGATCAAGCCCTGGAAGCATTCGCAGATCATGGAATAGTGAAGAGGACAATAGATGCGAATGTGTCAGAAGCAGAAGGGATTTACAGTGCACTAGAGAAGCTGGGAATAGACTGGAACAAAGTAGGAGAACAGTTGGAAGACGAAGGAGTAGATTCCTTCAAGAAGAGTTTCGAGAGTCTGCTCGGTACACTGCAAGACAAGGCCAACACTCTCAAACTAGCCAGCCATTGA

Protein Analysis

438

Amino Acids

47.7

Weight (kDa)

6.08

Isoelectric Point (pI)

28.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAL_FSA PF00923 103 - 425 1.4e-79 Transaldolase/Fructose-6-phosphate aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13420
fragaria_vesca FvH4_4g22560 FvH4_4g22560 FvH4_4g22560
malus_domestica MD13G1131400.v1.1 MD16G1141700.v1.1
prunus_persica Prupe.1G214200_v2.0.a1 Prupe.1G214200_v2.0.a1
pyrus_communis pycom13g11470 pycom16g11220
rosa_chinensis RchiOBHm_Chr4g0428801
rosa_laevigata RLG00000007124
rosa_multiflora Rmu_ssc0000273.1_g000001
rosa_roxburghii Rroxscaffold_5G00370480
rosa_rugosa Rorug04G0229100 Rorug04G0229100
rosa_samantha Rh4AG286000 Rh4BG291800 Rh4CG307800
rosa_wichuraiana Rw4G024790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 150, 384
AarI CACCTGC 1 cut(s) 50
AbsI CCTCGAGG 1 cut(s) 755
Acc36I ACCTGC 1 cut(s) 50
Acc65I GGTACC 1 cut(s) 857
AccB1I GGYRCC 2 cut(s) 857, 974
AccI GTMKAC 2 cut(s) 48, 618
AccII CGCG 2 cut(s) 36, 105
AciI CCGC 4 cut(s) 34, 103, 512, 890
AclWI GGATC 2 cut(s) 81, 1095
AcsI RAATTY 1 cut(s) 935
AcuI CTGAAG 1 cut(s) 885
AcyI GRCGYC 1 cut(s) 761
AfaI GTAC 2 cut(s) 859, 1273
AfiI CCNNNNNNNGG 3 cut(s) 886, 952, 1058
AgsI TTSAA 6 cut(s) 112, 375, 428, 533, 575, 1246
AjnI CCWGG 1 cut(s) 1095
AluBI AGCT 9 cut(s) 121, 136, 578, 677, 905, 922, 959, 1025, 1186
AluI AGCT 9 cut(s) 121, 136, 578, 677, 905, 922, 959, 1025, 1186
Alw21I GWGCWC 1 cut(s) 1177
Alw26I GTCTC 2 cut(s) 529, 982
Alw44I GTGCAC 1 cut(s) 1173
AlwI GGATC 2 cut(s) 81, 1095
AlwNI CAGNNNCTG 1 cut(s) 194
Ama87I CYCGRG 1 cut(s) 755
AoxI GGCC 3 cut(s) 751, 943, 1287
ApaLI GTGCAC 1 cut(s) 1173
ApeKI GCWGC 3 cut(s) 578, 674, 905
ApoI RAATTY 1 cut(s) 935
Asp700I GAANNNNTTC 1 cut(s) 1253
Asp718I GGTACC 1 cut(s) 857
AspA2I CCTAGG 1 cut(s) 542
AspLEI GCGC 2 cut(s) 38, 107
AspS9I GGNCC 2 cut(s) 944, 1061
AsuHPI GGTGA 2 cut(s) 463, 531
AsuII TTCGAA 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 755
AvaII GGWCC 1 cut(s) 1061
AvrII CCTAGG 1 cut(s) 542
BaeGI GKGCMC 1 cut(s) 1177
BanI GGYRCC 2 cut(s) 857, 974
BauI CACGAG 1 cut(s) 315
BbsI GAAGAC 1 cut(s) 1230
Bbv12I GWGCWC 1 cut(s) 1177
BbvI GCAGC 3 cut(s) 565, 686, 892
BccI CCATC 4 cut(s) 509, 665, 743, 945
BceAI ACGGC 1 cut(s) 267
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 1097
BciVI GTATCC 1 cut(s) 817
BclI TGATCA 1 cut(s) 388
BcoDI GTCTC 2 cut(s) 529, 982
BfaI CTAG 5 cut(s) 84, 336, 543, 1178, 1304
BfuAI ACCTGC 1 cut(s) 50
BfuI GTATCC 1 cut(s) 817
BglII AGATCT 2 cut(s) 295, 874
BisI GCNGC 4 cut(s) 579, 675, 891, 906
BlnI CCTAGG 1 cut(s) 542
BlsI GCNGC 4 cut(s) 580, 676, 892, 907
Bme1390I CCNGG 1 cut(s) 1097
Bme18I GGWCC 1 cut(s) 1061
BmeT110I CYCGRG 1 cut(s) 755
BmgT120I GGNCC 2 cut(s) 944, 1061
BmiI GGNNCC 2 cut(s) 859, 976
BmrFI CCNGG 1 cut(s) 1097
BmsI GCATC 5 cut(s) 457, 727, 831, 1010, 1129
BpiI GAAGAC 1 cut(s) 1230
BplI GAGNNNNNCTC 2 cut(s) 211, 243
Bpu14I TTCGAA 1 cut(s) 14
BpuEI CTTGAG 3 cut(s) 766, 866, 885
Bsa29I ATCGAT 1 cut(s) 735
BsaHI GRCGYC 1 cut(s) 761
BsaJI CCNNGG 5 cut(s) 263, 542, 562, 880, 1095
Bsc4I CCNNNNNNNGG 3 cut(s) 886, 952, 1058
Bse1I ACTGG 3 cut(s) 287, 792, 1202
Bse3DI GCAATG 1 cut(s) 669
BseBI CCWGG 1 cut(s) 1097
BseCI ATCGAT 1 cut(s) 735
BseDI CCNNGG 5 cut(s) 263, 542, 562, 880, 1095
BseGI GGATG 4 cut(s) 472, 520, 670, 754
BseLI CCNNNNNNNGG 3 cut(s) 886, 952, 1058
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 3 cut(s) 287, 792, 1202
BseRI GAGGAG 1 cut(s) 1041
BseSI GKGCMC 1 cut(s) 1177
BseXI GCAGC 3 cut(s) 565, 686, 892
BseYI CCCAGC 2 cut(s) 1021, 1186
Bsh1236I CGCG 2 cut(s) 36, 105
BshFI GGCC 3 cut(s) 753, 945, 1289
BshNI GGYRCC 2 cut(s) 857, 974
BshVI ATCGAT 1 cut(s) 735
BsiHKAI GWGCWC 1 cut(s) 1177
BsiHKCI CYCGRG 1 cut(s) 755
BsiSI CCGG 1 cut(s) 1085
BslI CCNNNNNNNGG 3 cut(s) 886, 952, 1058
BsmAI GTCTC 2 cut(s) 529, 982
BsmI GAATGC 3 cut(s) 118, 648, 1103
BsnI GGCC 3 cut(s) 753, 945, 1289
BsoBI CYCGRG 1 cut(s) 755
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 1177
BspACI CCGC 4 cut(s) 34, 103, 512, 890
BspANI GGCC 3 cut(s) 753, 945, 1289
BspCNI CTCAG 1 cut(s) 145
BspDI ATCGAT 1 cut(s) 735
BspFNI CGCG 2 cut(s) 36, 105
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 859, 976
BspMI ACCTGC 1 cut(s) 50
BspPI GGATC 2 cut(s) 81, 1095
BspT104I TTCGAA 1 cut(s) 14
BspT107I GGYRCC 2 cut(s) 857, 974
BsrDI GCAATG 1 cut(s) 669
BsrI ACTGG 3 cut(s) 287, 792, 1202
BssECI CCNNGG 5 cut(s) 263, 542, 562, 880, 1095
BssNI GRCGYC 1 cut(s) 761
BssSI CACGAG 1 cut(s) 315
BssT1I CCWWGG 3 cut(s) 263, 542, 562
Bst2BI CACGAG 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 1097
Bst4CI ACNGT 5 cut(s) 571, 608, 1072, 1172, 1218
Bst6I CTCTTC 6 cut(s) 73, 133, 147, 234, 1121, 1244
BstACI GRCGYC 1 cut(s) 761
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 3 cut(s) 472, 549, 1309
BstDEI CTNAG 3 cut(s) 132, 590, 871
BstDSI CCRYGG 1 cut(s) 880
BstF5I GGATG 4 cut(s) 472, 520, 670, 754
BstFNI CGCG 2 cut(s) 36, 105
BstHHI GCGC 2 cut(s) 38, 107
BstMAI GTCTC 2 cut(s) 529, 982
BstMWI GCNNNNNNNGC 7 cut(s) 42, 113, 896, 905, 911, 928, 1100
BstNI CCWGG 1 cut(s) 1097
BstSCI CCNGG 1 cut(s) 1095
BstSLI GKGCMC 1 cut(s) 1177
BstUI CGCG 2 cut(s) 36, 105
BstV1I GCAGC 3 cut(s) 565, 686, 892
BstV2I GAAGAC 1 cut(s) 1230
BstX2I RGATCY 3 cut(s) 86, 295, 874
BstYI RGATCY 3 cut(s) 86, 295, 874
Bsu15I ATCGAT 1 cut(s) 735
BsuI GTATCC 1 cut(s) 817
BsuRI GGCC 3 cut(s) 753, 945, 1289
BsuTUI ATCGAT 1 cut(s) 735
BtgI CCRYGG 1 cut(s) 880
BtsCI GGATG 4 cut(s) 472, 520, 670, 754
BtsI GCAGTG 2 cut(s) 735, 1274
BtsIMutI CAGTG 6 cut(s) 195, 735, 799, 1068, 1177, 1274
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 3 cut(s) 472, 549, 1309
CaiI CAGNNNCTG 1 cut(s) 194
CciI TCATGA 1 cut(s) 232
CfoI GCGC 2 cut(s) 38, 107
Cfr13I GGNCC 2 cut(s) 944, 1061
ClaI ATCGAT 1 cut(s) 735
CseI GACGC 2 cut(s) 34, 750
Csp6I GTAC 2 cut(s) 858, 1272
CviAII CATG 5 cut(s) 233, 645, 832, 1081, 1115
CviQI GTAC 2 cut(s) 858, 1272
DdeI CTNAG 3 cut(s) 132, 590, 871
Eam1104I CTCTTC 6 cut(s) 73, 133, 147, 234, 1121, 1244
EarI CTCTTC 6 cut(s) 73, 133, 147, 234, 1121, 1244
Eco130I CCWWGG 3 cut(s) 263, 542, 562
Eco47I GGWCC 1 cut(s) 1061
Eco57I CTGAAG 1 cut(s) 885
Eco88I CYCGRG 1 cut(s) 755
EcoRII CCWGG 1 cut(s) 1095
EcoT14I CCWWGG 3 cut(s) 263, 542, 562
EcoT22I ATGCAT 2 cut(s) 650, 742
ErhI CCWWGG 3 cut(s) 263, 542, 562
FaeI CATG 5 cut(s) 236, 648, 835, 1084, 1118
FatI CATG 5 cut(s) 232, 644, 831, 1080, 1114
FauI CCCGC 1 cut(s) 41
FbaI TGATCA 1 cut(s) 388
FblI GTMKAC 2 cut(s) 48, 618
Fnu4HI GCNGC 4 cut(s) 579, 675, 891, 906
FokI GGATG 4 cut(s) 479, 527, 677, 761
Fsp4HI GCNGC 4 cut(s) 579, 675, 891, 906
FspBI CTAG 5 cut(s) 84, 336, 543, 1178, 1304
GlaI GCGC 2 cut(s) 37, 106
GluI GCNGC 4 cut(s) 579, 675, 891, 906
GsaI CCCAGC 2 cut(s) 1025, 1190
HaeIII GGCC 3 cut(s) 753, 945, 1289
HapII CCGG 1 cut(s) 1085
HgaI GACGC 2 cut(s) 34, 750
HhaI GCGC 2 cut(s) 38, 107
Hin1I GRCGYC 1 cut(s) 761
Hin1II CATG 5 cut(s) 236, 648, 835, 1084, 1118
Hin6I GCGC 2 cut(s) 36, 105
HinP1I GCGC 2 cut(s) 36, 105
HincII GTYRAC 2 cut(s) 49, 604
HindII GTYRAC 2 cut(s) 49, 604
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 8 cut(s) 16, 50, 226, 259, 410, 628, 1238, 1261
HpaII CCGG 1 cut(s) 1085
HphI GGTGA 2 cut(s) 463, 531
Hpy166II GTNNAC 5 cut(s) 49, 604, 619, 1175, 1274
Hpy188I TCNGA 4 cut(s) 258, 1033, 1061, 1153
Hpy188III TCNNGA 8 cut(s) 233, 397, 414, 464, 765, 783, 1246, 1258
Hpy8I GTNNAC 5 cut(s) 49, 604, 619, 1175, 1274
Hpy99I CGWCG 2 cut(s) 50, 612
HpyCH4III ACNGT 5 cut(s) 571, 608, 1072, 1172, 1218
HpyCH4V TGCA 8 cut(s) 116, 474, 648, 674, 740, 908, 1175, 1279
HpyF10VI GCNNNNNNNGC 7 cut(s) 42, 113, 896, 905, 911, 928, 1100
HpyF3I CTNAG 3 cut(s) 132, 590, 871
Hsp92I GRCGYC 1 cut(s) 761
Hsp92II CATG 5 cut(s) 236, 648, 835, 1084, 1118
HspAI GCGC 2 cut(s) 36, 105
KpnI GGTACC 1 cut(s) 861
Ksp22I TGATCA 1 cut(s) 388
LmnI GCTCC 2 cut(s) 646, 1054
Lsp1109I GCAGC 3 cut(s) 565, 686, 892
LweI GCATC 5 cut(s) 457, 727, 831, 1010, 1129
MaeI CTAG 5 cut(s) 84, 336, 543, 1178, 1304
MaeIII GTNAC 4 cut(s) 289, 331, 694, 787
MflI RGATCY 3 cut(s) 86, 295, 874
MhlI GDGCHC 1 cut(s) 1177
MluCI AATT 4 cut(s) 97, 392, 852, 935
MlyI GAGTC 4 cut(s) 44, 220, 268, 1270
MmeI TCCRAC 1 cut(s) 1200
Mph1103I ATGCAT 2 cut(s) 650, 742
MroXI GAANNNNTTC 1 cut(s) 1253
MseI TTAA 1 cut(s) 624
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 1 cut(s) 1085
MspR9I CCNGG 1 cut(s) 1097
Mva1269I GAATGC 3 cut(s) 118, 648, 1103
MvaI CCWGG 1 cut(s) 1097
MvnI CGCG 2 cut(s) 36, 105
MwoI GCNNNNNNNGC 7 cut(s) 42, 113, 896, 905, 911, 928, 1100
NlaIII CATG 5 cut(s) 236, 648, 835, 1084, 1118
NlaIV GGNNCC 2 cut(s) 859, 976
NmuCI GTSAC 2 cut(s) 289, 694
NsiI ATGCAT 2 cut(s) 650, 742
NspV TTCGAA 1 cut(s) 14
PaeR7I CTCGAG 1 cut(s) 755
PagI TCATGA 1 cut(s) 232
PaqCI CACCTGC 1 cut(s) 50
PctI GAATGC 3 cut(s) 118, 648, 1103
PdmI GAANNNNTTC 1 cut(s) 1253
PfeI GAWTC 4 cut(s) 16, 410, 628, 1238
PkrI GCNGC 4 cut(s) 580, 676, 892, 907
PleI GAGTC 4 cut(s) 44, 220, 267, 1269
PpsI GAGTC 4 cut(s) 44, 220, 267, 1269
PsiI TTATAA 2 cut(s) 150, 384
Psp6I CCWGG 1 cut(s) 1095
PspFI CCCAGC 2 cut(s) 1021, 1186
PspGI CCWGG 1 cut(s) 1095
PspN4I GGNNCC 2 cut(s) 859, 976
PspPI GGNCC 2 cut(s) 944, 1061
PspXI VCTCGAGB 1 cut(s) 755
PsrI GAACNNNNNNTAC 2 cut(s) 1010, 1042
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 3 cut(s) 86, 295, 874
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 2 cut(s) 859, 1273
RsaNI GTAC 2 cut(s) 858, 1272
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 624
SatI GCNGC 4 cut(s) 579, 675, 891, 906
Sau96I GGNCC 2 cut(s) 944, 1061
SchI GAGTC 4 cut(s) 44, 220, 268, 1270
ScrFI CCNGG 1 cut(s) 1097
SduI GDGCHC 1 cut(s) 1177
SfaNI GCATC 5 cut(s) 457, 727, 831, 1010, 1129
Sfr274I CTCGAG 1 cut(s) 755
SfuI TTCGAA 1 cut(s) 14
SinI GGWCC 1 cut(s) 1061
SlaI CTCGAG 1 cut(s) 755
SmlI CTYRAG 4 cut(s) 755, 781, 845, 900
SmoI CTYRAG 4 cut(s) 755, 781, 845, 900
Sse9I AATT 4 cut(s) 97, 392, 852, 935
SsiI CCGC 4 cut(s) 34, 103, 512, 890
SspMI CTAG 5 cut(s) 84, 336, 543, 1178, 1304
StyD4I CCNGG 1 cut(s) 1095
StyI CCWWGG 3 cut(s) 263, 542, 562
TaaI ACNGT 5 cut(s) 571, 608, 1072, 1172, 1218
TaqI TCGA 5 cut(s) 14, 48, 735, 756, 1257
TasI AATT 4 cut(s) 97, 392, 852, 935
TauI GCSGC 1 cut(s) 893
TfiI GAWTC 4 cut(s) 16, 410, 628, 1238
Tru1I TTAA 1 cut(s) 624
Tru9I TTAA 1 cut(s) 624
TscAI CASTG 6 cut(s) 195, 735, 799, 1075, 1177, 1281
TseFI GTSAC 2 cut(s) 289, 694
TseI GCWGC 3 cut(s) 578, 674, 905
Tsp45I GTSAC 2 cut(s) 289, 694
TspDTI ATGAA 2 cut(s) 221, 738
TspGWI ACGGA 2 cut(s) 64, 869
TspRI CASTG 6 cut(s) 195, 735, 799, 1075, 1177, 1281
VneI GTGCAC 1 cut(s) 1173
VpaK11BI GGWCC 1 cut(s) 1061
XapI RAATTY 1 cut(s) 935
XhoI CTCGAG 1 cut(s) 755
XmaJI CCTAGG 1 cut(s) 542
XmiI GTMKAC 2 cut(s) 48, 618
XmnI GAANNNNTTC 1 cut(s) 1253
XspI CTAG 5 cut(s) 84, 336, 543, 1178, 1304
Zsp2I ATGCAT 2 cut(s) 650, 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.