Rh4AG286000

Transaldolase/Fructose-6-phosphate aldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0011006
Physical Location & Seq
Reverse (-)
60038353 .. 60041934
3582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG286000.1

Sequence Viewer

Length: 951 bp
ATGTTAGTAACTTCAATTAATGAAATTTGCAGGGAACTTGTACAGTCAGGGAAAGACATTGAAACTGCATATTGGGAACTTGTGGTGAAGGACATTCAAGACGCTTGCAAGCTTTTTGAGTCAATCTATGATCAAACTGATGCTGCTGATGGCTATGTTTCTGTTGAAGTTTCTCCCAGACTTGCTGATGACACTGAAGGGACTGTAGAGGCTGCAAAATGGTTACATAAAGTTGTTTCCCGACCCAATGTCTACATTAAGATTCCCGCTACCGCTCCATGCATCCCTTCTATTAAGGAAGTTATAGCAAATGGCATCAGTGTCAATGTGACTCTTATATTCTCTCTCACTAGATACGAGGCAGTCATTGATGCGTATTTGGATGGCCTTGAGGCTTCTGGCCTAGACGACCTCTCCAGAGTAACAAGTGTTGCTTCCTTCTTTGTCAGTAGGGTTGACACCCTTATTGACAAGTTGCTTGAAAAGATTGGAACTCCAGAGGCCCTTGACCTTCGAGGAAAGGCTGCAGTAGCTCAAGCCGCTTTAGCGTACCAACTATACCAGAAGAAATTCTCAGGTCCCAGATGGGAGGCTTTGGTGAAGAAGGGTGCTAAGAAGCAGAGGCTGCTGTGGGCCTCAACCAGTGTCAAGAATCCCGCCTACCCTGATACTTTATATGTTGCTCCTCTCATTGGTCCTGACACGGTTTCAACCATGCCTGACCAAGCTCTGCAAGCCTTCCTCGATCATGGAACTGTTTCAAGGACAATTGATTCCAATGTATCAGAGGCTGAAGGCATTTACAGTGCCCTTGAGCATCTTGGAATTGACTGGAGCTATGTTGGTAACCAACTCGAACTTGAAGGAGTGGACTCTTTCAAGAAGAGTTTTGACAGCCTGCTTGATACTCTGCAAGAGAAGGCCAACTCTCTTAAATTGGTTAGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

316

Amino Acids

34.63

Weight (kDa)

4.78

Isoelectric Point (pI)

21.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAL_FSA PF00923 6 - 303 2.5e-67 Transaldolase/Fructose-6-phosphate aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13420
fragaria_vesca FvH4_4g22560 FvH4_4g22560 FvH4_4g22560
malus_domestica MD13G1131400.v1.1 MD16G1141700.v1.1
prunus_persica Prupe.1G214200_v2.0.a1 Prupe.1G214200_v2.0.a1
pyrus_communis pycom13g11470 pycom16g11220
rosa_chinensis RchiOBHm_Chr4g0428801
rosa_laevigata RLG00000007124
rosa_multiflora Rmu_ssc0000273.1_g000001
rosa_roxburghii Rroxscaffold_5G00370480
rosa_rugosa Rorug04G0229100 Rorug04G0229100
rosa_samantha Rh4AG286000 Rh4BG291800 Rh4CG307800
rosa_wichuraiana Rw4G024790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 275
AccI GTMKAC 1 cut(s) 252
AciI CCGC 4 cut(s) 267, 273, 540, 657
AcsI RAATTY 2 cut(s) 24, 569
AcuI CTGAAG 2 cut(s) 216, 813
AfaI GTAC 2 cut(s) 42, 551
AfiI CCNNNNNNNGG 1 cut(s) 692
AgsI TTSAA 9 cut(s) 15, 62, 98, 167, 482, 711, 762, 863, 880
AhdI GACNNNNNGTC 1 cut(s) 248
AluBI AGCT 4 cut(s) 112, 533, 728, 837
AluI AGCT 4 cut(s) 112, 533, 728, 837
AlwNI CAGNNNCTG 2 cut(s) 625, 791
AoxI GGCC 5 cut(s) 385, 400, 501, 633, 921
ApeKI GCWGC 4 cut(s) 143, 212, 524, 625
ApoI RAATTY 2 cut(s) 24, 569
AseI ATTAAT 1 cut(s) 18
Asp700I GAANNNNTTC 2 cut(s) 569, 757
AspS9I GGNCC 4 cut(s) 502, 578, 633, 695
AsuHPI GGTGA 2 cut(s) 97, 610
AvaII GGWCC 2 cut(s) 578, 695
BaeGI GKGCMC 1 cut(s) 811
BbvI GCAGC 4 cut(s) 130, 199, 511, 612
BccI CCATC 3 cut(s) 143, 377, 579
BclI TGATCA 1 cut(s) 130
BfaI CTAG 2 cut(s) 351, 404
BfmI CTRYAG 2 cut(s) 204, 525
BisI GCNGC 5 cut(s) 144, 213, 525, 540, 626
BlsI GCNGC 5 cut(s) 145, 214, 526, 541, 627
Bme18I GGWCC 2 cut(s) 578, 695
BmeRI GACNNNNNGTC 1 cut(s) 248
BmgT120I GGNCC 4 cut(s) 502, 578, 633, 695
BmiI GGNNCC 1 cut(s) 580
BmsI GCATC 5 cut(s) 130, 291, 324, 361, 826
BpmI CTGGAG 3 cut(s) 400, 480, 853
BpuEI CTTGAG 3 cut(s) 410, 519, 833
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bsc4I CCNNNNNNNGG 1 cut(s) 692
Bse1I ACTGG 2 cut(s) 642, 836
BseGI GGATG 2 cut(s) 282, 388
BseLI CCNNNNNNNGG 1 cut(s) 692
BseMII CTCAG 1 cut(s) 588
BseNI ACTGG 2 cut(s) 642, 836
BseRI GAGGAG 1 cut(s) 675
BseSI GKGCMC 1 cut(s) 811
BseXI GCAGC 4 cut(s) 130, 199, 511, 612
BshFI GGCC 5 cut(s) 387, 402, 503, 635, 923
BslFI GGGAC 2 cut(s) 214, 564
BslI CCNNNNNNNGG 1 cut(s) 692
BsmFI GGGAC 2 cut(s) 214, 564
BsnI GGCC 5 cut(s) 387, 402, 503, 635, 923
Bsp1286I GDGCHC 1 cut(s) 811
Bsp1407I TGTACA 1 cut(s) 40
Bsp143I GATC 2 cut(s) 130, 745
BspACI CCGC 4 cut(s) 267, 273, 540, 657
BspANI GGCC 5 cut(s) 387, 402, 503, 635, 923
BspCNI CTCAG 1 cut(s) 587
BspLI GGNNCC 1 cut(s) 580
BspMAI CTGCAG 1 cut(s) 529
BsrBI CCGCTC 1 cut(s) 275
BsrGI TGTACA 1 cut(s) 40
BsrI ACTGG 2 cut(s) 642, 836
BssMI GATC 2 cut(s) 130, 745
Bst4CI ACNGT 5 cut(s) 45, 205, 706, 757, 806
Bst6I CTCTTC 1 cut(s) 878
BstAPI GCANNNNNTGC 1 cut(s) 625
BstAUI TGTACA 1 cut(s) 40
BstC8I GCNNGC 4 cut(s) 106, 110, 735, 899
BstDEI CTNAG 2 cut(s) 574, 612
BstEII GGTNACC 1 cut(s) 845
BstF5I GGATG 2 cut(s) 282, 388
BstKTI GATC 2 cut(s) 133, 748
BstMBI GATC 2 cut(s) 130, 745
BstMWI GCNNNNNNNGC 5 cut(s) 530, 539, 545, 625, 734
BstPI GGTNACC 1 cut(s) 845
BstSFI CTRYAG 2 cut(s) 204, 525
BstSLI GKGCMC 1 cut(s) 811
BstV1I GCAGC 4 cut(s) 130, 199, 511, 612
BsuRI GGCC 5 cut(s) 387, 402, 503, 635, 923
BtsCI GGATG 2 cut(s) 282, 388
BtsIMutI CAGTG 4 cut(s) 192, 325, 649, 811
Cac8I GCNNGC 4 cut(s) 106, 110, 735, 899
CaiI CAGNNNCTG 2 cut(s) 625, 791
Cfr13I GGNCC 4 cut(s) 502, 578, 633, 695
CseI GACGC 1 cut(s) 110
Csp6I GTAC 2 cut(s) 41, 550
CviAII CATG 3 cut(s) 279, 715, 749
CviQI GTAC 2 cut(s) 41, 550
DdeI CTNAG 2 cut(s) 574, 612
DpnI GATC 2 cut(s) 132, 747
DpnII GATC 2 cut(s) 130, 745
DriI GACNNNNNGTC 1 cut(s) 248
Eam1104I CTCTTC 1 cut(s) 878
Eam1105I GACNNNNNGTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 878
Eco47I GGWCC 2 cut(s) 578, 695
Eco57I CTGAAG 2 cut(s) 216, 813
Eco91I GGTNACC 1 cut(s) 845
EcoO109I RGGNCCY 2 cut(s) 502, 578
EcoO65I GGTNACC 1 cut(s) 845
EcoT22I ATGCAT 1 cut(s) 284
FaeI CATG 3 cut(s) 282, 718, 752
FalI AAGNNNNNCTT 2 cut(s) 418, 450
FaqI GGGAC 2 cut(s) 214, 564
FatI CATG 3 cut(s) 278, 714, 748
FauI CCCGC 2 cut(s) 274, 664
FbaI TGATCA 1 cut(s) 130
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 5 cut(s) 144, 213, 525, 540, 626
FokI GGATG 2 cut(s) 269, 395
Fsp4HI GCNGC 5 cut(s) 144, 213, 525, 540, 626
FspBI CTAG 2 cut(s) 351, 404
GluI GCNGC 5 cut(s) 144, 213, 525, 540, 626
GsuI CTGGAG 3 cut(s) 400, 480, 853
HaeIII GGCC 5 cut(s) 387, 402, 503, 635, 923
HgaI GACGC 1 cut(s) 110
Hin1II CATG 3 cut(s) 282, 718, 752
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 6 cut(s) 119, 262, 331, 652, 773, 872
HphI GGTGA 2 cut(s) 97, 610
Hpy166II GTNNAC 3 cut(s) 253, 457, 871
Hpy188I TCNGA 1 cut(s) 787
Hpy188III TCNNGA 7 cut(s) 98, 240, 417, 497, 649, 698, 880
Hpy8I GTNNAC 3 cut(s) 253, 457, 871
HpyCH4III ACNGT 5 cut(s) 45, 205, 706, 757, 806
HpyCH4V TGCA 8 cut(s) 30, 68, 108, 215, 282, 527, 733, 913
HpyF10VI GCNNNNNNNGC 5 cut(s) 530, 539, 545, 625, 734
HpyF3I CTNAG 2 cut(s) 574, 612
Hsp92II CATG 3 cut(s) 282, 718, 752
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 2 cut(s) 130, 745
LmnI GCTCC 3 cut(s) 280, 688, 834
Lsp1109I GCAGC 4 cut(s) 130, 199, 511, 612
LweI GCATC 5 cut(s) 130, 291, 324, 361, 826
MaeI CTAG 2 cut(s) 351, 404
MaeIII GTNAC 5 cut(s) 7, 222, 328, 421, 845
MalI GATC 2 cut(s) 132, 747
MbiI CCGCTC 1 cut(s) 275
MboI GATC 2 cut(s) 130, 745
MboII GAAGA 3 cut(s) 577, 613, 895
MfeI CAATTG 1 cut(s) 768
MhlI GDGCHC 1 cut(s) 811
MluCI AATT 6 cut(s) 15, 24, 569, 768, 825, 935
MlyI GAGTC 3 cut(s) 128, 325, 866
Mph1103I ATGCAT 1 cut(s) 284
MroXI GAANNNNTTC 2 cut(s) 569, 757
MseI TTAA 4 cut(s) 18, 258, 294, 933
MunI CAATTG 1 cut(s) 768
MwoI GCNNNNNNNGC 5 cut(s) 530, 539, 545, 625, 734
NdeII GATC 2 cut(s) 130, 745
NlaIII CATG 3 cut(s) 282, 718, 752
NlaIV GGNNCC 1 cut(s) 580
NmuCI GTSAC 1 cut(s) 328
NsiI ATGCAT 1 cut(s) 284
PdmI GAANNNNTTC 2 cut(s) 569, 757
PfeI GAWTC 3 cut(s) 262, 652, 773
PkrI GCNGC 5 cut(s) 145, 214, 526, 541, 627
PleI GAGTC 3 cut(s) 127, 325, 866
PpsI GAGTC 3 cut(s) 127, 325, 866
PpuMI RGGWCCY 1 cut(s) 578
PshBI ATTAAT 1 cut(s) 18
Psp5II RGGWCCY 1 cut(s) 578
PspEI GGTNACC 1 cut(s) 845
PspN4I GGNNCC 1 cut(s) 580
PspPI GGNCC 4 cut(s) 502, 578, 633, 695
PspPPI RGGWCCY 1 cut(s) 578
PstI CTGCAG 1 cut(s) 529
PstNI CAGNNNCTG 2 cut(s) 625, 791
RsaI GTAC 2 cut(s) 42, 551
RsaNI GTAC 2 cut(s) 41, 550
SaqAI TTAA 4 cut(s) 18, 258, 294, 933
SatI GCNGC 5 cut(s) 144, 213, 525, 540, 626
Sau3AI GATC 2 cut(s) 130, 745
Sau96I GGNCC 4 cut(s) 502, 578, 633, 695
SchI GAGTC 3 cut(s) 128, 325, 866
SduI GDGCHC 1 cut(s) 811
SetI ASST 7 cut(s) 114, 414, 513, 535, 580, 730, 839
SfaNI GCATC 5 cut(s) 130, 291, 324, 361, 826
SfcI CTRYAG 2 cut(s) 204, 525
SinI GGWCC 2 cut(s) 578, 695
SmlI CTYRAG 3 cut(s) 389, 534, 812
SmoI CTYRAG 3 cut(s) 389, 534, 812
Sse9I AATT 6 cut(s) 15, 24, 569, 768, 825, 935
SsiI CCGC 4 cut(s) 267, 273, 540, 657
SspMI CTAG 2 cut(s) 351, 404
TaaI ACNGT 5 cut(s) 45, 205, 706, 757, 806
TaqI TCGA 3 cut(s) 514, 744, 855
TasI AATT 6 cut(s) 15, 24, 569, 768, 825, 935
TatI WGTACW 1 cut(s) 40
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 3 cut(s) 262, 652, 773
Tru1I TTAA 4 cut(s) 18, 258, 294, 933
Tru9I TTAA 4 cut(s) 18, 258, 294, 933
TscAI CASTG 4 cut(s) 199, 325, 649, 811
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 4 cut(s) 143, 212, 524, 625
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 1 cut(s) 36
TspRI CASTG 4 cut(s) 199, 325, 649, 811
VpaK11BI GGWCC 2 cut(s) 578, 695
VspI ATTAAT 1 cut(s) 18
XapI RAATTY 2 cut(s) 24, 569
XmiI GTMKAC 1 cut(s) 252
XmnI GAANNNNTTC 2 cut(s) 569, 757
XspI CTAG 2 cut(s) 351, 404
Zsp2I ATGCAT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.