FvH4_4g22560

Transaldolase/Fructose-6-phosphate aldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011006
Physical Location & Seq
Reverse (-)
25336552 .. 25341636
5085 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g22560.t2

Sequence Viewer

Length: 1332 bp
ATGGGTTCCATTTCCAAGCTCTCCCATCCCTGCCCTGCTTCCTCTCTCTCCTCTACCTTCAACAACCCCAAAGCTTCCAACCCCAAGTGCTTGATCGGCCTCCTCACGACCTCCAACAACACCTTCACCTCCAAGCTCTCCTCTTCCAAGCTCTCCCTACGAAGCAAGCCCTCACTCAGAGGCTCCTTGATAGTGAGATGTGCTCAGGGTGAAGGTAATGGAAGCCCCACAAAGAAGACTTATCTCCATGATCTTTATGACAAGGAAGGACAGAGTCCATGGTATGATAACCTCTGCAGACCAGTCACAGATCTGCTTCCGCTCATTGCTAGTGGTGTTAGAGGTGTTACTAGTAACCCAGCGATTTTCCAGAAGGCAATATCAACTTCGAATGCTTACAATGATCAATTCAGGGAGCTCGTACAGTCAGGCAAAGACATTGAAACTGCATATTGGGAACTTGTGGTGAAGGACATTCAAGACGCGTCCAAGCTTTTTGAGTCGATCTATGATCAAACTGATGCTGCTGATGGCTATGTGTCTGTTGAAGTTTCTCCCAGACTTGCTGATGACACTGAAGGGACTGTGGAGGCTGCAAAATGGCTACACAAAGTTGTTTCCCGGCCCAATGTCTACATTAAGATTCCCGCTACTGCTCCATGCATCCCTTCTATTAAGGAAGTTATAGCAAATGGCATAAGTGTCAATGTGACTCTTATATTCTCTCTCAGTAGATATGAGGCAGTCATTGATGCGTATTTGGATGGCCTTGAGGCTTCCGGCCTAAATGACCTCTCCAGAGTCACAAGTGTTGCTTCCTTCTTTGTCAGTAGGGTTGACACCCTTATTGACAAGTTGCTTGAAAAGATTGGAACTCCAGAGGCCCTTGACCTTCGAGGAAAGGCTGCAGTAGCTCAAGCCGCTTTAGCGTACCAACTATACCAGAAGAAATTCTCGGGTCCCAGATGGGAGGCTTTGGTGAAGAAGGGTGCTAAGAAACAGAGGCTGCTGTGGGCCTCAACCAGTGTCAAGAATCCTGCCTACCCTGATACTTTATATGTCGCTCCTCTCATTGGTCCTGACACGGTATCAACCATGCCAGACCAAGCTCTGCAAGCCTTCCTTGATCATGGAACTGTTTCAAGGACAATTGATTCCAATGTATCAGAGGCTGAAGGCATCTACAGTGCACTTGAGCATCTTGGAATTGACTGGAGCTATGTCGGTGACCAACTCGAACTTGAAGGAGTGGACTCTTTCAAGAAGAGTTTCGACAGCCTGCTTGATACGCTGCAAGAGAAGGCCAACTCTCTTAAATTGGTTAGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

444

Amino Acids

48.17

Weight (kDa)

5.86

Isoelectric Point (pI)

25.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAL_FSA PF00923 108 - 430 4.8e-78 Transaldolase/Fructose-6-phosphate aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13420
fragaria_vesca FvH4_4g22560 FvH4_4g22560 FvH4_4g22560
malus_domestica MD13G1131400.v1.1 MD16G1141700.v1.1
prunus_persica Prupe.1G214200_v2.0.a1 Prupe.1G214200_v2.0.a1
pyrus_communis pycom13g11470 pycom16g11220
rosa_chinensis RchiOBHm_Chr4g0428801
rosa_laevigata RLG00000007124
rosa_multiflora Rmu_ssc0000273.1_g000001
rosa_roxburghii Rroxscaffold_5G00370480
rosa_rugosa Rorug04G0229100 Rorug04G0229100
rosa_samantha Rh4AG286000 Rh4BG291800 Rh4CG307800
rosa_wichuraiana Rw4G024790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 322
AccI GTMKAC 1 cut(s) 633
AccII CGCG 1 cut(s) 485
AciI CCGC 3 cut(s) 320, 648, 921
AcsI RAATTY 1 cut(s) 950
AcuI CTGAAG 2 cut(s) 597, 1194
AfaI GTAC 2 cut(s) 423, 932
AfiI CCNNNNNNNGG 1 cut(s) 1073
AflIII ACRYGT 1 cut(s) 483
AgsI TTSAA 8 cut(s) 61, 443, 479, 548, 863, 1143, 1244, 1261
AhlI ACTAGT 1 cut(s) 350
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 9 cut(s) 19, 74, 136, 151, 418, 493, 914, 1109, 1218
AluI AGCT 9 cut(s) 19, 74, 136, 151, 418, 493, 914, 1109, 1218
Alw21I GWGCWC 3 cut(s) 205, 420, 1192
Alw44I GTGCAC 1 cut(s) 1188
AlwNI CAGNNNCTG 2 cut(s) 1006, 1172
Ama87I CYCGRG 1 cut(s) 955
AoxI GGCC 7 cut(s) 97, 623, 766, 781, 882, 1014, 1302
ApaLI GTGCAC 1 cut(s) 1188
ApeKI GCWGC 5 cut(s) 524, 593, 905, 1006, 1291
ApoI RAATTY 1 cut(s) 950
Asp700I GAANNNNTTC 3 cut(s) 950, 1138, 1268
AspS9I GGNCC 5 cut(s) 624, 883, 959, 1014, 1076
AsuC2I CCSGG 1 cut(s) 622
AsuHPI GGTGA 5 cut(s) 118, 221, 478, 991, 1238
AsuII TTCGAA 1 cut(s) 389
AvaI CYCGRG 1 cut(s) 955
AvaII GGWCC 2 cut(s) 959, 1076
BaeGI GKGCMC 1 cut(s) 1192
BanII GRGCYC 1 cut(s) 420
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 3 cut(s) 205, 420, 1192
BbvI GCAGC 5 cut(s) 511, 580, 892, 993, 1278
BccI CCATC 4 cut(s) 33, 524, 758, 960
BclI TGATCA 3 cut(s) 403, 511, 1126
BcnI CCSGG 1 cut(s) 622
BcuI ACTAGT 1 cut(s) 350
BfaI CTAG 2 cut(s) 330, 351
BfmI CTRYAG 3 cut(s) 295, 906, 1183
BglII AGATCT 1 cut(s) 310
BisI GCNGC 6 cut(s) 525, 594, 906, 921, 1007, 1292
BlsI GCNGC 6 cut(s) 526, 595, 907, 922, 1008, 1293
Bme1390I CCNGG 1 cut(s) 622
Bme18I GGWCC 2 cut(s) 959, 1076
BmeT110I CYCGRG 1 cut(s) 955
BmgT120I GGNCC 5 cut(s) 624, 883, 959, 1014, 1076
BmiI GGNNCC 4 cut(s) 7, 184, 960, 961
BmrFI CCNGG 1 cut(s) 622
BmsI GCATC 5 cut(s) 511, 672, 742, 1188, 1207
BpiI GAAGAC 1 cut(s) 242
BplI GAGNNNNNCTC 2 cut(s) 187, 219
BpmI CTGGAG 3 cut(s) 781, 861, 1234
Bpu10I CCTNAGC 1 cut(s) 204
Bpu14I TTCGAA 1 cut(s) 389
BpuEI CTTGAG 3 cut(s) 791, 900, 1214
BpuMI CCSGG 1 cut(s) 622
BsaJI CCNNGG 1 cut(s) 278
Bsc4I CCNNNNNNNGG 1 cut(s) 1073
Bse1I ACTGG 3 cut(s) 302, 1023, 1217
Bse3DI GCAATG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 278
BseGI GGATG 3 cut(s) 25, 663, 769
BseLI CCNNNNNNNGG 1 cut(s) 1073
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 3 cut(s) 190, 218, 742
BseNI ACTGG 3 cut(s) 302, 1023, 1217
BseRI GAGGAG 4 cut(s) 40, 92, 130, 1056
BseSI GKGCMC 1 cut(s) 1192
BseXI GCAGC 5 cut(s) 511, 580, 892, 993, 1278
BseYI CCCAGC 1 cut(s) 358
Bsh1236I CGCG 1 cut(s) 485
BshFI GGCC 7 cut(s) 99, 625, 768, 783, 884, 1016, 1304
BsiHKAI GWGCWC 3 cut(s) 205, 420, 1192
BsiHKCI CYCGRG 1 cut(s) 955
BsiSI CCGG 2 cut(s) 622, 780
BslFI GGGAC 2 cut(s) 595, 945
BslI CCNNNNNNNGG 1 cut(s) 1073
BsmFI GGGAC 2 cut(s) 595, 945
BsmI GAATGC 1 cut(s) 397
BsnI GGCC 7 cut(s) 99, 625, 768, 783, 884, 1016, 1304
BsoBI CYCGRG 1 cut(s) 955
Bsp119I TTCGAA 1 cut(s) 389
Bsp1286I GDGCHC 3 cut(s) 205, 420, 1192
Bsp143I GATC 7 cut(s) 93, 250, 310, 403, 504, 511, 1126
Bsp19I CCATGG 1 cut(s) 278
BspACI CCGC 3 cut(s) 320, 648, 921
BspANI GGCC 7 cut(s) 99, 625, 768, 783, 884, 1016, 1304
BspCNI CTCAG 3 cut(s) 189, 217, 741
BspFNI CGCG 1 cut(s) 485
BspLI GGNNCC 4 cut(s) 7, 184, 960, 961
BspMAI CTGCAG 2 cut(s) 299, 910
BspT104I TTCGAA 1 cut(s) 389
BsrBI CCGCTC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 324
BsrI ACTGG 3 cut(s) 302, 1023, 1217
BssECI CCNNGG 1 cut(s) 278
BssMI GATC 7 cut(s) 93, 250, 310, 403, 504, 511, 1126
BssT1I CCWWGG 1 cut(s) 278
Bst4CI ACNGT 5 cut(s) 426, 586, 1087, 1138, 1187
Bst6I CTCTTC 2 cut(s) 148, 1259
BstBI TTCGAA 1 cut(s) 389
BstC8I GCNNGC 3 cut(s) 167, 1116, 1280
BstDEI CTNAG 4 cut(s) 176, 204, 728, 993
BstDSI CCRYGG 1 cut(s) 278
BstEII GGTNACC 1 cut(s) 1226
BstF5I GGATG 3 cut(s) 25, 663, 769
BstFNI CGCG 1 cut(s) 485
BstKTI GATC 7 cut(s) 96, 253, 313, 406, 507, 514, 1129
BstMBI GATC 7 cut(s) 93, 250, 310, 403, 504, 511, 1126
BstMWI GCNNNNNNNGC 6 cut(s) 96, 911, 920, 926, 1115, 1288
BstPI GGTNACC 1 cut(s) 1226
BstSCI CCNGG 1 cut(s) 620
BstSFI CTRYAG 3 cut(s) 295, 906, 1183
BstSLI GKGCMC 1 cut(s) 1192
BstUI CGCG 1 cut(s) 485
BstV1I GCAGC 5 cut(s) 511, 580, 892, 993, 1278
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuRI GGCC 7 cut(s) 99, 625, 768, 783, 884, 1016, 1304
BtgI CCRYGG 1 cut(s) 278
BtsCI GGATG 3 cut(s) 25, 663, 769
BtsIMutI CAGTG 3 cut(s) 573, 1030, 1192
Cac8I GCNNGC 3 cut(s) 167, 1116, 1280
CaiI CAGNNNCTG 2 cut(s) 1006, 1172
Cfr13I GGNCC 5 cut(s) 624, 883, 959, 1014, 1076
CseI GACGC 2 cut(s) 474, 491
Csp6I GTAC 2 cut(s) 422, 931
CviAII CATG 5 cut(s) 248, 279, 660, 1096, 1130
CviQI GTAC 2 cut(s) 422, 931
DdeI CTNAG 4 cut(s) 176, 204, 728, 993
DpnI GATC 7 cut(s) 95, 252, 312, 405, 506, 513, 1128
DpnII GATC 7 cut(s) 93, 250, 310, 403, 504, 511, 1126
Eam1104I CTCTTC 2 cut(s) 148, 1259
EarI CTCTTC 2 cut(s) 148, 1259
Ecl136II GAGCTC 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 278
Eco24I GRGCYC 1 cut(s) 420
Eco47I GGWCC 2 cut(s) 959, 1076
Eco53kI GAGCTC 1 cut(s) 418
Eco57I CTGAAG 2 cut(s) 597, 1194
Eco88I CYCGRG 1 cut(s) 955
Eco91I GGTNACC 1 cut(s) 1226
EcoICRI GAGCTC 1 cut(s) 418
EcoO109I RGGNCCY 2 cut(s) 883, 959
EcoO65I GGTNACC 1 cut(s) 1226
EcoT14I CCWWGG 1 cut(s) 278
EcoT22I ATGCAT 1 cut(s) 665
EcoT38I GRGCYC 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 278
FaeI CATG 5 cut(s) 251, 282, 663, 1099, 1133
FalI AAGNNNNNCTT 4 cut(s) 799, 831, 1107, 1139
FaqI GGGAC 2 cut(s) 595, 945
FatI CATG 5 cut(s) 247, 278, 659, 1095, 1129
FauI CCCGC 1 cut(s) 655
FbaI TGATCA 3 cut(s) 403, 511, 1126
FblI GTMKAC 1 cut(s) 633
Fnu4HI GCNGC 6 cut(s) 525, 594, 906, 921, 1007, 1292
FokI GGATG 3 cut(s) 12, 650, 776
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 6 cut(s) 525, 594, 906, 921, 1007, 1292
FspBI CTAG 2 cut(s) 330, 351
GluI GCNGC 6 cut(s) 525, 594, 906, 921, 1007, 1292
GsaI CCCAGC 1 cut(s) 362
GsuI CTGGAG 3 cut(s) 781, 861, 1234
HaeIII GGCC 7 cut(s) 99, 625, 768, 783, 884, 1016, 1304
HapII CCGG 2 cut(s) 622, 780
HgaI GACGC 2 cut(s) 474, 491
Hin1II CATG 5 cut(s) 251, 282, 663, 1099, 1133
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HindIII AAGCTT 2 cut(s) 72, 491
HinfI GANTC 8 cut(s) 274, 500, 643, 712, 801, 1033, 1154, 1253
HpaII CCGG 2 cut(s) 622, 780
HphI GGTGA 5 cut(s) 118, 221, 478, 991, 1238
Hpy166II GTNNAC 4 cut(s) 634, 838, 1190, 1252
Hpy188I TCNGA 2 cut(s) 179, 1168
Hpy188III TCNNGA 8 cut(s) 106, 370, 479, 798, 878, 1030, 1079, 1261
Hpy8I GTNNAC 4 cut(s) 634, 838, 1190, 1252
HpyCH4III ACNGT 5 cut(s) 426, 586, 1087, 1138, 1187
HpyCH4V TGCA 8 cut(s) 297, 449, 596, 663, 908, 1114, 1190, 1294
HpyF10VI GCNNNNNNNGC 6 cut(s) 96, 911, 920, 926, 1115, 1288
HpyF3I CTNAG 4 cut(s) 176, 204, 728, 993
Hsp92II CATG 5 cut(s) 251, 282, 663, 1099, 1133
KflI GGGWCCC 1 cut(s) 959
Ksp22I TGATCA 3 cut(s) 403, 511, 1126
Kzo9I GATC 7 cut(s) 93, 250, 310, 403, 504, 511, 1126
LmnI GCTCC 5 cut(s) 188, 415, 661, 1069, 1215
Lsp1109I GCAGC 5 cut(s) 511, 580, 892, 993, 1278
LweI GCATC 5 cut(s) 511, 672, 742, 1188, 1207
MaeI CTAG 2 cut(s) 330, 351
MaeIII GTNAC 6 cut(s) 304, 346, 353, 709, 802, 1226
MalI GATC 7 cut(s) 95, 252, 312, 405, 506, 513, 1128
MbiI CCGCTC 1 cut(s) 322
MboI GATC 7 cut(s) 93, 250, 310, 403, 504, 511, 1126
MboII GAAGA 5 cut(s) 135, 247, 958, 994, 1276
MfeI CAATTG 1 cut(s) 1149
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 3 cut(s) 205, 420, 1192
MluCI AATT 5 cut(s) 407, 950, 1149, 1206, 1316
MluI ACGCGT 1 cut(s) 483
MlyI GAGTC 5 cut(s) 283, 509, 706, 810, 1247
MmeI TCCRAC 2 cut(s) 102, 138
Mph1103I ATGCAT 1 cut(s) 665
MroXI GAANNNNTTC 3 cut(s) 950, 1138, 1268
MseI TTAA 3 cut(s) 639, 675, 1314
MspI CCGG 2 cut(s) 622, 780
MspR9I CCNGG 1 cut(s) 622
MunI CAATTG 1 cut(s) 1149
Mva1269I GAATGC 1 cut(s) 397
MvnI CGCG 1 cut(s) 485
MwoI GCNNNNNNNGC 6 cut(s) 96, 911, 920, 926, 1115, 1288
NciI CCSGG 1 cut(s) 622
NcoI CCATGG 1 cut(s) 278
NdeII GATC 7 cut(s) 93, 250, 310, 403, 504, 511, 1126
NlaIII CATG 5 cut(s) 251, 282, 663, 1099, 1133
NlaIV GGNNCC 4 cut(s) 7, 184, 960, 961
NmuCI GTSAC 4 cut(s) 304, 709, 802, 1226
NsiI ATGCAT 1 cut(s) 665
NspV TTCGAA 1 cut(s) 389
PctI GAATGC 1 cut(s) 397
PdmI GAANNNNTTC 3 cut(s) 950, 1138, 1268
PfeI GAWTC 3 cut(s) 643, 1033, 1154
PflFI GACNNNGTC 1 cut(s) 273
PkrI GCNGC 6 cut(s) 526, 595, 907, 922, 1008, 1293
PleI GAGTC 5 cut(s) 282, 508, 706, 809, 1247
PpsI GAGTC 5 cut(s) 282, 508, 706, 809, 1247
PpuMI RGGWCCY 1 cut(s) 959
Psp124BI GAGCTC 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 959
PspEI GGTNACC 1 cut(s) 1226
PspFI CCCAGC 1 cut(s) 358
PspN4I GGNNCC 4 cut(s) 7, 184, 960, 961
PspPI GGNCC 5 cut(s) 624, 883, 959, 1014, 1076
PspPPI RGGWCCY 1 cut(s) 959
PstI CTGCAG 2 cut(s) 299, 910
PstNI CAGNNNCTG 2 cut(s) 1006, 1172
PsuI RGATCY 1 cut(s) 310
PsyI GACNNNGTC 1 cut(s) 273
RsaI GTAC 2 cut(s) 423, 932
RsaNI GTAC 2 cut(s) 422, 931
SacI GAGCTC 1 cut(s) 420
SaqAI TTAA 3 cut(s) 639, 675, 1314
SatI GCNGC 6 cut(s) 525, 594, 906, 921, 1007, 1292
Sau3AI GATC 7 cut(s) 93, 250, 310, 403, 504, 511, 1126
Sau96I GGNCC 5 cut(s) 624, 883, 959, 1014, 1076
SchI GAGTC 5 cut(s) 283, 509, 706, 810, 1247
ScrFI CCNGG 1 cut(s) 622
SduI GDGCHC 3 cut(s) 205, 420, 1192
SfaNI GCATC 5 cut(s) 511, 672, 742, 1188, 1207
SfcI CTRYAG 3 cut(s) 295, 906, 1183
SfuI TTCGAA 1 cut(s) 389
SinI GGWCC 2 cut(s) 959, 1076
SmlI CTYRAG 3 cut(s) 770, 915, 1193
SmoI CTYRAG 3 cut(s) 770, 915, 1193
SpeI ACTAGT 1 cut(s) 350
Sse9I AATT 5 cut(s) 407, 950, 1149, 1206, 1316
SsiI CCGC 3 cut(s) 320, 648, 921
SspMI CTAG 2 cut(s) 330, 351
SstI GAGCTC 1 cut(s) 420
StyD4I CCNGG 1 cut(s) 620
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 5 cut(s) 426, 586, 1087, 1138, 1187
TaqI TCGA 5 cut(s) 389, 503, 895, 1236, 1272
TasI AATT 5 cut(s) 407, 950, 1149, 1206, 1316
TauI GCSGC 1 cut(s) 923
TfiI GAWTC 3 cut(s) 643, 1033, 1154
Tru1I TTAA 3 cut(s) 639, 675, 1314
Tru9I TTAA 3 cut(s) 639, 675, 1314
TscAI CASTG 3 cut(s) 580, 1030, 1192
TseFI GTSAC 4 cut(s) 304, 709, 802, 1226
TseI GCWGC 5 cut(s) 524, 593, 905, 1006, 1291
Tsp45I GTSAC 4 cut(s) 304, 709, 802, 1226
TspRI CASTG 3 cut(s) 580, 1030, 1192
Tth111I GACNNNGTC 1 cut(s) 273
VneI GTGCAC 1 cut(s) 1188
VpaK11BI GGWCC 2 cut(s) 959, 1076
XapI RAATTY 1 cut(s) 950
XmiI GTMKAC 1 cut(s) 633
XmnI GAANNNNTTC 3 cut(s) 950, 1138, 1268
XspI CTAG 2 cut(s) 330, 351
Zsp2I ATGCAT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.