pycom13g11470

Transaldolase/Fructose-6-phosphate aldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0011006
Physical Location & Seq
Forward (+)
7880470 .. 7883455
2986 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g11470.3

Sequence Viewer

Length: 1329 bp
ATGGCTTCCATTTCCAAGCTCTCCAATCCCACCCCCGCTTCCTCCTTTTCCTCCACCTTCAGCCCGAGAACGCCGCAGCCCAAGTGTTTGATCCGCCTCCTCGCCACCCCCGCCGCCACTTTCAACTCCAAACTCTCCTCCTCCAAGCTCTCCGTACGAACCAAGCTCTCTCTCCGGGGATCTCTGGTGGTGAGGTGTTCTCAGAGTGATGGGAATGGAAATCCGGTGAAGAGAACTTATCTCCATGATCTGTATGAGAAGGAGGGACAGAGTCCGTGGTATGATAACCTCTGCCGGCCTGTGACGGATCTGCTTCCGCTTATCGCAAGCGGGGTTCGAGGTGTAACCAGTAACCCAGCGATTTTCCAGAAAGCAATCTCAACTTCAAATGCTTACAATGACCAATTCAGGGAACTTGTACAGTCAGGAAAAGACATTGAAAGTGCATATTGGGAACTTGTGGTGAAGGACATTCAAGATGCTTGCAAACTTTTTGAGGCTATCTATGATCAAACTGATGCTGGTGATGGTTACGTTTCTGTTGAAGTTTCTCCCCGACTTGCTGATGACACCCAAGGGACTGTGGATGCTGCAAAATGGCTTCATAAAGTAGTTGCCCGTCCTAATGTCTACATAAAAATTCCTGCCACTGCTCCATGCGTTCCTTCAATTAAGGAAGTTATAGCAAATGGCATAAGTGTCAATGTGACTCTTATATTCTCGCTCAGTAGATATGAGGAGGTGATTGATGCTTACTTGGATGGCCTTGAGGCTTCTGGACTAGGCGACCTCTCCAGAGTCACAAGTGTTGCTTCCTTCTTTGTCAGTAGGGTGGACACCCTCATTGACAAGTTGCTTGAAAAGATTGGAACTCCAGAGGCCCTTGACCTTCGAGGAAAGGCTGCAGTAGCTCAAGCTGCTTTGGCATACCAACTCTACCAAAAGAAATTCTCTGGCCCTAGATGGGAGGCTTTGGTGAAAAAAGGTGCTAAGAAGCAGAGGCTGCTTTGGGCCTCAACCAGCGTCAAGAATCCTGCCTACCCCGATACTTTATATGTTGCTCCTCTCATAGGCCCTGACACGGTTTCAACCATGCCAGACCAAGCTCTTCAAGCATTTGTCGACCATGGCACAGTTTCAAGGACAATTGATTCCAATGTATCCGAAGCTGAAGGCATTTACAGTGCACTGGAGAAGGTAGGTATCGACTGGAGCTACGTTGGGAACCAACTCGAACTTGAGGGAGTGGATTCTTTCAAGAAGAGTTTCGACAGCCTGCTAGACACCCTGCAAGAGAAGGCCAACTCTCTTAAATTGGTTAGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

443

Amino Acids

48.15

Weight (kDa)

6.38

Isoelectric Point (pI)

27.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13420
fragaria_vesca FvH4_4g22560 FvH4_4g22560 FvH4_4g22560
malus_domestica MD13G1131400.v1.1 MD16G1141700.v1.1
prunus_persica Prupe.1G214200_v2.0.a1 Prupe.1G214200_v2.0.a1
pyrus_communis pycom13g11470 pycom16g11220
rosa_chinensis RchiOBHm_Chr4g0428801
rosa_laevigata RLG00000007124
rosa_multiflora Rmu_ssc0000273.1_g000001
rosa_roxburghii Rroxscaffold_5G00370480
rosa_rugosa Rorug04G0229100 Rorug04G0229100
rosa_samantha Rh4AG286000 Rh4BG291800 Rh4CG307800
rosa_wichuraiana Rw4G024790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 630, 1122
AciI CCGC 7 cut(s) 36, 74, 94, 111, 114, 317, 330
AclWI GGATC 3 cut(s) 85, 187, 315
AcsI RAATTY 2 cut(s) 639, 947
AcuI CTGAAG 2 cut(s) 43, 1191
AfaI GTAC 2 cut(s) 156, 420
AfiI CCNNNNNNNGG 4 cut(s) 409, 964, 1070, 1081
AluBI AGCT 8 cut(s) 19, 148, 166, 911, 917, 1106, 1169, 1215
AluI AGCT 8 cut(s) 19, 148, 166, 911, 917, 1106, 1169, 1215
Alw21I GWGCWC 1 cut(s) 1189
Alw44I GTGCAC 1 cut(s) 1185
AlwI GGATC 3 cut(s) 85, 187, 315
AlwNI CAGNNNCTG 1 cut(s) 1003
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 7 cut(s) 296, 763, 879, 955, 1011, 1072, 1299
ApaLI GTGCAC 1 cut(s) 1185
ApeKI GCWGC 5 cut(s) 76, 590, 902, 917, 1003
ApoI RAATTY 2 cut(s) 639, 947
Asp700I GAANNNNTTC 1 cut(s) 1265
AspS9I GGNCC 4 cut(s) 880, 956, 1011, 1073
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 6 cut(s) 202, 238, 475, 536, 754, 988
AvaI CYCGRG 1 cut(s) 64
BaeGI GKGCMC 1 cut(s) 1189
Bbv12I GWGCWC 1 cut(s) 1189
BbvI GCAGC 5 cut(s) 88, 577, 889, 904, 990
BccI CCATC 4 cut(s) 203, 521, 755, 957
BciVI GTATCC 1 cut(s) 1171
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 1 cut(s) 176
BfaI CTAG 3 cut(s) 782, 960, 1280
BfmI CTRYAG 1 cut(s) 903
BfuI GTATCC 1 cut(s) 1171
BisI GCNGC 7 cut(s) 74, 77, 114, 591, 903, 918, 1004
BlsI GCNGC 7 cut(s) 75, 78, 115, 592, 904, 919, 1005
Bme1390I CCNGG 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 4 cut(s) 880, 956, 1011, 1073
BmiI GGNNCC 1 cut(s) 1226
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 4 cut(s) 469, 508, 577, 739
BplI GAGNNNNNCTC 2 cut(s) 184, 216
BpmI CTGGAG 4 cut(s) 778, 858, 1211, 1231
BpuEI CTTGAG 3 cut(s) 788, 897, 1259
BpuMI CCSGG 1 cut(s) 176
BsaJI CCNNGG 4 cut(s) 175, 275, 574, 1126
BsaWI WCCGGW 1 cut(s) 223
Bsc4I CCNNNNNNNGG 4 cut(s) 409, 964, 1070, 1081
Bse118I RCCGGY 1 cut(s) 294
Bse1I ACTGG 3 cut(s) 348, 1194, 1214
BseDI CCNNGG 4 cut(s) 175, 275, 574, 1126
BseGI GGATG 2 cut(s) 592, 766
BseLI CCNNNNNNNGG 4 cut(s) 409, 964, 1070, 1081
BseMII CTCAG 2 cut(s) 215, 739
BseNI ACTGG 3 cut(s) 348, 1194, 1214
BseRI GAGGAG 5 cut(s) 89, 127, 130, 752, 1053
BseSI GKGCMC 1 cut(s) 1189
BseXI GCAGC 5 cut(s) 88, 577, 889, 904, 990
BseYI CCCAGC 1 cut(s) 355
BshFI GGCC 7 cut(s) 298, 765, 881, 957, 1013, 1074, 1301
BsiHKAI GWGCWC 1 cut(s) 1189
BsiHKCI CYCGRG 1 cut(s) 64
BsiSI CCGG 3 cut(s) 175, 224, 295
BsiWI CGTACG 1 cut(s) 154
BslFI GGGAC 2 cut(s) 279, 592
BslI CCNNNNNNNGG 4 cut(s) 409, 964, 1070, 1081
BsmFI GGGAC 2 cut(s) 279, 592
BsnI GGCC 7 cut(s) 298, 765, 881, 957, 1013, 1074, 1301
BsoBI CYCGRG 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 1189
Bsp1407I TGTACA 1 cut(s) 418
Bsp143I GATC 5 cut(s) 90, 179, 247, 307, 508
Bsp19I CCATGG 1 cut(s) 1126
BspACI CCGC 7 cut(s) 36, 74, 94, 111, 114, 317, 330
BspANI GGCC 7 cut(s) 298, 765, 881, 957, 1013, 1074, 1301
BspCNI CTCAG 2 cut(s) 214, 738
BspLI GGNNCC 1 cut(s) 1226
BspMAI CTGCAG 1 cut(s) 907
BspPI GGATC 3 cut(s) 85, 187, 315
BspQI GCTCTTC 1 cut(s) 1113
BsrFI RCCGGY 1 cut(s) 294
BsrGI TGTACA 1 cut(s) 418
BsrI ACTGG 3 cut(s) 348, 1194, 1214
BssAI RCCGGY 1 cut(s) 294
BssECI CCNNGG 4 cut(s) 175, 275, 574, 1126
BssMI GATC 5 cut(s) 90, 179, 247, 307, 508
BssT1I CCWWGG 2 cut(s) 574, 1126
Bst4CI ACNGT 5 cut(s) 423, 583, 1084, 1135, 1184
Bst6I CTCTTC 3 cut(s) 224, 1113, 1256
BstAPI GCANNNNNTGC 1 cut(s) 1003
BstAUI TGTACA 1 cut(s) 418
BstC8I GCNNGC 4 cut(s) 296, 328, 484, 1277
BstDEI CTNAG 3 cut(s) 201, 725, 990
BstDSI CCRYGG 2 cut(s) 275, 1126
BstENI CCTNNNNNAGG 1 cut(s) 1068
BstF5I GGATG 2 cut(s) 592, 766
BstKTI GATC 5 cut(s) 93, 182, 250, 310, 511
BstMBI GATC 5 cut(s) 90, 179, 247, 307, 508
BstMWI GCNNNNNNNGC 6 cut(s) 110, 908, 917, 923, 1003, 1112
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 903
BstSLI GKGCMC 1 cut(s) 1189
BstV1I GCAGC 5 cut(s) 88, 577, 889, 904, 990
BstX2I RGATCY 2 cut(s) 179, 307
BstYI RGATCY 2 cut(s) 179, 307
BsuI GTATCC 1 cut(s) 1171
BsuRI GGCC 7 cut(s) 298, 765, 881, 957, 1013, 1074, 1301
BtgI CCRYGG 2 cut(s) 275, 1126
BtsCI GGATG 2 cut(s) 592, 766
BtsI GCAGTG 1 cut(s) 648
BtsIMutI CAGTG 3 cut(s) 648, 1187, 1189
Cac8I GCNNGC 4 cut(s) 296, 328, 484, 1277
CaiI CAGNNNCTG 1 cut(s) 1003
Cfr10I RCCGGY 1 cut(s) 294
Cfr13I GGNCC 4 cut(s) 880, 956, 1011, 1073
CseI GACGC 1 cut(s) 1012
Csp6I GTAC 2 cut(s) 155, 419
CviAII CATG 4 cut(s) 245, 657, 1093, 1127
CviQI GTAC 2 cut(s) 155, 419
DdeI CTNAG 3 cut(s) 201, 725, 990
DpnI GATC 5 cut(s) 92, 181, 249, 309, 510
DpnII GATC 5 cut(s) 90, 179, 247, 307, 508
Eam1104I CTCTTC 3 cut(s) 224, 1113, 1256
EarI CTCTTC 3 cut(s) 224, 1113, 1256
EciI GGCGGA 1 cut(s) 83
Eco130I CCWWGG 2 cut(s) 574, 1126
Eco57I CTGAAG 2 cut(s) 43, 1191
Eco88I CYCGRG 1 cut(s) 64
EcoNI CCTNNNNNAGG 1 cut(s) 1068
EcoO109I RGGNCCY 2 cut(s) 880, 1073
EcoT14I CCWWGG 2 cut(s) 574, 1126
ErhI CCWWGG 2 cut(s) 574, 1126
FaeI CATG 4 cut(s) 248, 660, 1096, 1130
FalI AAGNNNNNCTT 2 cut(s) 796, 828
FaqI GGGAC 2 cut(s) 279, 592
FatI CATG 4 cut(s) 244, 656, 1092, 1126
FauI CCCGC 3 cut(s) 43, 118, 323
FbaI TGATCA 1 cut(s) 508
FblI GTMKAC 2 cut(s) 630, 1122
Fnu4HI GCNGC 7 cut(s) 74, 77, 114, 591, 903, 918, 1004
FokI GGATG 2 cut(s) 599, 773
Fsp4HI GCNGC 7 cut(s) 74, 77, 114, 591, 903, 918, 1004
FspBI CTAG 3 cut(s) 782, 960, 1280
GluI GCNGC 7 cut(s) 74, 77, 114, 591, 903, 918, 1004
GsaI CCCAGC 1 cut(s) 359
GsuI CTGGAG 4 cut(s) 778, 858, 1211, 1231
HaeIII GGCC 7 cut(s) 298, 765, 881, 957, 1013, 1074, 1301
HapII CCGG 3 cut(s) 175, 224, 295
HgaI GACGC 1 cut(s) 1012
Hin1II CATG 4 cut(s) 248, 660, 1096, 1130
HincII GTYRAC 1 cut(s) 1123
HindII GTYRAC 1 cut(s) 1123
HinfI GANTC 6 cut(s) 271, 709, 798, 1030, 1151, 1250
HpaII CCGG 3 cut(s) 175, 224, 295
HphI GGTGA 6 cut(s) 202, 238, 475, 536, 754, 988
Hpy166II GTNNAC 4 cut(s) 631, 835, 1123, 1187
Hpy188I TCNGA 2 cut(s) 204, 1165
Hpy188III TCNNGA 8 cut(s) 367, 426, 476, 777, 795, 875, 1027, 1258
Hpy8I GTNNAC 4 cut(s) 631, 835, 1123, 1187
HpyAV CCTTC 9 cut(s) 67, 253, 460, 675, 826, 899, 1166, 1189, 1291
HpyCH4III ACNGT 5 cut(s) 423, 583, 1084, 1135, 1184
HpyCH4IV ACGT 2 cut(s) 534, 1218
HpyCH4V TGCA 6 cut(s) 446, 486, 593, 905, 1187, 1291
HpyF10VI GCNNNNNNNGC 6 cut(s) 110, 908, 917, 923, 1003, 1112
HpyF3I CTNAG 3 cut(s) 201, 725, 990
HpySE526I ACGT 2 cut(s) 534, 1218
Hsp92II CATG 4 cut(s) 248, 660, 1096, 1130
KroI GCCGGC 1 cut(s) 294
KroNI GCCGGC 1 cut(s) 296
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 5 cut(s) 90, 179, 247, 307, 508
LguI GCTCTTC 1 cut(s) 1113
LmnI GCTCC 3 cut(s) 658, 1066, 1212
Lsp1109I GCAGC 5 cut(s) 88, 577, 889, 904, 990
LweI GCATC 4 cut(s) 469, 508, 577, 739
MaeI CTAG 3 cut(s) 782, 960, 1280
MaeII ACGT 2 cut(s) 534, 1218
MaeIII GTNAC 6 cut(s) 301, 343, 350, 530, 706, 799
MalI GATC 5 cut(s) 92, 181, 249, 309, 510
MboI GATC 5 cut(s) 90, 179, 247, 307, 508
MboII GAAGA 3 cut(s) 241, 1100, 1273
MfeI CAATTG 1 cut(s) 1146
MflI RGATCY 2 cut(s) 179, 307
MhlI GDGCHC 1 cut(s) 1189
MluCI AATT 6 cut(s) 404, 639, 669, 947, 1146, 1313
MlyI GAGTC 3 cut(s) 280, 703, 807
MroNI GCCGGC 1 cut(s) 294
MroXI GAANNNNTTC 1 cut(s) 1265
MseI TTAA 2 cut(s) 672, 1311
MspI CCGG 3 cut(s) 175, 224, 295
MspR9I CCNGG 1 cut(s) 176
MunI CAATTG 1 cut(s) 1146
MwoI GCNNNNNNNGC 6 cut(s) 110, 908, 917, 923, 1003, 1112
NaeI GCCGGC 1 cut(s) 296
NciI CCSGG 1 cut(s) 176
NcoI CCATGG 1 cut(s) 1126
NdeII GATC 5 cut(s) 90, 179, 247, 307, 508
NgoMIV GCCGGC 1 cut(s) 294
NlaIII CATG 4 cut(s) 248, 660, 1096, 1130
NlaIV GGNNCC 1 cut(s) 1226
NmuCI GTSAC 3 cut(s) 301, 706, 799
PciSI GCTCTTC 1 cut(s) 1113
PdiI GCCGGC 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 1265
PfeI GAWTC 3 cut(s) 1030, 1151, 1250
Pfl23II CGTACG 1 cut(s) 154
PflFI GACNNNGTC 1 cut(s) 270
PkrI GCNGC 7 cut(s) 75, 78, 115, 592, 904, 919, 1005
PleI GAGTC 3 cut(s) 279, 703, 806
PpsI GAGTC 3 cut(s) 279, 703, 806
PspFI CCCAGC 1 cut(s) 355
PspLI CGTACG 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 1226
PspPI GGNCC 4 cut(s) 880, 956, 1011, 1073
PstI CTGCAG 1 cut(s) 907
PstNI CAGNNNCTG 1 cut(s) 1003
PsuI RGATCY 2 cut(s) 179, 307
PsyI GACNNNGTC 1 cut(s) 270
RsaI GTAC 2 cut(s) 156, 420
RsaNI GTAC 2 cut(s) 155, 419
SalI GTCGAC 1 cut(s) 1121
SapI GCTCTTC 1 cut(s) 1113
SaqAI TTAA 2 cut(s) 672, 1311
SatI GCNGC 7 cut(s) 74, 77, 114, 591, 903, 918, 1004
Sau3AI GATC 5 cut(s) 90, 179, 247, 307, 508
Sau96I GGNCC 4 cut(s) 880, 956, 1011, 1073
SchI GAGTC 3 cut(s) 280, 703, 807
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 1189
SfaNI GCATC 4 cut(s) 469, 508, 577, 739
SfcI CTRYAG 1 cut(s) 903
SmlI CTYRAG 3 cut(s) 767, 912, 1238
SmoI CTYRAG 3 cut(s) 767, 912, 1238
Sse9I AATT 6 cut(s) 404, 639, 669, 947, 1146, 1313
SsiI CCGC 7 cut(s) 36, 74, 94, 111, 114, 317, 330
SspMI CTAG 3 cut(s) 782, 960, 1280
StyD4I CCNGG 1 cut(s) 174
StyI CCWWGG 2 cut(s) 574, 1126
TaaI ACNGT 5 cut(s) 423, 583, 1084, 1135, 1184
TaiI ACGT 2 cut(s) 537, 1221
TaqI TCGA 6 cut(s) 337, 892, 1122, 1206, 1233, 1269
TasI AATT 6 cut(s) 404, 639, 669, 947, 1146, 1313
TatI WGTACW 1 cut(s) 418
TauI GCSGC 2 cut(s) 76, 116
TfiI GAWTC 3 cut(s) 1030, 1151, 1250
Tru1I TTAA 2 cut(s) 672, 1311
Tru9I TTAA 2 cut(s) 672, 1311
TscAI CASTG 3 cut(s) 655, 1189, 1194
TseFI GTSAC 3 cut(s) 301, 706, 799
TseI GCWGC 5 cut(s) 76, 590, 902, 917, 1003
Tsp45I GTSAC 3 cut(s) 301, 706, 799
TspDTI ATGAA 1 cut(s) 593
TspGWI ACGGA 3 cut(s) 142, 264, 320
TspRI CASTG 3 cut(s) 655, 1189, 1194
Tth111I GACNNNGTC 1 cut(s) 270
VneI GTGCAC 1 cut(s) 1185
XagI CCTNNNNNAGG 1 cut(s) 1068
XapI RAATTY 2 cut(s) 639, 947
XmiI GTMKAC 2 cut(s) 630, 1122
XmnI GAANNNNTTC 1 cut(s) 1265
XspI CTAG 3 cut(s) 782, 960, 1280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.