AT5G14340
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014446
Physical Location & Seq
Forward (+)
4623198 .. 4624960
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14340.2

Sequence Viewer

Length: 828 bp
ATGTGTGATTTATTAGCTTGCCTTAGAAAAATTTCAATGGGGAGAAAACCGTGCTGTGACAAAATTGGATTGAAGAGAGGTCCATGGACTATAGAAGAAGATCATAGACTCATGAACTTCATTCTTAACAATGGCATCCACTGCTGGAGAATTGTCCCCAAACTCGCAGGTTTGTTGAGATGCGGGAAGAGCTGTAGATTGAGATGGATCAATTATTTGAGACCCGATCTCAAGAGAGGTGGTTTCACTGATGCTGAAGAAGATCGGATTATGGAACTTCACTCTCAACTTGGCAACCGGTGGTCTAAAATTGCCTCGCATTTCTCTGGTCGAACGGATAACGAGATCAAAAACCACTGGAATACGAAGATCAAGAAGAAGATGAAACATCTTGGGTTGGATCCGGCTACGCACAAACCGATGAATGATATTACTCATCAAACCGATCCTAATCAAGATAAAAAACCAAATATGTGTTCTACCATCAATGAAGGAGAAGAGATCAAGGATCAAACTCCAAAAGATGATGTTATCACAGAAACAACAAAAACATTAATGTTATCTGATAATGATGAGGAACTTGTGGCGAAAAACTGCAAAATTCTATGTGCAGAAGAAGTAGACTTGGAATCTCTATTTGAAACGCAATGCAATGAGATATCCTCTTCGTCTTTCTCTTCACTATGTAGTAATATTTCAAGAAGTGAATCTTCATCATATCTTGCAGAAGATTCGATCTCTTTAGAGCAATGGGACTTGGATATGACGGATCCTTTTGTACCATGGGACCTCTTCGCCAATCTTGATGATAATCTTTTCCTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF971 Myb_DNA-binding

Protein Analysis

275

Amino Acids

31.58

Weight (kDa)

5.55

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 7 - 32 2.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14340 AT5G14340
fragaria_vesca FvH4_6g52440
malus_domestica MD09G1018000.v1.1 MD17G1018700.v1.1
prunus_persica Prupe.3G299000_v2.0.a1 Prupe.3G299000_v2.0.a1 Prupe.3G299000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0174081
rosa_laevigata RLG00000022245
rosa_multiflora Rmu_sc0012378.1_g000001
rosa_roxburghii Rroxscaffold_2G00078470
rosa_rugosa Rorug02G0574600
rosa_samantha Rh2AG653900 Rh2CG629500 Rh2DG679900
rosa_wichuraiana Rw2G053690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 158
AccI GTMKAC 1 cut(s) 621
AciI CCGC 1 cut(s) 183
AclWI GGATC 7 cut(s) 215, 395, 408, 440, 516, 764, 777
AcsI RAATTY 2 cut(s) 30, 600
AcuI CTGAAG 1 cut(s) 276
AfaI GTAC 1 cut(s) 780
AgeI ACCGGT 1 cut(s) 297
AgsI TTSAA 4 cut(s) 36, 73, 641, 699
AjuI GAANNNNNNNTTGG 2 cut(s) 460, 492
AluBI AGCT 2 cut(s) 17, 192
AluI AGCT 2 cut(s) 17, 192
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 7 cut(s) 215, 395, 408, 440, 516, 764, 777
ApoI RAATTY 2 cut(s) 30, 600
AseI ATTAAT 1 cut(s) 554
AsiGI ACCGGT 1 cut(s) 297
Asp700I GAANNNNTTC 1 cut(s) 31
AspS9I GGNCC 2 cut(s) 80, 787
AvaII GGWCC 2 cut(s) 80, 787
BamHI GGATCC 2 cut(s) 400, 769
BccI CCATC 2 cut(s) 198, 491
BcgI CGANNNNNNTGC 2 cut(s) 714, 748
BcoDI GTCTC 1 cut(s) 214
BfmI CTRYAG 2 cut(s) 90, 193
BfuAI ACCTGC 1 cut(s) 158
Bme18I GGWCC 2 cut(s) 80, 787
BmgT120I GGNCC 2 cut(s) 80, 787
BmiI GGNNCC 3 cut(s) 402, 771, 788
BmsI GCATC 3 cut(s) 144, 170, 241
BplI GAGNNNNNCTC 2 cut(s) 647, 679
BpmI CTGGAG 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 215
BsaBI GATNNNNATC 2 cut(s) 450, 810
BsaI GGTCTC 1 cut(s) 214
BsaJI CCNNGG 2 cut(s) 83, 782
BsaWI WCCGGW 1 cut(s) 297
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 362
Bse3DI GCAATG 3 cut(s) 653, 658, 755
Bse8I GATNNNNATC 2 cut(s) 450, 810
BseDI CCNNGG 2 cut(s) 83, 782
BseGI GGATG 1 cut(s) 135
BseJI GATNNNNATC 2 cut(s) 450, 810
BseMI GCAATG 3 cut(s) 653, 658, 755
BseNI ACTGG 1 cut(s) 362
BsgI GTGCAG 1 cut(s) 630
BshTI ACCGGT 1 cut(s) 297
BsiSI CCGG 2 cut(s) 298, 404
BslFI GGGAC 3 cut(s) 140, 767, 800
BsmAI GTCTC 1 cut(s) 214
BsmFI GGGAC 3 cut(s) 140, 767, 800
Bso31I GGTCTC 1 cut(s) 214
Bsp19I CCATGG 2 cut(s) 83, 782
BspACI CCGC 1 cut(s) 183
BspHI TCATGA 1 cut(s) 111
BspLI GGNNCC 3 cut(s) 402, 771, 788
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 7 cut(s) 215, 395, 408, 440, 516, 764, 777
BspQI GCTCTTC 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 214
BsrDI GCAATG 3 cut(s) 653, 658, 755
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 1 cut(s) 362
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 2 cut(s) 83, 782
BssT1I CCWWGG 2 cut(s) 83, 782
Bst4CI ACNGT 1 cut(s) 51
Bst6I CTCTTC 6 cut(s) 68, 182, 492, 670, 682, 797
BstAPI GCANNNNNTGC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 23
BstDSI CCRYGG 2 cut(s) 83, 782
BstF5I GGATG 1 cut(s) 135
BstMAI GTCTC 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 141, 189
BstSFI CTRYAG 2 cut(s) 90, 193
BstX2I RGATCY 2 cut(s) 400, 769
BstYI RGATCY 2 cut(s) 400, 769
BtgI CCRYGG 2 cut(s) 83, 782
BtsCI GGATG 1 cut(s) 135
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 3 cut(s) 139, 246, 355
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 19
CciI TCATGA 1 cut(s) 111
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 2 cut(s) 80, 787
Csp6I GTAC 1 cut(s) 779
CspAI ACCGGT 1 cut(s) 297
CspCI CAANNNNNGTGG 2 cut(s) 220, 255
CviAII CATG 3 cut(s) 84, 112, 783
CviJI RGCY 3 cut(s) 17, 192, 407
CviKI_1 RGCY 3 cut(s) 17, 192, 407
CviQI GTAC 1 cut(s) 779
DdeI CTNAG 1 cut(s) 23
Eam1104I CTCTTC 6 cut(s) 68, 182, 492, 670, 682, 797
EarI CTCTTC 6 cut(s) 68, 182, 492, 670, 682, 797
Eco130I CCWWGG 2 cut(s) 83, 782
Eco31I GGTCTC 1 cut(s) 214
Eco32I GATATC 1 cut(s) 660
Eco47I GGWCC 2 cut(s) 80, 787
Eco57I CTGAAG 1 cut(s) 276
EcoO109I RGGNCCY 1 cut(s) 787
EcoRV GATATC 1 cut(s) 660
EcoT14I CCWWGG 2 cut(s) 83, 782
ErhI CCWWGG 2 cut(s) 83, 782
FaeI CATG 3 cut(s) 87, 115, 786
FalI AAGNNNNNCTT 2 cut(s) 694, 726
FaqI GGGAC 3 cut(s) 140, 767, 800
FatI CATG 3 cut(s) 83, 111, 782
FauI CCCGC 1 cut(s) 176
FblI GTMKAC 1 cut(s) 621
FokI GGATG 1 cut(s) 122
GsuI CTGGAG 1 cut(s) 166
HapII CCGG 2 cut(s) 298, 404
Hin1II CATG 3 cut(s) 87, 115, 786
HinfI GANTC 4 cut(s) 108, 629, 707, 731
HpaII CCGG 2 cut(s) 298, 404
Hpy166II GTNNAC 1 cut(s) 622
Hpy188I TCNGA 2 cut(s) 267, 565
Hpy188III TCNNGA 6 cut(s) 112, 232, 373, 455, 699, 803
Hpy8I GTNNAC 1 cut(s) 622
HpyAV CCTTC 1 cut(s) 485
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4V TGCA 4 cut(s) 597, 611, 651, 725
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 189
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 3 cut(s) 87, 115, 786
LguI GCTCTTC 1 cut(s) 182
LpnPI CCDG 6 cut(s) 130, 153, 311, 312, 343, 417
LweI GCATC 3 cut(s) 144, 170, 241
MaeIII GTNAC 1 cut(s) 56
MflI RGATCY 2 cut(s) 400, 769
MluCI AATT 6 cut(s) 30, 63, 150, 211, 309, 600
MlyI GAGTC 1 cut(s) 102
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 6 cut(s) 71, 230, 325, 568, 673, 800
MroXI GAANNNNTTC 1 cut(s) 31
MseI TTAA 2 cut(s) 126, 554
MspI CCGG 2 cut(s) 298, 404
MwoI GCNNNNNNNGC 2 cut(s) 141, 189
NcoI CCATGG 2 cut(s) 83, 782
NlaIII CATG 3 cut(s) 87, 115, 786
NlaIV GGNNCC 3 cut(s) 402, 771, 788
NmuCI GTSAC 1 cut(s) 56
PagI TCATGA 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 1 cut(s) 416
PdmI GAANNNNTTC 1 cut(s) 31
PfeI GAWTC 3 cut(s) 629, 707, 731
PinAI ACCGGT 1 cut(s) 297
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PpuMI RGGWCCY 1 cut(s) 787
PshBI ATTAAT 1 cut(s) 554
Psp5II RGGWCCY 1 cut(s) 787
PspN4I GGNNCC 3 cut(s) 402, 771, 788
PspPI GGNCC 2 cut(s) 80, 787
PspPPI RGGWCCY 1 cut(s) 787
PsuI RGATCY 2 cut(s) 400, 769
RsaI GTAC 1 cut(s) 780
RsaNI GTAC 1 cut(s) 779
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 2 cut(s) 126, 554
Sau96I GGNCC 2 cut(s) 80, 787
SchI GAGTC 1 cut(s) 102
SetI ASST 6 cut(s) 19, 82, 172, 194, 241, 792
SfaNI GCATC 3 cut(s) 144, 170, 241
SfcI CTRYAG 2 cut(s) 90, 193
SinI GGWCC 2 cut(s) 80, 787
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 6 cut(s) 30, 63, 150, 211, 309, 600
SsiI CCGC 1 cut(s) 183
SspI AATATT 1 cut(s) 694
StyI CCWWGG 2 cut(s) 83, 782
TaaI ACNGT 1 cut(s) 51
TaqI TCGA 2 cut(s) 331, 734
TasI AATT 6 cut(s) 30, 63, 150, 211, 309, 600
TfiI GAWTC 3 cut(s) 629, 707, 731
Tru1I TTAA 2 cut(s) 126, 554
Tru9I TTAA 2 cut(s) 126, 554
TscAI CASTG 3 cut(s) 146, 253, 362
TseFI GTSAC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 6 cut(s) 109, 128, 398, 437, 504, 702
TspGWI ACGGA 2 cut(s) 350, 782
TspRI CASTG 3 cut(s) 146, 253, 362
VpaK11BI GGWCC 2 cut(s) 80, 787
VspI ATTAAT 1 cut(s) 554
XapI RAATTY 2 cut(s) 30, 600
XmiI GTMKAC 1 cut(s) 621
XmnI GAANNNNTTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.