MD17G1018700.v1.1
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014446
Physical Location & Seq
Forward (+)
1462509 .. 1463630
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1018700.v1.1.491

Sequence Viewer

Length: 858 bp
ATGGGAAGACAACCTTGTTGTGACAAGGTCGGACTGAAACGAGGACCATGGACTATCGAGGAAGATCACAAGCTCATGAATTTTATTCTCAACAATGGCATCCATTGCTGGAGAATGGTACCTAAACTTGCAGGGTTGCTGAGATGTGGTAAAAGCTGCAGGTTAAGATGGATCAATTATCTAAGACCAGACCTTAAGCGAGGTGCTTTTACTGAAACTGAAGAGAATGAAATGATTCAACTCCATTCATGTCTTGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCTGGTCGGACTGATAACGAAATCAAGAACCACTGGAATACCAGAATCAAGAAGAGGTTAAAGCACCTTGGCGTAGACGCTTTGACCCACAAACCAATTGAGGAAAAAGAAAGCACTGAAGAAAATAAAGAGACAATTACTCTACACTCAAACATTACTTCTTCATCGTCGGAAGAAGGACTACACGAGTCACCAAGCAATGGCTTGGAGGCTAAGATACTGCAGGATAGTTATGGAAATGAAGGGTTTCCAGAATCAGATGAGAAATTGCAGAATGAGGTTCAGTTAGCCCCGTTGGATGACACGAACGATATCTTGAAAAATTATGAAGTTTTTTGTGGAAGCTTGGATTTGGGAACATTGAAGTTGAACCAAGGAATTACCAACACCAGCAGCATGTCTAATTCGTATAGTACTTCTTCGTTTTCGATCGAAGATTCTAACAACGCTTCGATTTCAATAGCGGAATCCATGCAGGAAAATTGTCGGCAACATTGGGTTGACACAGTCGATTCCATGCTGCCATGGGATGGTTTCAATAATCTCGAGCAAGACCTTTTTTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

286

Amino Acids

32.51

Weight (kDa)

5.42

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 5.3e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 5.9e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 110 7.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 117 2.3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14340 AT5G14340
fragaria_vesca FvH4_6g52440
malus_domestica MD09G1018000.v1.1 MD17G1018700.v1.1
prunus_persica Prupe.3G299000_v2.0.a1 Prupe.3G299000_v2.0.a1 Prupe.3G299000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0174081
rosa_laevigata RLG00000022245
rosa_multiflora Rmu_sc0012378.1_g000001
rosa_roxburghii Rroxscaffold_2G00078470
rosa_rugosa Rorug02G0574600
rosa_samantha Rh2AG653900 Rh2CG629500 Rh2DG679900
rosa_wichuraiana Rw2G053690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 150
Acc65I GGTACC 1 cut(s) 118
AccB1I GGYRCC 1 cut(s) 118
AccB7I CCANNNNNTGG 2 cut(s) 488, 818
AccI GTMKAC 1 cut(s) 363
AciI CCGC 1 cut(s) 752
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 2 cut(s) 240, 426
AfaI GTAC 2 cut(s) 120, 703
AfiI CCNNNNNNNGG 2 cut(s) 488, 818
AflII CTTAAG 1 cut(s) 194
AgsI TTSAA 6 cut(s) 239, 607, 652, 658, 747, 826
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 3 cut(s) 73, 156, 633
AluI AGCT 3 cut(s) 73, 156, 633
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 833
ApeKI GCWGC 3 cut(s) 156, 681, 808
ApoI RAATTY 1 cut(s) 79
Asp700I GAANNNNTTC 2 cut(s) 234, 534
Asp718I GGTACC 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 471
AvaI CYCGRG 1 cut(s) 833
AvaII GGWCC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 118
BarI GAAGNNNNNNTAC 2 cut(s) 453, 485
BauI CACGAG 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 13
BbvI GCAGC 3 cut(s) 143, 693, 795
BccI CCATC 2 cut(s) 162, 812
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 413
BfmI CTRYAG 2 cut(s) 157, 509
BfrI CTTAAG 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 150
BisI GCNGC 3 cut(s) 157, 682, 809
BlsI GCNGC 3 cut(s) 158, 683, 810
BmcAI AGTACT 1 cut(s) 703
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 44
BmeT110I CYCGRG 1 cut(s) 833
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 13
BpmI CTGGAG 1 cut(s) 130
BsaJI CCNNGG 4 cut(s) 47, 355, 661, 812
Bsc4I CCNNNNNNNGG 2 cut(s) 488, 818
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 2 cut(s) 103, 493
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 4 cut(s) 47, 355, 661, 812
BseGI GGATG 3 cut(s) 99, 592, 823
BseLI CCNNNNNNNGG 2 cut(s) 488, 818
BseMI GCAATG 2 cut(s) 103, 493
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 326
BseXI GCAGC 3 cut(s) 143, 693, 795
Bsh1285I CGRYCG 1 cut(s) 720
BshNI GGYRCC 1 cut(s) 118
BsiEI CGRYCG 1 cut(s) 720
BsiHKCI CYCGRG 1 cut(s) 833
BslI CCNNNNNNNGG 2 cut(s) 488, 818
BsmAI GTCTC 1 cut(s) 413
BsoBI CYCGRG 1 cut(s) 833
Bsp143I GATC 3 cut(s) 64, 171, 717
Bsp19I CCATGG 2 cut(s) 47, 812
BspACI CCGC 1 cut(s) 752
BspCNI CTCAG 1 cut(s) 132
BspHI TCATGA 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 120
BspMAI CTGCAG 2 cut(s) 161, 513
BspMI ACCTGC 1 cut(s) 150
BspPI GGATC 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 118
BspTI CTTAAG 1 cut(s) 194
BsrDI GCAATG 2 cut(s) 103, 493
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 4 cut(s) 47, 355, 661, 812
BssMI GATC 3 cut(s) 64, 171, 717
BssSI CACGAG 1 cut(s) 473
BssT1I CCWWGG 4 cut(s) 47, 355, 661, 812
Bst2BI CACGAG 1 cut(s) 473
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 796
Bst6I CTCTTC 2 cut(s) 216, 335
BstAFI CTTAAG 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 105
BstDEI CTNAG 4 cut(s) 140, 182, 270, 501
BstDSI CCRYGG 2 cut(s) 47, 812
BstF5I GGATG 3 cut(s) 99, 592, 823
BstKTI GATC 3 cut(s) 67, 174, 720
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 3 cut(s) 64, 171, 717
BstMCI CGRYCG 1 cut(s) 720
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 688
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 2 cut(s) 157, 509
BstV1I GCAGC 3 cut(s) 143, 693, 795
BstV2I GAAGAC 1 cut(s) 13
BtgI CCRYGG 2 cut(s) 47, 812
BtsCI GGATG 3 cut(s) 99, 592, 823
BtsIMutI CAGTG 2 cut(s) 319, 402
BveI ACCTGC 1 cut(s) 150
CciI TCATGA 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 44
CseI GACGC 1 cut(s) 374
Csp6I GTAC 2 cut(s) 119, 702
CviAII CATG 7 cut(s) 48, 76, 249, 685, 760, 805, 813
CviJI RGCY 6 cut(s) 73, 156, 492, 500, 578, 633
CviKI_1 RGCY 6 cut(s) 73, 156, 492, 500, 578, 633
CviQI GTAC 2 cut(s) 119, 702
DdeI CTNAG 4 cut(s) 140, 182, 270, 501
DpnI GATC 3 cut(s) 66, 173, 719
DpnII GATC 3 cut(s) 64, 171, 717
Eam1104I CTCTTC 2 cut(s) 216, 335
EarI CTCTTC 2 cut(s) 216, 335
Eco130I CCWWGG 4 cut(s) 47, 355, 661, 812
Eco32I GATATC 1 cut(s) 601
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 2 cut(s) 240, 426
Eco88I CYCGRG 1 cut(s) 833
EcoRII CCWGG 1 cut(s) 289
EcoRV GATATC 1 cut(s) 601
EcoT14I CCWWGG 4 cut(s) 47, 355, 661, 812
ErhI CCWWGG 4 cut(s) 47, 355, 661, 812
FaeI CATG 7 cut(s) 51, 79, 252, 688, 763, 808, 816
FalI AAGNNNNNCTT 1 cut(s) 30
FatI CATG 7 cut(s) 47, 75, 248, 684, 759, 804, 812
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 157, 682, 809
FokI GGATG 3 cut(s) 86, 599, 830
Fsp4HI GCNGC 3 cut(s) 157, 682, 809
GluI GCNGC 3 cut(s) 157, 682, 809
GsuI CTGGAG 1 cut(s) 130
HgaI GACGC 1 cut(s) 374
Hin1II CATG 7 cut(s) 51, 79, 252, 688, 763, 808, 816
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HindIII AAGCTT 1 cut(s) 631
HinfI GANTC 7 cut(s) 235, 333, 476, 542, 725, 755, 800
HphI GGTGA 1 cut(s) 471
Hpy166II GTNNAC 2 cut(s) 364, 790
Hpy188I TCNGA 4 cut(s) 32, 297, 460, 547
Hpy188III TCNNGA 6 cut(s) 76, 313, 337, 539, 604, 833
Hpy8I GTNNAC 2 cut(s) 364, 790
Hpy99I CGWCG 1 cut(s) 460
HpyAV CCTTC 2 cut(s) 458, 524
HpyCH4III ACNGT 1 cut(s) 796
HpyCH4V TGCA 5 cut(s) 131, 159, 511, 559, 763
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 4 cut(s) 140, 182, 270, 501
Hsp92II CATG 7 cut(s) 51, 79, 252, 688, 763, 808, 816
KpnI GGTACC 1 cut(s) 122
Kzo9I GATC 3 cut(s) 64, 171, 717
Lsp1109I GCAGC 3 cut(s) 143, 693, 795
LweI GCATC 1 cut(s) 108
MaeIII GTNAC 3 cut(s) 20, 257, 477
MalI GATC 3 cut(s) 66, 173, 719
MboI GATC 3 cut(s) 64, 171, 717
MboII GAAGA 9 cut(s) 18, 74, 233, 352, 419, 441, 473, 699, 734
MfeI CAATTG 1 cut(s) 384
MluCI AATT 9 cut(s) 79, 175, 384, 423, 554, 610, 666, 691, 769
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 4 cut(s) 10, 275, 438, 564
MnlI CCTC 7 cut(s) 35, 52, 194, 336, 382, 490, 559
MroXI GAANNNNTTC 2 cut(s) 234, 534
MseI TTAA 3 cut(s) 164, 195, 347
MspCI CTTAAG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 105
NcoI CCATGG 2 cut(s) 47, 812
NdeII GATC 3 cut(s) 64, 171, 717
NlaIII CATG 7 cut(s) 51, 79, 252, 688, 763, 808, 816
NlaIV GGNNCC 1 cut(s) 120
NmuCI GTSAC 2 cut(s) 20, 477
NspI RCATGY 1 cut(s) 688
PaeR7I CTCGAG 1 cut(s) 833
PagI TCATGA 1 cut(s) 75
PdmI GAANNNNTTC 2 cut(s) 234, 534
PfeI GAWTC 6 cut(s) 235, 333, 542, 725, 755, 800
PflFI GACNNNGTC 2 cut(s) 26, 794
PflMI CCANNNNNTGG 2 cut(s) 488, 818
PkrI GCNGC 3 cut(s) 158, 683, 810
Ple19I CGATCG 1 cut(s) 720
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 2 cut(s) 161, 513
PsyI GACNNNGTC 2 cut(s) 26, 794
PvuI CGATCG 1 cut(s) 720
RsaI GTAC 2 cut(s) 120, 703
RsaNI GTAC 2 cut(s) 119, 702
SaqAI TTAA 3 cut(s) 164, 195, 347
SatI GCNGC 3 cut(s) 157, 682, 809
Sau3AI GATC 3 cut(s) 64, 171, 717
Sau96I GGNCC 1 cut(s) 44
ScaI AGTACT 1 cut(s) 703
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 1 cut(s) 291
SfaNI GCATC 1 cut(s) 108
SfcI CTRYAG 2 cut(s) 157, 509
Sfr274I CTCGAG 1 cut(s) 833
SinI GGWCC 1 cut(s) 44
SlaI CTCGAG 1 cut(s) 833
SmlI CTYRAG 2 cut(s) 194, 833
SmoI CTYRAG 2 cut(s) 194, 833
Sse9I AATT 9 cut(s) 79, 175, 384, 423, 554, 610, 666, 691, 769
SsiI CCGC 1 cut(s) 752
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 4 cut(s) 47, 355, 661, 812
TaaI ACNGT 1 cut(s) 796
TaqI TCGA 6 cut(s) 57, 716, 720, 740, 798, 834
TasI AATT 9 cut(s) 79, 175, 384, 423, 554, 610, 666, 691, 769
TatI WGTACW 1 cut(s) 701
TfiI GAWTC 6 cut(s) 235, 333, 542, 725, 755, 800
Tru1I TTAA 3 cut(s) 164, 195, 347
Tru9I TTAA 3 cut(s) 164, 195, 347
TscAI CASTG 2 cut(s) 326, 409
TseFI GTSAC 2 cut(s) 20, 477
TseI GCWGC 3 cut(s) 156, 681, 808
Tsp45I GTSAC 2 cut(s) 20, 477
TspDTI ATGAA 6 cut(s) 92, 237, 243, 441, 543, 630
TspRI CASTG 2 cut(s) 326, 409
Tth111I GACNNNGTC 2 cut(s) 26, 794
Van91I CCANNNNNTGG 2 cut(s) 488, 818
Vha464I CTTAAG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 688
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XhoI CTCGAG 1 cut(s) 833
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 2 cut(s) 234, 534
ZrmI AGTACT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.