FvH4_6g52440
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014446
Physical Location & Seq
Reverse (-)
38620515 .. 38622343
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52440.t1

Sequence Viewer

Length: 846 bp
ATGGGAAGGCAGCCTTGTTGTGACAAAGTTGGGTTGAAAAGAGGTCCATGGACAATTGAGGAGGATCACAAACTCATGAATTTTATCCTCAACAATGGGATTCATTGCTGGAGAATGGTTCCTAAGCTTGCAGGATTGCTTAGATGTGGGAAAAGCTGCAGACTTAGATGGATCAATTATCTAAGGCCAGACCTCAAGAGAGGTGCTTTTACAGAAGCAGAAGAGAATCAGATCATTCAACTCCATTCATGTCTTGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCGGGTAGGACGGATAATGAGATCAAGAACCACTGGAATACACGAATCAAGAAGAGATTAAAGCTTCTTGGAGTAGACTCTGTGAACAACAAAGCCATTGAGCCAAAAGAAAGCATGGAAGAAAATAAAGAGATAGTTACTGATATTTCAACAGAACTAGGACAAGACAATGGCTCGGAGCCGAAATTGCTGCAGGATGAGGATAATGGGAATAAGGGATTTGAAGAACTTCCCAATGAGGTTGACTTAAGTGCCTTTGATGAGACTACTGATGTTTTGAAAAATTATGATATGTTTTGTGGAAGCTTGGATTTGGAAGAATTCATGTTGAACCAAGGAGTTAGCAACAGCAGCACCACTAGTTCCAACAACACTAGTGCTGCTACAACTACTACTAATTCTTCATTTTCTGTGGAAGAGTCTAATTACAACCCTTCTATAATAGGCGATCAATTGCTACTGCAACAGAACTGTCTACAACAATGGGTTGAGAGTGTGGATTCCATGCTTTCATGGGATGGCTTCAACAATTTGGAACAAGATCTATTCTACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

282

Amino Acids

32.01

Weight (kDa)

4.91

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 5.2e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 3.1e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 110 3.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 115 1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14340 AT5G14340
fragaria_vesca FvH4_6g52440
malus_domestica MD09G1018000.v1.1 MD17G1018700.v1.1
prunus_persica Prupe.3G299000_v2.0.a1 Prupe.3G299000_v2.0.a1 Prupe.3G299000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0174081
rosa_laevigata RLG00000022245
rosa_multiflora Rmu_sc0012378.1_g000001
rosa_roxburghii Rroxscaffold_2G00078470
rosa_rugosa Rorug02G0574600
rosa_samantha Rh2AG653900 Rh2CG629500 Rh2DG679900
rosa_wichuraiana Rw2G053690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 363, 763
AclWI GGATC 2 cut(s) 72, 179
AcsI RAATTY 2 cut(s) 79, 608
AflII CTTAAG 1 cut(s) 535
AgsI TTSAA 7 cut(s) 37, 239, 438, 512, 568, 619, 814
AhlI ACTAGT 2 cut(s) 647, 662
AluBI AGCT 4 cut(s) 127, 156, 352, 594
AluI AGCT 4 cut(s) 127, 156, 352, 594
Alw26I GTCTC 1 cut(s) 545
AlwI GGATC 2 cut(s) 72, 179
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 5 cut(s) 10, 156, 478, 639, 668
ApoI RAATTY 2 cut(s) 79, 608
Asp700I GAANNNNTTC 1 cut(s) 516
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 291
AvaII GGWCC 1 cut(s) 44
BbvI GCAGC 5 cut(s) 22, 143, 465, 651, 655
BccI CCATC 2 cut(s) 162, 800
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 545
BcuI ACTAGT 2 cut(s) 647, 662
BfaI CTAG 3 cut(s) 446, 648, 663
BfmI CTRYAG 2 cut(s) 157, 479
BfrI CTTAAG 1 cut(s) 535
BglII AGATCT 1 cut(s) 829
BisI GCNGC 5 cut(s) 11, 157, 479, 640, 669
BlsI GCNGC 5 cut(s) 12, 158, 480, 641, 670
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 120, 468
BmrFI CCNGG 1 cut(s) 291
BpmI CTGGAG 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 47, 622
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 47, 622
BseGI GGATG 2 cut(s) 490, 811
BseMI GCAATG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 5 cut(s) 22, 143, 465, 651, 655
BshFI GGCC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 545
BsnI GGCC 1 cut(s) 187
Bsp143I GATC 6 cut(s) 64, 171, 231, 309, 736, 829
Bsp19I CCATGG 1 cut(s) 47
BspANI GGCC 1 cut(s) 187
BspHI TCATGA 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 120, 468
BspMAI CTGCAG 2 cut(s) 161, 483
BspPI GGATC 2 cut(s) 72, 179
BspTI CTTAAG 1 cut(s) 535
BsrDI GCAATG 1 cut(s) 103
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 47, 622
BssMI GATC 6 cut(s) 64, 171, 231, 309, 736, 829
BssT1I CCWWGG 2 cut(s) 47, 622
Bst4CI ACNGT 1 cut(s) 761
Bst6I CTCTTC 3 cut(s) 216, 335, 699
BstAFI CTTAAG 1 cut(s) 535
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 5 cut(s) 123, 140, 164, 182, 270
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 490, 811
BstKTI GATC 6 cut(s) 67, 174, 234, 312, 739, 832
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 6 cut(s) 64, 171, 231, 309, 736, 829
BstMWI GCNNNNNNNGC 2 cut(s) 475, 639
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 2 cut(s) 157, 479
BstV1I GCAGC 5 cut(s) 22, 143, 465, 651, 655
BstX2I RGATCY 1 cut(s) 829
BstYI RGATCY 1 cut(s) 829
BsuRI GGCC 1 cut(s) 187
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 490, 811
BtsIMutI CAGTG 1 cut(s) 319
Cac8I GCNNGC 1 cut(s) 129
CciI TCATGA 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 44
CviAII CATG 7 cut(s) 48, 76, 249, 403, 613, 793, 801
DdeI CTNAG 5 cut(s) 123, 140, 164, 182, 270
DpnI GATC 6 cut(s) 66, 173, 233, 311, 738, 831
DpnII GATC 6 cut(s) 64, 171, 231, 309, 736, 829
Eam1104I CTCTTC 3 cut(s) 216, 335, 699
EarI CTCTTC 3 cut(s) 216, 335, 699
Eco130I CCWWGG 2 cut(s) 47, 622
Eco47I GGWCC 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 608
EcoT14I CCWWGG 2 cut(s) 47, 622
ErhI CCWWGG 2 cut(s) 47, 622
FaeI CATG 7 cut(s) 51, 79, 252, 406, 616, 796, 804
FalI AAGNNNNNCTT 1 cut(s) 30
FatI CATG 7 cut(s) 47, 75, 248, 402, 612, 792, 800
FblI GTMKAC 2 cut(s) 363, 763
Fnu4HI GCNGC 5 cut(s) 11, 157, 479, 640, 669
FokI GGATG 2 cut(s) 497, 818
Fsp4HI GCNGC 5 cut(s) 11, 157, 479, 640, 669
FspBI CTAG 3 cut(s) 446, 648, 663
GluI GCNGC 5 cut(s) 11, 157, 479, 640, 669
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 290
Hin1II CATG 7 cut(s) 51, 79, 252, 406, 616, 796, 804
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 3 cut(s) 125, 350, 592
HinfI GANTC 6 cut(s) 100, 226, 333, 365, 707, 788
HpaII CCGG 1 cut(s) 290
Hpy166II GTNNAC 4 cut(s) 364, 373, 532, 764
Hpy188I TCNGA 2 cut(s) 231, 466
Hpy188III TCNNGA 4 cut(s) 76, 196, 313, 337
Hpy8I GTNNAC 4 cut(s) 364, 373, 532, 764
HpyAV CCTTC 1 cut(s) 732
HpyCH4III ACNGT 1 cut(s) 761
HpyCH4V TGCA 4 cut(s) 131, 159, 481, 751
HpyF10VI GCNNNNNNNGC 2 cut(s) 475, 639
HpyF3I CTNAG 5 cut(s) 123, 140, 164, 182, 270
Hsp92II CATG 7 cut(s) 51, 79, 252, 406, 616, 796, 804
Kzo9I GATC 6 cut(s) 64, 171, 231, 309, 736, 829
LmnI GCTCC 1 cut(s) 466
LpnPI CCDG 7 cut(s) 94, 117, 201, 247, 303, 307, 467
Lsp1109I GCAGC 5 cut(s) 22, 143, 465, 651, 655
MaeI CTAG 3 cut(s) 446, 648, 663
MaeIII GTNAC 3 cut(s) 20, 257, 424
MalI GATC 6 cut(s) 66, 173, 233, 311, 738, 831
MboI GATC 6 cut(s) 64, 171, 231, 309, 736, 829
MboII GAAGA 7 cut(s) 233, 352, 419, 524, 617, 681, 716
MfeI CAATTG 2 cut(s) 54, 740
MflI RGATCY 1 cut(s) 829
MlyI GAGTC 2 cut(s) 359, 716
MmeI TCCRAC 1 cut(s) 678
MnlI CCTC 8 cut(s) 35, 52, 55, 98, 194, 203, 481, 520
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 2 cut(s) 347, 536
MspCI CTTAAG 1 cut(s) 535
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 2 cut(s) 54, 740
MwoI GCNNNNNNNGC 2 cut(s) 475, 639
NciI CCSGG 1 cut(s) 291
NcoI CCATGG 1 cut(s) 47
NdeII GATC 6 cut(s) 64, 171, 231, 309, 736, 829
NlaIII CATG 7 cut(s) 51, 79, 252, 406, 616, 796, 804
NlaIV GGNNCC 2 cut(s) 120, 468
NmuCI GTSAC 1 cut(s) 20
PagI TCATGA 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 516
PfeI GAWTC 4 cut(s) 100, 226, 333, 788
PkrI GCNGC 5 cut(s) 12, 158, 480, 641, 670
PleI GAGTC 2 cut(s) 359, 715
PpsI GAGTC 2 cut(s) 359, 715
PspN4I GGNNCC 2 cut(s) 120, 468
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 2 cut(s) 161, 483
PsuI RGATCY 1 cut(s) 829
SaqAI TTAA 2 cut(s) 347, 536
SatI GCNGC 5 cut(s) 11, 157, 479, 640, 669
Sau3AI GATC 6 cut(s) 64, 171, 231, 309, 736, 829
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 2 cut(s) 359, 716
ScrFI CCNGG 1 cut(s) 291
SetI ASST 9 cut(s) 46, 129, 158, 195, 205, 266, 354, 531, 596
SfcI CTRYAG 2 cut(s) 157, 479
SinI GGWCC 1 cut(s) 44
SmlI CTYRAG 2 cut(s) 194, 535
SmoI CTYRAG 2 cut(s) 194, 535
SpeI ACTAGT 2 cut(s) 647, 662
SspMI CTAG 3 cut(s) 446, 648, 663
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 2 cut(s) 47, 622
TaaI ACNGT 1 cut(s) 761
TfiI GAWTC 4 cut(s) 100, 226, 333, 788
Tru1I TTAA 2 cut(s) 347, 536
Tru9I TTAA 2 cut(s) 347, 536
TscAI CASTG 1 cut(s) 326
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 5 cut(s) 10, 156, 478, 639, 668
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 6 cut(s) 92, 92, 237, 601, 681, 789
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 1 cut(s) 326
Vha464I CTTAAG 1 cut(s) 535
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 2 cut(s) 79, 608
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XmiI GTMKAC 2 cut(s) 363, 763
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 3 cut(s) 446, 648, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.